clustergrammer_flow: js/clustergrammerIPG.js annotate

annotate js/clustergrammerIPG.js @ 0:fee56ee2f7ac draft

"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356"

author	azomics
date	Fri, 31 Jul 2020 19:06:45 -0400
parents
children

rev	line source
0 fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1 var Clustergrammer =
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2 /******/ (function(modules) { // webpackBootstrap
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3 /******/ // The module cache
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4 /******/ var installedModules = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6 /******/ // The require function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7 /******/ function __webpack_require__(moduleId) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9 /******/ // Check if module is in cache
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10 /******/ if(installedModules[moduleId])
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11 /******/ return installedModules[moduleId].exports;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13 /******/ // Create a new module (and put it into the cache)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14 /******/ var module = installedModules[moduleId] = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15 /******/ exports: {},
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16 /******/ id: moduleId,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17 /******/ loaded: false
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18 /******/ };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20 /******/ // Execute the module function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	21 /******/ modules[moduleId].call(module.exports, module, module.exports, __webpack_require__);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	22
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	23 /******/ // Flag the module as loaded
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	24 /******/ module.loaded = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	25
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	26 /******/ // Return the exports of the module
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	27 /******/ return module.exports;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	28 /******/ }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	29
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	30
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	31 /******/ // expose the modules object (__webpack_modules__)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	32 /******/ __webpack_require__.m = modules;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	33
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	34 /******/ // expose the module cache
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	35 /******/ __webpack_require__.c = installedModules;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	36
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	37 /******/ // __webpack_public_path__
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	38 /******/ __webpack_require__.p = "";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	39
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	40 /******/ // Load entry module and return exports
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	41 /******/ return __webpack_require__(0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	42 /******/ })
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	43 /************************************************************************/
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	44 /******/ ([
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	45 /* 0 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	46 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	47
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	48 var make_config = __webpack_require__(1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	49 var make_params = __webpack_require__(9);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	50 var make_viz = __webpack_require__(37);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	51 var resize_viz = __webpack_require__(124);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	52 var play_demo = __webpack_require__(165);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	53 var ini_demo = __webpack_require__(205);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	54 var filter_viz_using_nodes = __webpack_require__(208);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	55 var filter_viz_using_names = __webpack_require__(209);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	56 var update_cats = __webpack_require__(210);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	57 var reset_cats = __webpack_require__(211);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	58 var two_translate_zoom = __webpack_require__(116);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	59 var external_update_view = __webpack_require__(213);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	60 var save_matrix = __webpack_require__(216);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	61 var brush_crop_matrix = __webpack_require__(220);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	62 var run_zoom = __webpack_require__(125);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	63 var d3_tip_custom = __webpack_require__(48);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	64 var all_reorder = __webpack_require__(115);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	65 var make_matrix_string = __webpack_require__(218);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	66
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	67 // moved d3.slider to src
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	68 d3.slider = __webpack_require__(222);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	69
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	70 /* eslint-disable */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	71
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	72 var awesomplete = __webpack_require__(224);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	73 // getting css from src
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	74 __webpack_require__(225);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	75 __webpack_require__(229);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	76
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	77 /* clustergrammer v1.19.2
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	78 * Nicolas Fernandez, Ma'ayan Lab, Icahn School of Medicine at Mount Sinai
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	79 * (c) 2017
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	80 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	81 function Clustergrammer(args) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	82
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	83 /* Main program
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	84 * ----------------------------------------------------------------------- */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	85 // consume and validate user input
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	86 // build giant config object
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	87 // visualize based on config object
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	88 // handle user events
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	89
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	90 // consume and validate user arguments, produce configuration object
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	91 var config = make_config(args);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	92
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	93 var cgm = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	94
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	95 // make visualization parameters using configuration object
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	96 cgm.params = make_params(config);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	97 cgm.config = config;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	98
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	99 // set up zoom
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	100 cgm.params.zoom_behavior = d3.behavior.zoom().scaleExtent([1, cgm.params.viz.square_zoom * cgm.params.viz.zoom_ratio.x]).on('zoom', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	101 run_zoom(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	102 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	103
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	104 cgm.params.zoom_behavior.translate([cgm.params.viz.clust.margin.left, cgm.params.viz.clust.margin.top]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	105
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	106 if (cgm.params.use_sidebar) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	107 var make_sidebar = __webpack_require__(231);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	108 make_sidebar(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	109 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	110
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	111 // make visualization using parameters
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	112 make_viz(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	113
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	114 function external_resize() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	115
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	116 d3.select(cgm.params.viz.viz_svg).style('opacity', 0.5);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	117
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	118 var wait_time = 500;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	119 if (this.params.viz.run_trans === true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	120 wait_time = 2500;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	121 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	122
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	123 setTimeout(resize_fun, wait_time, this);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	124 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	125
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	126 function resize_fun(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	127 resize_viz(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	128 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	129
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	130 function run_update_cats(cat_data) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	131 update_cats(this, cat_data);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	132 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	133
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	134 function zoom_api(pan_dx, pan_dy, fin_zoom) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	135 two_translate_zoom(this, pan_dx, pan_dy, fin_zoom);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	136 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	137
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	138 function expose_d3_tip_custom() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	139 // this allows external modules to have access to d3_tip
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	140 return d3_tip_custom;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	141 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	142
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	143 function api_reorder(inst_rc, inst_order) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	144 if (inst_order === 'sum') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	145 inst_order = 'rank';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	146 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	147 if (inst_order === 'var') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	148 inst_order = 'rankvar';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	149 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	150 all_reorder(this, inst_order, inst_rc);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	151 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	152
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	153 function export_matrix_string() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	154 return make_matrix_string(this.params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	155 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	156
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	157 // add more API endpoints
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	158 cgm.update_view = external_update_view;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	159 cgm.resize_viz = external_resize;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	160 cgm.play_demo = play_demo;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	161 cgm.ini_demo = ini_demo;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	162 cgm.filter_viz_using_nodes = filter_viz_using_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	163 cgm.filter_viz_using_names = filter_viz_using_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	164 cgm.update_cats = run_update_cats;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	165 cgm.reset_cats = reset_cats;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	166 cgm.zoom = zoom_api;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	167 cgm.save_matrix = save_matrix;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	168 cgm.brush_crop_matrix = brush_crop_matrix;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	169 cgm.d3_tip_custom = expose_d3_tip_custom;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	170 cgm.reorder = api_reorder;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	171 cgm.export_matrix_string = export_matrix_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	172
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	173 return cgm;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	174 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	175
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	176 module.exports = Clustergrammer;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	177
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	178 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	179 /* 1 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	180 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	181
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	182 var utils = __webpack_require__(2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	183 var transpose_network = __webpack_require__(3);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	184 var get_available_filters = __webpack_require__(4);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	185 var get_filter_default_state = __webpack_require__(5);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	186 var set_defaults = __webpack_require__(6);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	187 var check_sim_mat = __webpack_require__(7);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	188 var check_nodes_for_categories = __webpack_require__(8);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	189
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	190 module.exports = function make_config(args) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	191
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	192 var defaults = set_defaults();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	193
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	194 // Mixin defaults with user-defined arguments.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	195 var config = utils.extend(defaults, args);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	196
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	197 config.network_data = args.network_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	198
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	199 var super_string = ': ';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	200
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	201 // replace undersores with space in row/col names
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	202 _.each(['row', 'col'], function (inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	203
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	204 var inst_nodes = config.network_data[inst_rc + '_nodes'];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	205
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	206 var has_cats = check_nodes_for_categories(inst_nodes);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	207
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	208 inst_nodes.forEach(function (d, i) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	209
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	210 // add index to row_nodes and col_nodes
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	211 d[inst_rc + '_index'] = i;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	212
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	213 if (has_cats) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	214 config.super_labels = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	215 config.super[inst_rc] = d.name.split(super_string)[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	216 d.name = d.name.split(super_string)[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	217 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	218
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	219 d.name = String(d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	220
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	221 d.name = d.name.replace(/_/g, ' ');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	222 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	223 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	224
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	225 config.network_data.row_nodes_names = utils.pluck(config.network_data.row_nodes, 'name');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	226 config.network_data.col_nodes_names = utils.pluck(config.network_data.col_nodes, 'name');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	227
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	228 config.sim_mat = check_sim_mat(config);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	229
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	230 var filters = get_available_filters(config.network_data.views);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	231
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	232 var default_states = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	233 _.each(_.keys(filters.possible_filters), function (inst_filter) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	234 var tmp_state = get_filter_default_state(filters.filter_data, inst_filter);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	235
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	236 default_states[inst_filter] = tmp_state;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	237 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	238
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	239 // process view
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	240 if (_.has(config.network_data, 'views')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	241 config.network_data.views.forEach(function (inst_view) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	242
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	243 _.each(_.keys(filters.possible_filters), function (inst_filter) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	244 if (!_.has(inst_view, inst_filter)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	245 inst_view[inst_filter] = default_states[inst_filter];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	246 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	247 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	248
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	249 var inst_nodes = inst_view.nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	250
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	251 // proc row/col nodes names in views
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	252 _.each(['row', 'col'], function (inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	253
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	254 var has_cats = check_nodes_for_categories(inst_nodes[inst_rc + '_nodes']);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	255
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	256 inst_nodes[inst_rc + '_nodes'].forEach(function (d, i) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	257
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	258 // add index to row_nodes and col_nodes
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	259 d[inst_rc + '_index'] = i;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	260
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	261 if (has_cats) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	262 d.name = d.name.split(super_string)[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	263 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	264
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	265 d.name = String(d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	266 d.name = d.name.replace(/_/g, ' ');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	267 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	268 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	269 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	270 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	271
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	272 var col_nodes = config.network_data.col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	273 var row_nodes = config.network_data.row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	274
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	275 // console.log( config.network_data.links[0] )
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	276 // console.log( config.network_data.links[1] )
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	277 // console.log( config.network_data.links[2] )
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	278
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	279 // console.log(_.has(config.network_data,'mat'));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	280
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	281 ///////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	282 // convert 'mat' to links
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	283 ///////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	284
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	285 if (_.has(config.network_data, 'mat')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	286
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	287 var links = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	288 var mat = config.network_data.mat;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	289 var inst_link = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	290
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	291 // console.log('found mat')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	292 for (var i = 0; i < mat.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	293 for (var j = 0; j < mat[0].length; j++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	294 // console.log(mat[i][j])
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	295
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	296 inst_link = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	297 inst_link.source = i;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	298 inst_link.target = j;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	299 inst_link.value = mat[i][j];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	300 links.push(inst_link);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	301 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	302 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	303
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	304 // save to network_data
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	305 config.network_data.links = links;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	306 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	307
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	308 // add names and instantaneous positions to links
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	309 config.network_data.links.forEach(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	310 d.name = row_nodes[d.source].name + '_' + col_nodes[d.target].name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	311 d.row_name = row_nodes[d.source].name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	312 d.col_name = col_nodes[d.target].name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	313 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	314
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	315 // transpose network if necessary
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	316 if (config.transpose) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	317 config.network_data = transpose_network(config.network_data);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	318 var tmp_col_label = args.col_label;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	319 var tmp_row_label = args.row_label;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	320 args.row_label = tmp_col_label;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	321 args.col_label = tmp_row_label;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	322 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	323
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	324 // super-row/col labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	325 if (!utils.is_undefined(args.row_label) && !utils.is_undefined(args.col_label)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	326 config.super_labels = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	327 config.super = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	328 config.super.row = args.row_label;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	329 config.super.col = args.col_label;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	330 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	331
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	332 // initialize cluster ordering - both rows and columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	333 config.inst_order = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	334 if (!utils.is_undefined(args.order) && utils.is_supported_order(args.order)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	335 config.inst_order.row = args.order;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	336 config.inst_order.col = args.order;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	337 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	338 config.inst_order.row = 'clust';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	339 config.inst_order.col = 'clust';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	340 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	341
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	342 // set row or column order directly -- note that row/col are swapped
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	343 // !! need to swap row/col orderings
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	344 if (!utils.is_undefined(args.row_order) && utils.is_supported_order(args.row_order)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	345 // !! row and col orderings are swapped, need to fix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	346 config.inst_order.col = args.row_order;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	347 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	348
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	349 if (!utils.is_undefined(args.col_order) && utils.is_supported_order(args.col_order)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	350 // !! row and col orderings are swapped, need to fix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	351 config.inst_order.row = args.col_order;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	352 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	353
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	354 var row_has_group = utils.has(config.network_data.row_nodes[0], 'group');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	355 var col_has_group = utils.has(config.network_data.col_nodes[0], 'group');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	356
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	357 config.show_dendrogram = row_has_group \|\| col_has_group;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	358
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	359 if (utils.has(config.network_data.links[0], 'value_orig')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	360 config.keep_orig = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	361 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	362 config.keep_orig = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	363 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	364
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	365 return config;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	366 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	367
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	368 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	369 /* 2 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	370 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	371
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	372
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	373 /* Utility functions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	374 * ----------------------------------------------------------------------- */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	375 module.exports = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	376 normal_name: function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	377 var inst_name = d.name.replace(/_/g, ' ').split('#')[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	378 return inst_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	379 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	380 is_supported_order: function (order) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	381 return order === 'ini' \|\| order === 'clust' \|\| order === 'rank_var' \|\| order === 'rank' \|\| order === 'class' \|\| order == 'alpha';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	382 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	383
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	384 /* Returns whether or not an object has a certain property.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	385 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	386 has: function (obj, key) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	387 return obj != null && hasOwnProperty.call(obj, key);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	388 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	389
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	390 property: function (key) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	391 return function (obj) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	392 return obj == null ? void 0 : obj[key];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	393 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	394 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	395
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	396 // Convenience version of a common use case of `map`: fetching a property.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	397 pluck: function (arr, key) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	398 var self = this;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	399 // Double check that we have lodash or underscore available
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	400 if (window._) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	401 // Underscore provides a _.pluck function. Use that.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	402 if (typeof _.pluck === 'function') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	403 return _.pluck(arr, key);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	404 } else if (typeof _.map === 'function') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	405 // Lodash does not have a pluck function.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	406 // Use _.map with the property function defined above.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	407 return _.map(arr, self.property(key));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	408 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	409 } else if (arr.map && typeof arr.map === 'function') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	410 // If lodash or underscore not available, check to see if the native arr.map is available.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	411 // If so, use it with the property function defined above.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	412 return arr.map(self.property(key));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	413 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	414 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	415
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	416 /* Returns true if the object is undefined.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	417 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	418 is_undefined: function (obj) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	419 return obj === void 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	420 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	421
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	422 /* Mixes two objects in together, overwriting a target with a source.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	423 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	424 extend: function (target, source) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	425 target = target \|\| {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	426 for (var prop in source) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	427 if (typeof source[prop] === 'object') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	428 target[prop] = this.extend(target[prop], source[prop]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	429 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	430 target[prop] = source[prop];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	431 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	432 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	433 return target;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	434 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	435 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	436
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	437 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	438 /* 3 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	439 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	440
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	441 var utils = __webpack_require__(2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	442 /* Transpose network.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	443 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	444 module.exports = function (net) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	445 var tnet = {},
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	446 inst_link,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	447 i;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	448
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	449 tnet.row_nodes = net.col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	450 tnet.col_nodes = net.row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	451 tnet.links = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	452
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	453 for (i = 0; i < net.links.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	454 inst_link = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	455 inst_link.source = net.links[i].target;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	456 inst_link.target = net.links[i].source;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	457 inst_link.value = net.links[i].value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	458
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	459 // Optional highlight.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	460 if (utils.has(net.links[i], 'highlight')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	461 inst_link.highlight = net.links[i].highlight;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	462 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	463 if (utils.has(net.links[i], 'value_up')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	464 inst_link.value_up = net.links[i].value_up;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	465 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	466 if (utils.has(net.links[i], 'value_dn')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	467 inst_link.value_dn = net.links[i].value_dn;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	468 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	469 if (utils.has(net.links[i], 'info')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	470 inst_link.info = net.links[i].info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	471 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	472 tnet.links.push(inst_link);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	473 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	474
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	475 return tnet;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	476 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	477
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	478 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	479 /* 4 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	480 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	481
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	482 module.exports = function get_available_filters(views) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	483
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	484 var possible_filters = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	485 var filter_data = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	486
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	487 _.each(views, function (inst_view) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	488 var inst_keys = _.keys(inst_view);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	489
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	490 _.each(inst_keys, function (inst_key) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	491
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	492 if (inst_key != 'nodes') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	493
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	494 if (!_.has(filter_data, inst_key)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	495 filter_data[inst_key] = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	496 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	497
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	498 filter_data[inst_key].push(inst_view[inst_key]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	499
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	500 filter_data[inst_key] = _.uniq(filter_data[inst_key]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	501 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	502 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	503 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	504
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	505 var tmp_filters = _.keys(filter_data);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	506
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	507 _.each(tmp_filters, function (inst_filter) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	508
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	509 var options = filter_data[inst_filter];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	510 var num_options = options.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	511
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	512 var filter_type = 'categorical';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	513 _.each(options, function (inst_option) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	514 if (typeof inst_option === 'number') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	515 filter_type = 'numerical';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	516 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	517 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	518
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	519 if (num_options > 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	520 possible_filters[inst_filter] = filter_type;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	521 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	522 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	523
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	524 var filters = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	525 filters.possible_filters = possible_filters;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	526 filters.filter_data = filter_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	527
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	528 return filters;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	529 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	530
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	531 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	532 /* 5 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	533 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	534
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	535 module.exports = function get_filter_default_state(filter_data, filter_type) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	536
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	537 var default_state = filter_data[filter_type].sort(function (a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	538 return b - a;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	539 })[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	540
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	541 default_state = String(default_state);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	542
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	543 return default_state;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	544 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	545
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	546 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	547 /* 6 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	548 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	549
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	550 module.exports = function set_defaults() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	551
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	552 var defaults = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	553 // Label options
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	554 row_label_scale: 1,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	555 col_label_scale: 1,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	556 super_labels: false,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	557 super: {},
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	558 show_label_tooltips: true,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	559 show_tile_tooltips: true,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	560 // matrix options
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	561 transpose: false,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	562 tile_colors: ['#FF0000', '#1C86EE'],
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	563 bar_colors: ['#FF0000', '#1C86EE'],
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	564 // value-cat colors
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	565 // cat_value_colors: ['#2F4F4F', '#8A2BE2'],
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	566 cat_value_colors: ['#2F4F4F', '#9370DB'],
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	567 outline_colors: ['orange', 'black'],
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	568 highlight_color: '#FFFF00',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	569 tile_title: false,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	570 // Default domain is set to 0: the domain will be set automatically
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	571 input_domain: 0,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	572 opacity_scale: 'linear',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	573 do_zoom: true,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	574 is_zoom: 0,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	575 is_slider_drag: false,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	576 is_cropping: false,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	577 background_color: '#FFFFFF',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	578 super_border_color: '#F5F5F5',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	579 outer_margins: {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	580 top: 0,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	581 bottom: 0,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	582 left: 0,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	583 right: 0
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	584 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	585 ini_expand: false,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	586 grey_border_width: 2,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	587 tile_click_hlight: false,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	588 super_label_scale: 1,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	589 make_tile_tooltip: function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	590 return d.info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	591 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	592 // initialize view, e.g. initialize with row filtering
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	593 ini_view: null,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	594 // record of requested views
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	595 requested_view: null,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	596 use_sidebar: true,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	597 title: null,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	598 about: null,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	599 sidebar_width: 160,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	600 sidebar_icons: true,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	601 row_search_placeholder: 'Row',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	602 buffer_width: 10,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	603 show_sim_mat: false,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	604 cat_colors: null,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	605 resize: true,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	606 clamp_opacity: 0.85,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	607 expand_button: true,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	608 max_allow_fs: 20,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	609 dendro_filter: { 'row': false, 'col': false },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	610 cat_filter: { 'row': false, 'col': false },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	611 crop_filter_nodes: { 'row': false, 'col': false },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	612 row_tip_callback: null,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	613 col_tip_callback: null,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	614 tile_tip_callback: null,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	615 matrix_update_callback: null,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	616 cat_update_callback: null,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	617 dendro_callback: null,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	618 dendro_click_callback: null,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	619 new_row_cats: null,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	620 make_modals: true,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	621 show_viz_border: false
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	622 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	623
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	624 return defaults;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	625 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	626
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	627 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	628 /* 7 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	629 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	630
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	631 module.exports = function check_sim_mat(config) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	632
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	633 var sim_mat = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	634
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	635 var num_rows = config.network_data.row_nodes_names.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	636 var num_cols = config.network_data.col_nodes_names.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	637
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	638 if (num_rows == num_cols) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	639
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	640 // the sort here was causing errors
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	641 var rows = config.network_data.row_nodes_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	642 var cols = config.network_data.col_nodes_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	643 sim_mat = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	644
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	645 _.each(rows, function (inst_row) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	646 var inst_index = rows.indexOf(inst_row);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	647 if (inst_row !== cols[inst_index]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	648 sim_mat = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	649 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	650 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	651 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	652
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	653 if (sim_mat) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	654 config.expand_button = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	655 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	656
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	657 return sim_mat;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	658 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	659
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	660 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	661 /* 8 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	662 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	663
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	664 module.exports = function check_nodes_for_categories(nodes) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	665
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	666 var super_string = ': ';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	667 var has_cat = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	668
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	669 _.each(nodes, function (inst_node) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	670 var inst_name = String(inst_node.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	671 if (inst_name.indexOf(super_string) < 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	672 has_cat = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	673 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	674 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	675
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	676 return has_cat;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	677 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	678
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	679 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	680 /* 9 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	681 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	682
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	683 var make_network_using_view = __webpack_require__(10);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	684 var ini_sidebar_params = __webpack_require__(13);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	685 var make_requested_view = __webpack_require__(14);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	686 var get_available_filters = __webpack_require__(4);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	687 var calc_viz_params = __webpack_require__(15);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	688 var ini_zoom_info = __webpack_require__(36);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	689
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	690 /*
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	691 Params: calculates the size of all the visualization elements in the
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	692 clustergram.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	693 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	694
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	695 module.exports = function make_params(input_config) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	696
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	697 var config = $.extend(true, {}, input_config);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	698 var params = config;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	699
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	700 // keep a copy of inst_view
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	701 params.inst_nodes = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	702 params.inst_nodes.row_nodes = params.network_data.row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	703 params.inst_nodes.col_nodes = params.network_data.col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	704
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	705 // when pre-loading the visualization using a view
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	706 if (params.ini_view !== null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	707
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	708 var requested_view = params.ini_view;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	709
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	710 var filters = get_available_filters(params.network_data.views);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	711
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	712 params.viz = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	713 params.viz.possible_filters = filters.possible_filters;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	714 params.viz.filter_data = filters.filter_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	715
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	716 requested_view = make_requested_view(params, requested_view);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	717 params.network_data = make_network_using_view(config, params, requested_view);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	718
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	719 // save ini_view as requested_view
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	720 params.requested_view = requested_view;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	721 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	722
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	723 params = calc_viz_params(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	724
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	725 if (params.use_sidebar) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	726 params.sidebar = ini_sidebar_params(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	727 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	728
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	729 params.zoom_info = ini_zoom_info();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	730
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	731 return params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	732 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	733
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	734 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	735 /* 10 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	736 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	737
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	738 var filter_network_using_new_nodes = __webpack_require__(11);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	739 var get_subset_views = __webpack_require__(12);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	740
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	741 module.exports = function make_network_using_view(config, params, requested_view) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	742
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	743 var orig_views = config.network_data.views;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	744
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	745 var is_enr = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	746 if (_.has(orig_views[0], 'enr_score_type')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	747 is_enr = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	748 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	749
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	750 var sub_views = get_subset_views(params, orig_views, requested_view);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	751
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	752 //////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	753 // Enrichr specific rules
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	754 //////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	755 if (is_enr && sub_views.length == 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	756 requested_view = { 'N_row_sum': 'all', 'N_col_sum': '10' };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	757 sub_views = get_subset_views(params, orig_views, requested_view);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	758 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	759
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	760 var inst_view = sub_views[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	761
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	762 var new_network_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	763
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	764 // get new_network_data or default back to old_network_data
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	765 if (typeof inst_view !== 'undefined') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	766 var new_nodes = inst_view.nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	767 new_network_data = filter_network_using_new_nodes(config, new_nodes);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	768 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	769 new_network_data = config.network_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	770 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	771
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	772 return new_network_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	773 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	774
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	775 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	776 /* 11 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	777 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	778
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	779 var utils = __webpack_require__(2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	780
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	781 module.exports = function filter_network_using_new_nodes(config, new_nodes) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	782
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	783 var links = config.network_data.links;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	784
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	785 // get new names of rows and cols
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	786 var row_names = utils.pluck(new_nodes.row_nodes, 'name');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	787 var col_names = utils.pluck(new_nodes.col_nodes, 'name');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	788
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	789 var new_links = _.filter(links, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	790 var inst_row = d.name.split('_')[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	791 var inst_col = d.name.split('_')[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	792
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	793 var row_index = _.indexOf(row_names, inst_row);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	794 var col_index = _.indexOf(col_names, inst_col);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	795
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	796 if (row_index > -1 & col_index > -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	797 // redefine source and target
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	798 d.source = row_index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	799 d.target = col_index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	800 return d;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	801 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	802 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	803
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	804 // set up new_network_data
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	805 var new_network_data = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	806 // rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	807 new_network_data.row_nodes = new_nodes.row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	808 new_network_data.row_nodes_names = row_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	809 // cols
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	810 new_network_data.col_nodes = new_nodes.col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	811 new_network_data.col_nodes_names = col_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	812 // links
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	813 new_network_data.links = new_links;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	814 // save all links
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	815 new_network_data.all_links = links;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	816 // add back all views
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	817 new_network_data.views = config.network_data.views;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	818
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	819 // add cat_colors if necessary
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	820 if (_.has(config.network_data, 'cat_colors')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	821 new_network_data.cat_colors = config.network_data.cat_colors;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	822 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	823
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	824 return new_network_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	825 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	826
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	827 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	828 /* 12 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	829 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	830
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	831 var utils = __webpack_require__(2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	832 var get_filter_default_state = __webpack_require__(5);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	833
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	834 module.exports = function get_subset_views(params, views, requested_view) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	835
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	836 var inst_value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	837 var found_filter;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	838
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	839 var request_filters = _.keys(requested_view);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	840
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	841 // find a view that matches all of the requested view/filter-attributes
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	842 _.each(request_filters, function (inst_filter) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	843
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	844 inst_value = requested_view[inst_filter];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	845
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	846 // if the value is a number, then convert it to an integer
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	847 if (/[^a-z_]/i.test(inst_value)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	848 inst_value = parseInt(inst_value, 10);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	849 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	850
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	851 // only run filtering if any of the views has the filter
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	852 found_filter = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	853 _.each(views, function (tmp_view) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	854 if (utils.has(tmp_view, inst_filter)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	855 found_filter = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	856 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	857 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	858
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	859 if (found_filter) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	860 views = _.filter(views, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	861 return d[inst_filter] == inst_value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	862 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	863 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	864 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	865
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	866 // remove duplicate complete default states
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	867 var export_views = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	868 var found_default = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	869 var check_default;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	870 var inst_default_state;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	871
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	872 // check if each view is a default state: all filters are at default
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	873 // there can only be one of these
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	874 _.each(views, function (inst_view) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	875
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	876 check_default = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	877
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	878 // check each filter in a view to see if it is in the default state
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	879 _.each(_.keys(params.viz.possible_filters), function (inst_filter) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	880
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	881 inst_default_state = get_filter_default_state(params.viz.filter_data, inst_filter);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	882
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	883 if (inst_view[inst_filter] != inst_default_state) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	884 check_default = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	885 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	886 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	887
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	888 // found defaule view, only append if you have not already found a default
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	889 if (check_default) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	890 if (found_default === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	891 found_default = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	892 export_views.push(inst_view);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	893 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	894 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	895 export_views.push(inst_view);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	896 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	897 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	898
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	899 // if (export_views.length > 1){
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	900 // console.log('found more than one view in get_subset_views')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	901 // console.log(requested_view)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	902 // console.log(export_views)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	903 // } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	904 // console.log('found single view in get_subset_views')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	905 // console.log(requested_view)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	906 // console.log(export_views[0])
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	907 // console.log('\n')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	908 // }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	909
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	910 return export_views;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	911 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	912
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	913 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	914 /* 13 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	915 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	916
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	917 module.exports = function ini_sidebar_params(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	918 var sidebar = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	919
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	920 sidebar.wrapper = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	921 // sidebar.wrapper.width = 170;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	922
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	923 sidebar.row_search = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	924 sidebar.row_search.box = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	925 sidebar.row_search.box.height = 34;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	926 sidebar.row_search.box.width = 95;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	927 sidebar.row_search.placeholder = params.row_search_placeholder;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	928 sidebar.row_search.margin_left = 7;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	929
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	930 sidebar.slider = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	931 sidebar.slider.width = params.sidebar_width - 30;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	932 sidebar.slider.margin_left = 15;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	933
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	934 sidebar.key_cat = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	935 sidebar.key_cat.width = params.sidebar_width - 15;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	936 sidebar.key_cat.margin_left = 5;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	937 sidebar.key_cat.max_height = 100;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	938
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	939 sidebar.title = params.title;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	940 sidebar.title_margin_left = 7;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	941 sidebar.about = params.about;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	942 sidebar.width = params.sidebar_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	943
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	944 sidebar.buttons = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	945 sidebar.buttons.width = params.sidebar_width - 15;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	946
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	947 sidebar.text = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	948
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	949 sidebar.icons = params.sidebar_icons;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	950 sidebar.icon_margin_left = -5;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	951
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	952 return sidebar;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	953 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	954
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	955 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	956 /* 14 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	957 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	958
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	959 module.exports = function make_view_request(params, requested_view) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	960
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	961 // this will add all necessary information to a view request
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	962 // it will grab necessary view information from the sliders
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	963
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	964 // only one component will be changed at a time
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	965 var changed_component = _.keys(requested_view)[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	966
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	967 // add additional filter information from othe possible filters
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	968 _.each(_.keys(params.viz.possible_filters), function (inst_filter) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	969
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	970 if (inst_filter != changed_component) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	971
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	972 if (!d3.select(params.root + ' .slider_' + inst_filter).empty()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	973
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	974 var inst_state = d3.select(params.root + ' .slider_' + inst_filter).attr('current_state');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	975
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	976 requested_view[inst_filter] = inst_state;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	977 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	978 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	979 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	980
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	981 return requested_view;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	982 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	983
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	984 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	985 /* 15 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	986 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	987
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	988 var ini_label_params = __webpack_require__(16);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	989 var set_viz_wrapper_size = __webpack_require__(17);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	990 var get_svg_dim = __webpack_require__(19);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	991 var calc_label_params = __webpack_require__(20);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	992 var calc_clust_width = __webpack_require__(21);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	993 var calc_clust_height = __webpack_require__(22);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	994 var calc_val_max = __webpack_require__(23);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	995 var calc_matrix_params = __webpack_require__(24);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	996 var set_zoom_params = __webpack_require__(29);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	997 var calc_default_fs = __webpack_require__(31);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	998 var utils = __webpack_require__(2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	999 var get_available_filters = __webpack_require__(4);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1000 var make_cat_params = __webpack_require__(32);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1001
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1002 module.exports = function calc_viz_params(params, predefined_cat_colors = true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1003
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1004 params.labels = ini_label_params(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1005 params.viz = ini_viz_params(params, predefined_cat_colors);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1006
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1007 set_viz_wrapper_size(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1008
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1009 params = get_svg_dim(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1010 params.viz = calc_label_params(params.viz);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1011 params.viz = calc_clust_width(params.viz);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1012 params.viz = calc_clust_height(params.viz);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1013
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1014 if (params.sim_mat) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1015 if (params.viz.clust.dim.width <= params.viz.clust.dim.height) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1016 params.viz.clust.dim.height = params.viz.clust.dim.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1017 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1018 params.viz.clust.dim.width = params.viz.clust.dim.height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1019 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1020 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1021
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1022 params = calc_val_max(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1023 params = calc_matrix_params(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1024 params = set_zoom_params(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1025 params = calc_default_fs(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1026
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1027 function ini_viz_params(params, predefined_cat_colors = true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1028
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1029 var viz = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1030
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1031 viz.root = params.root;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1032
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1033 viz.root_tips = params.root.replace('#', '.') + '_' + 'd3-tip';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1034
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1035 viz.viz_wrapper = params.root + ' .viz_wrapper';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1036 viz.do_zoom = params.do_zoom;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1037 viz.background_color = params.background_color;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1038 viz.super_border_color = params.super_border_color;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1039 viz.outer_margins = params.outer_margins;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1040 viz.is_expand = params.ini_expand;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1041 viz.grey_border_width = params.grey_border_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1042 viz.show_dendrogram = params.show_dendrogram;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1043 viz.tile_click_hlight = params.tile_click_hlight;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1044 viz.inst_order = params.inst_order;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1045 viz.expand_button = params.expand_button;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1046 viz.sim_mat = params.sim_mat;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1047 viz.dendro_filter = params.dendro_filter;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1048 viz.cat_filter = params.cat_filter;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1049 viz.cat_value_colors = params.cat_value_colors;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1050
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1051 viz.viz_svg = viz.viz_wrapper + ' .viz_svg';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1052
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1053 viz.zoom_element = viz.viz_wrapper + ' .viz_svg';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1054
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1055 viz.uni_duration = 1000;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1056 // extra space below the clustergram (was 5)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1057 // will increase this to accomidate dendro slider
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1058 viz.bottom_space = 10;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1059 viz.run_trans = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1060 viz.duration = 1000;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1061
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1062 viz.resize = params.resize;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1063 if (utils.has(params, 'size')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1064 viz.fixed_size = params.size;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1065 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1066 viz.fixed_size = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1067 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1068
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1069 // width is 1 over this value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1070 viz.border_fraction = 65;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1071 viz.uni_margin = 5;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1072
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1073 viz.super_labels = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1074 viz.super_labels.margin = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1075 viz.super_labels.dim = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1076 viz.super_labels.margin.left = viz.grey_border_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1077 viz.super_labels.margin.top = viz.grey_border_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1078 viz.super_labels.dim.width = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1079 if (params.labels.super_labels) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1080 viz.super_labels.dim.width = 15 * params.labels.super_label_scale;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1081 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1082
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1083 viz.triangle_opacity = 0.6;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1084
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1085 viz.norm_labels = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1086 viz.norm_labels.width = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1087
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1088 viz.dendro_room = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1089 if (viz.show_dendrogram) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1090 viz.dendro_room.symbol_width = 10;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1091 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1092 viz.dendro_room.symbol_width = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1093 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1094
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1095 viz.cat_colors = params.cat_colors;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1096
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1097 // console.log('ini_viz_params -> make_cat_params')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1098 // console.log('predefined_cat_colors outside function ' + String(predefined_cat_colors))
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1099
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1100 viz = make_cat_params(params, viz, predefined_cat_colors);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1101
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1102 if (_.has(params, 'group_level') == false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1103 if (viz.show_dendrogram) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1104 params.group_level = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1105 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1106 params.group_level.row = 5;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1107 params.group_level.col = 5;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1108 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1109
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1110 viz.dendro_opacity = 0.35;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1111
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1112 viz.spillover_col_slant = viz.norm_labels.width.col;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1113
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1114 var filters = get_available_filters(params.network_data.views);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1115
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1116 viz.possible_filters = filters.possible_filters;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1117 viz.filter_data = filters.filter_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1118
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1119 viz.viz_nodes = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1120
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1121 // nodes that should be visible based on visible area
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1122 viz.viz_nodes.row = params.network_data.row_nodes_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1123 viz.viz_nodes.col = params.network_data.col_nodes_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1124
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1125 // nodes that are currently visible
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1126 viz.viz_nodes.curr_row = params.network_data.row_nodes_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1127 viz.viz_nodes.curr_col = params.network_data.col_nodes_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1128
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1129 // correct panning in x direction
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1130 viz.x_offset = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1131
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1132 return viz;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1133 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1134
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1135 return params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1136 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1137
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1138 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1139 /* 16 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1140 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1141
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1142 module.exports = function ini_label_params(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1143
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1144 var labels = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1145 labels.super_label_scale = params.super_label_scale;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1146 labels.super_labels = params.super_labels;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1147 labels.super_label_fs = 20;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1148
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1149 if (labels.super_labels) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1150 labels.super = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1151 labels.super.row = params.super.row;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1152 labels.super.col = params.super.col;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1153 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1154
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1155 labels.show_label_tooltips = params.show_label_tooltips;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1156
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1157 labels.row_max_char = _.max(params.network_data.row_nodes, function (inst) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1158 return inst.name.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1159 }).name.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1160
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1161 labels.col_max_char = _.max(params.network_data.col_nodes, function (inst) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1162 return inst.name.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1163 }).name.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1164
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1165 labels.max_allow_fs = params.max_allow_fs;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1166
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1167 return labels;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1168 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1169
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1170 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1171 /* 17 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1172 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1173
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1174 var calc_viz_dimensions = __webpack_require__(18);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1175
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1176 module.exports = function set_viz_wrapper_size(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1177
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1178 // Create wrapper around SVG visualization
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1179 if (d3.select(params.root + ' .viz_wrapper').empty()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1180
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1181 d3.select(params.root).append('div').classed('sidebar_wrapper', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1182
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1183 d3.select(params.root).append('div').classed('viz_wrapper', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1184 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1185
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1186 var cont_dim = calc_viz_dimensions(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1187
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1188 d3.select(params.root + ' .sidebar_wrapper').style('float', 'left').style('width', params.sidebar_width + 'px').style('height', cont_dim.height + 'px').style('overflow', 'hidden');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1189
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1190 d3.select(params.viz.viz_wrapper).style('float', 'left').style('width', cont_dim.width + 'px').style('height', cont_dim.height + 'px');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1191 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1192
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1193 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1194 /* 18 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1195 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1196
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1197 module.exports = function calc_viz_dimensions(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1198
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1199 var cont_dim = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1200 var extra_space = params.buffer_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1201
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1202 // var screen_width = window.innerWidth;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1203 // var screen_height = window.innerHeight;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1204
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1205 // // resize container, then resize visualization within container
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1206 // d3.select(params.root)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1207 // .style('width', screen_width+'px')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1208 // .style('height', screen_height+'px');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1209
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1210 var container_width = d3.select(params.root).style('width').replace('px', '');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1211 var container_height = d3.select(params.root).style('height').replace('px', '');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1212
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1213 // get outer_margins
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1214 var outer_margins;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1215 if (params.viz.is_expand === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1216 outer_margins = params.viz.outer_margins;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1217 cont_dim.width = container_width - params.sidebar_width - extra_space;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1218 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1219 outer_margins = params.viz.outer_margins;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1220 cont_dim.width = container_width - extra_space;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1221 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1222
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1223 cont_dim.top = outer_margins.top;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1224 cont_dim.left = outer_margins.left;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1225
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1226 if (params.viz.resize) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1227
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1228 cont_dim.height = container_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1229 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1230
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1231 if (params.viz.is_expand) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1232 cont_dim.width = params.viz.fixed_size.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1233 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1234 cont_dim.width = params.viz.fixed_size.width - params.sidebar_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1235 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1236
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1237 cont_dim.height = params.viz.fixed_size.height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1238 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1239
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1240 return cont_dim;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1241 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1242
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1243 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1244 /* 19 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1245 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1246
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1247 module.exports = function get_svg_dim(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1248
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1249 params.viz.svg_dim = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1250 params.viz.svg_dim.width = Number(d3.select(params.viz.viz_wrapper).style('width').replace('px', ''));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1251
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1252 params.viz.svg_dim.height = Number(d3.select(params.viz.viz_wrapper).style('height').replace('px', ''));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1253
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1254 return params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1255 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1256
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1257 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1258 /* 20 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1259 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1260
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1261 module.exports = function calc_label_params(viz) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1262
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1263 viz.norm_labels.margin = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1264
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1265 viz.norm_labels.margin.left = viz.super_labels.margin.left + viz.super_labels.dim.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1266
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1267 viz.norm_labels.margin.top = viz.super_labels.margin.top + viz.super_labels.dim.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1268
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1269 viz.label_background = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1270
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1271 viz.label_background.row = viz.norm_labels.width.row + viz.cat_room.row + viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1272
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1273 viz.label_background.col = viz.norm_labels.width.col + viz.cat_room.col + viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1274
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1275 return viz;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1276 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1277
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1278 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1279 /* 21 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1280 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1281
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1282 module.exports = function calc_clust_width(viz) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1283
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1284 viz.clust = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1285 viz.clust.margin = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1286
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1287 // margin on left/top of the clustergram/matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1288 // 1) norm_label margin and width
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1289 // 2) cat_room and uni_margin
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1290 viz.clust.margin.left = viz.norm_labels.margin.left + viz.norm_labels.width.row + viz.cat_room.row + viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1291
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1292 viz.clust.margin.top = viz.norm_labels.margin.top + viz.norm_labels.width.col + viz.cat_room.col + viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1293
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1294 // the clustergram/matrix width is the svg width minus:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1295 // the margin of the clustergram on the left
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1296 // the room for the spillover on the right
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1297 // ** the dendro will fit in the spillover room on the right
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1298 var ini_clust_width = viz.svg_dim.width - viz.clust.margin.left - viz.spillover_col_slant;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1299
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1300 // make tmp scale to calc height of triangle col labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1301 var tmp_x_scale = d3.scale.ordinal().rangeBands([0, ini_clust_width]).domain(_.range(viz.num_col_nodes));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1302
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1303 var triangle_height = tmp_x_scale.rangeBand() / 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1304
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1305 // prevent the visualization from being unnecessarily wide
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1306 if (triangle_height > viz.norm_labels.width.col) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1307 var reduce_width = viz.norm_labels.width.col / triangle_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1308 ini_clust_width = ini_clust_width * reduce_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1309 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1310
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1311 viz.clust.dim = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1312 viz.clust.dim.width = ini_clust_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1313
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1314 return viz;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1315 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1316
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1317 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1318 /* 22 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1319 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1320
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1321 module.exports = function calc_clust_height(viz) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1322
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1323 // the clustergram/matrix height is the svg width minus:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1324 // the margin of the clustergram on the top
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1325 // the dendrogram
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1326 // the bottom_space
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1327 var ini_clust_height = viz.svg_dim.height - viz.clust.margin.top - viz.dendro_room.col - viz.bottom_space;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1328
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1329 viz.clust.dim.height = ini_clust_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1330
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1331 return viz;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1332 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1333
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1334 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1335 /* 23 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1336 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1337
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1338 module.exports = function calc_val_max(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1339
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1340 var val_max = Math.abs(_.max(params.network_data.col_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1341 return Math.abs(d.value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1342 }).value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1343
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1344 params.labels.bar_scale_col = d3.scale.linear().domain([0, val_max]).range([0, 0.75 * params.viz.norm_labels.width.col]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1345
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1346 val_max = Math.abs(_.max(params.network_data.row_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1347 return Math.abs(d.value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1348 }).value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1349
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1350 params.labels.bar_scale_row = d3.scale.linear().domain([0, val_max]).range([0, params.viz.norm_labels.width.row]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1351
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1352 return params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1353 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1354
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1355 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1356 /* 24 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1357 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1358
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1359 var ini_matrix_params = __webpack_require__(25);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1360 var calc_downsampled_levels = __webpack_require__(27);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1361
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1362 module.exports = function calc_matrix_params(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1363
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1364 params.matrix = ini_matrix_params(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1365
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1366 // X and Y scales: set domains and ranges
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1367 //////////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1368 params.viz.x_scale = d3.scale.ordinal().rangeBands([0, params.viz.clust.dim.width]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1369
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1370 params.viz.y_scale = d3.scale.ordinal().rangeBands([0, params.viz.clust.dim.height]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1371
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1372 var inst_order;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1373
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1374 _.each(['row', 'col'], function (inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1375
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1376 inst_order = params.viz.inst_order[inst_rc];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1377
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1378 if (inst_order === 'custom') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1379 inst_order = 'clust';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1380 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1381
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1382 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1383 params.viz.x_scale.domain(params.matrix.orders[inst_order + '_' + inst_rc]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1384 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1385 params.viz.y_scale.domain(params.matrix.orders[inst_order + '_' + inst_rc]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1386 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1387 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1388
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1389 // border width
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1390 params.viz.border_width = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1391 params.viz.border_width.x = params.viz.x_scale.rangeBand() / params.viz.border_fraction;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1392 params.viz.border_width.y = params.viz.y_scale.rangeBand() / params.viz.border_fraction;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1393
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1394 // rect width needs matrix and zoom parameters
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1395 params.viz.rect_width = params.viz.x_scale.rangeBand() - params.viz.border_width.x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1396
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1397 // moved calculateion to calc_matrix_params
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1398 params.viz.rect_height = params.viz.y_scale.rangeBand() - params.viz.border_width.y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1399
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1400 calc_downsampled_levels(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1401
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1402 return params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1403 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1404
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1405 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1406 /* 25 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1407 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1408
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1409 var utils = __webpack_require__(2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1410 var initialize_matrix = __webpack_require__(26);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1411
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1412 module.exports = function ini_matrix_params(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1413
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1414 var matrix = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1415
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1416 var network_data = params.network_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1417
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1418 matrix.tile_colors = params.tile_colors;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1419 matrix.bar_colors = params.bar_colors;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1420 matrix.outline_colors = params.outline_colors;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1421 matrix.hlight_color = params.highlight_color;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1422 matrix.tile_title = params.tile_title;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1423 matrix.show_tile_tooltips = params.show_tile_tooltips;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1424 matrix.make_tile_tooltip = params.make_tile_tooltip;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1425
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1426 // initialized clicked tile and rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1427 matrix.click_hlight_x = -666;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1428 matrix.click_hlight_y = -666;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1429 matrix.click_hlight_row = -666;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1430 matrix.click_hlight_col = -666;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1431
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1432 // definition of a large matrix (num links) determines if transition is run
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1433 matrix.def_large_matrix = 10000;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1434 matrix.opacity_function = params.opacity_scale;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1435
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1436 matrix.orders = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1437
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1438 _.each(['row', 'col'], function (inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1439
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1440 // row ordering is based on col info and vice versa
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1441 var other_rc;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1442 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1443 other_rc = 'col';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1444 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1445 other_rc = 'row';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1446 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1447
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1448 // the nodes are defined using other_rc
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1449 var inst_nodes = network_data[other_rc + '_nodes'];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1450 var num_nodes = inst_nodes.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1451
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1452 var nodes_names = utils.pluck(inst_nodes, 'name');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1453 var tmp = nodes_names.sort();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1454
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1455 var alpha_index = _.map(tmp, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1456 return network_data[other_rc + '_nodes_names'].indexOf(d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1457 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1458
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1459 matrix.orders['alpha_' + inst_rc] = alpha_index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1460
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1461 var possible_orders = ['clust', 'rank'];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1462
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1463 if (_.has(inst_nodes[0], 'rankvar')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1464 possible_orders.push('rankvar');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1465 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1466
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1467 if (params.viz.all_cats[other_rc].length > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1468 _.each(params.viz.all_cats[other_rc], function (inst_cat) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1469 // the index of the category has replaced - with _
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1470 inst_cat = inst_cat.replace('-', '_');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1471 possible_orders.push(inst_cat + '_index');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1472 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1473 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1474
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1475 _.each(possible_orders, function (inst_order) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1476
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1477 var tmp_order_index = d3.range(num_nodes).sort(function (a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1478 return inst_nodes[b][inst_order] - inst_nodes[a][inst_order];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1479 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1480
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1481 matrix.orders[inst_order + '_' + inst_rc] = tmp_order_index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1482 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1483 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1484
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1485 if (utils.has(network_data, 'all_links')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1486 matrix.max_link = _.max(network_data.all_links, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1487 return Math.abs(d.value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1488 }).value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1489 matrix.true_max=_.max(network_data.all_links, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1490 return d.value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1491 }).value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1492 matrix.true_min=_.min(network_data.all_links, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1493 return d.value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1494 }).value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1495 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1496 matrix.max_link = _.max(network_data.links, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1497 return Math.abs(d.value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1498 }).value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1499 matrix.true_max=_.max(network_data.links, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1500 return d.value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1501 }).value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1502 matrix.true_min=_.min(network_data.links, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1503 return d.value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1504 }).value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1505 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1506 matrix.mid_val = (matrix.true_max + matrix.true_min) / 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1507 matrix.abs_max_val = Math.abs(matrix.max_link) * params.clamp_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1508
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1509 if (params.input_domain === 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1510 if (matrix.opacity_function === 'linear') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1511 matrix.opacity_scale = d3.scale.linear().domain([matrix.mid_val, matrix.true_max]).clamp(true).range([0.0, 1.0]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1512 } else if (matrix.opacity_function === 'log') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1513 matrix.opacity_scale = d3.scale.log().domain([0.001, matrix.abs_max_val]).clamp(true).range([0.0, 1.0]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1514 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1515 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1516 if (matrix.opacity_function === 'linear') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1517 matrix.opacity_scale = d3.scale.linear().domain([0, params.input_domain]).clamp(true).range([0.0, 1.0]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1518 } else if (matrix.opacity_function === 'log') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1519 matrix.opacity_scale = d3.scale.log().domain([0.001, params.input_domain]).clamp(true).range([0.0, 1.0]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1520 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1521 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1522
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1523 var has_val_up = utils.has(network_data.links[0], 'value_up');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1524 var has_val_dn = utils.has(network_data.links[0], 'value_dn');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1525
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1526 if (has_val_up \|\| has_val_dn) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1527 matrix.tile_type = 'updn';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1528 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1529 matrix.tile_type = 'simple';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1530 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1531
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1532 if (utils.has(network_data.links[0], 'highlight')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1533 matrix.highlight = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1534 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1535 matrix.highlight = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1536 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1537
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1538 matrix.matrix = initialize_matrix(network_data);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1539
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1540 matrix.wait_tooltip = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1541
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1542 return matrix;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1543 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1544
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1545 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1546 /* 26 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1547 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1548
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1549 var utils = __webpack_require__(2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1550
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1551 module.exports = function (network_data) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1552 var matrix = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1553 var ini_object;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1554
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1555 var keep_orig;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1556 if (utils.has(network_data.links[0], 'value_orig')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1557 keep_orig = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1558 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1559 keep_orig = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1560 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1561
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1562 network_data.row_nodes.forEach(function (tmp, row_index) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1563
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1564 matrix[row_index] = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1565 matrix[row_index].name = network_data.row_nodes[row_index].name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1566 matrix[row_index].row_index = row_index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1567
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1568 matrix[row_index].row_data = d3.range(network_data.col_nodes.length).map(function (col_index) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1569
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1570 if (utils.has(network_data.links[0], 'value_up') \|\| utils.has(network_data.links[0], 'value_dn')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1571
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1572 ini_object = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1573 pos_x: col_index,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1574 pos_y: row_index,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1575 value: 0,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1576 value_up: 0,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1577 value_dn: 0,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1578 highlight: 0
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1579 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1580 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1581
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1582 ini_object = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1583 pos_x: col_index,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1584 pos_y: row_index,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1585 value: 0,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1586 highlight: 0
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1587 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1588 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1589
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1590 if (keep_orig) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1591 ini_object.value_orig = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1592 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1593
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1594 return ini_object;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1595 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1596 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1597
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1598 network_data.links.forEach(function (link) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1599
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1600 // transfer additional link information is necessary
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1601 matrix[link.source].row_data[link.target].value = link.value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1602 matrix[link.source].row_data[link.target].row_name = link.row_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1603 matrix[link.source].row_data[link.target].col_name = link.col_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1604
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1605 if (utils.has(link, 'value_up') \|\| utils.has(link, 'value_dn')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1606 matrix[link.source].row_data[link.target].value_up = link.value_up;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1607 matrix[link.source].row_data[link.target].value_dn = link.value_dn;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1608 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1609
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1610 if (keep_orig) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1611 matrix[link.source].row_data[link.target].value_orig = link.value_orig;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1612 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1613
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1614 if (link.highlight) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1615 matrix[link.source].row_data[link.target].highlight = link.highlight;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1616 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1617 if (link.info) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1618 matrix[link.source].row_data[link.target].info = link.info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1619 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1620 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1621
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1622 return matrix;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1623 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1624
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1625 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1626 /* 27 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1627 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1628
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1629 var calc_downsampled_matrix = __webpack_require__(28);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1630
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1631 module.exports = function calc_downsampled_levels(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1632
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1633 // console.log('---- before ---------')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1634 // console.log(params.matrix.matrix[0].row_data[0].value)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1635
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1636 // height of downsampled rectangles
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1637 var ds_height = 3;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1638
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1639 var min_rect_height = 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1640
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1641 var total_zoom = ds_height / params.viz.rect_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1642
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1643 // amount of zooming that is tolerated for the downsampled rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1644 var inst_zt = 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1645 params.viz.ds_zt = inst_zt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1646
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1647 var num_levels = Math.floor(Math.log(total_zoom) / Math.log(inst_zt));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1648
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1649 if (params.viz.rect_height < min_rect_height && num_levels > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1650
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1651 // increase ds opacity, as more rows are compressed into a single downsampled
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1652 // row, increase the opacity of the downsampled row. Max increase will be 2x
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1653 // when 100 or more rows are compressed
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1654 var max_opacity_scale = 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1655 params.viz.ds_opacity_scale = d3.scale.linear().domain([1, 100]).range([1, max_opacity_scale]).clamp(true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1656
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1657 var ds;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1658
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1659 params.viz.ds_num_levels = num_levels;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1660
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1661 // array of downsampled parameters
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1662 params.viz.ds = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1663
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1664 // array of downsampled matrices at varying levels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1665 params.matrix.ds_matrix = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1666
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1667 var inst_order = params.viz.inst_order.row;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1668
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1669 // cloning
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1670 var mat = $.extend(true, {}, params.matrix.matrix);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1671
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1672 // calculate parameters for different levels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1673 for (var i = 0; i < num_levels; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1674
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1675 // instantaneous ds_level (-1 means no downsampling)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1676 params.viz.ds_level = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1677
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1678 ds = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1679
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1680 ds.height = ds_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1681 ds.num_levels = num_levels;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1682
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1683 var inst_zoom_tolerance = Math.pow(inst_zt, i);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1684
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1685 ds.zt = inst_zoom_tolerance;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1686
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1687 // the number of downsampled rows is given by the height of the clustergram
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1688 // divided by the adjusted height of the downsampled rect.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1689 // the adjusted height is the height divided by the zooming tolerance of
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1690 // the downsampled layer
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1691
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1692 // number of downsampled rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1693 ds.num_rows = Math.round(params.viz.clust.dim.height / (ds.height / inst_zoom_tolerance));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1694
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1695 // x_scale
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1696 /////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1697 ds.x_scale = d3.scale.ordinal().rangeBands([0, params.viz.clust.dim.width]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1698
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1699 ds.x_scale.domain(params.matrix.orders[inst_order + '_row']);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1700
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1701 // y_scale
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1702 /////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1703 ds.y_scale = d3.scale.ordinal().rangeBands([0, params.viz.clust.dim.height]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1704 ds.y_scale.domain(d3.range(ds.num_rows + 1));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1705
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1706 ds.rect_height = ds.y_scale.rangeBand() - params.viz.border_width.y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1707
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1708 params.viz.ds.push(ds);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1709
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1710 var matrix = calc_downsampled_matrix(params, mat, i);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1711 params.matrix.ds_matrix.push(matrix);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1712 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1713
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1714 // reset row viz_nodes since downsampling
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1715 params.viz.viz_nodes.row = d3.range(params.matrix.ds_matrix[0].length).map(String);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1716 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1717 // set ds to null if no downsampling is done
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1718 params.viz.ds = null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1719 // instantaneous ds_level (-1 means no downsampling)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1720 params.viz.ds_level = -1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1721 params.viz.ds_num_levels = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1722 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1723
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1724 // console.log('---- after ---------')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1725 // console.log(params.matrix.matrix[0].row_data[0].value)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1726 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1727
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1728 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1729 /* 28 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1730 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1731
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1732 module.exports = function calc_downsampled_matrix(params, mat, ds_level) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1733
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1734 var inst_num_rows = params.viz.ds[ds_level].num_rows;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1735
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1736 var num_compressed_rows = params.network_data.row_nodes.length / inst_num_rows;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1737
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1738 // increase ds opacity, as more rows are compressed into a single downsampled
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1739 // row, increase the opacity of the downsampled row.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1740 var opacity_factor = params.viz.ds_opacity_scale(num_compressed_rows);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1741
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1742 var mod_val = params.viz.clust.dim.height / inst_num_rows;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1743
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1744 var ds_mat = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1745 var inst_obj;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1746
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1747 var len_ds_array = inst_num_rows + 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1748
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1749 var i;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1750 var x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1751
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1752 // initialize array of objects
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1753 for (i = 0; i < len_ds_array; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1754
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1755 inst_obj = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1756 inst_obj.row_index = i;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1757 inst_obj.name = String(i);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1758 inst_obj.all_names = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1759
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1760 ds_mat.push(inst_obj);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1761 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1762
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1763 _.each(mat, function (inst_row) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1764
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1765 // row ordering information is contained in y_scale
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1766 var inst_y = params.viz.y_scale(inst_row.row_index);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1767
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1768 var ds_index = Math.round(inst_y / mod_val);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1769
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1770 var inst_row_data = inst_row.row_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1771
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1772 // gather names
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1773 ds_mat[ds_index].all_names.push(inst_row.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1774
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1775 // gather row_data
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1776 if (_.has(ds_mat[ds_index], 'row_data')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1777
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1778 for (x = 0; x < inst_row_data.length; x++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1779 ds_mat[ds_index].row_data[x].value = ds_mat[ds_index].row_data[x].value + inst_row_data[x].value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1780 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1781 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1782
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1783 var new_data = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1784 for (x = 0; x < inst_row_data.length; x++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1785 new_data[x] = inst_row_data[x];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1786 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1787
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1788 ds_mat[ds_index].row_data = new_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1789 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1790 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1791
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1792 // average the values
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1793 _.each(ds_mat, function (tmp_ds) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1794
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1795 var tmp_row_data = tmp_ds.row_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1796
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1797 var num_names = tmp_ds.all_names.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1798
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1799 _.each(tmp_row_data, function (tmp_obj) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1800 tmp_obj.value = tmp_obj.value / num_names * opacity_factor;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1801 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1802 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1803
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1804 // all names were found
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1805 var all_names = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1806
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1807 _.each(ds_mat, function (inst_row) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1808 all_names = all_names.concat(inst_row.all_names);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1809 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1810
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1811 return ds_mat;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1812 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1813
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1814 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1815 /* 29 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1816 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1817
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1818 var calc_zoom_switching = __webpack_require__(30);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1819
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1820 module.exports = function set_zoom_params(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1821
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1822 params.viz.zoom_scale_font = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1823 params.viz.zoom_scale_font.row = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1824 params.viz.zoom_scale_font.col = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1825
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1826 var max_zoom_limit = 0.75;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1827 var half_col_height = params.viz.x_scale.rangeBand() / 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1828 params.viz.square_zoom = params.viz.norm_labels.width.col / half_col_height * max_zoom_limit;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1829
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1830 params.viz = calc_zoom_switching(params.viz);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1831
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1832 return params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1833 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1834
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1835 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1836 /* 30 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1837 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1838
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1839 module.exports = function calc_zoom_switching(viz) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1840
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1841 var width_by_col = viz.clust.dim.width / viz.num_col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1842 var height_by_row = viz.clust.dim.height / viz.num_row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1843
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1844 viz.zoom_ratio = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1845 viz.zoom_ratio.x = width_by_col / height_by_row;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1846 viz.zoom_ratio.y = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1847
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1848 if (viz.zoom_ratio.x < 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1849 viz.zoom_ratio.y = 1 / viz.zoom_ratio.x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1850 viz.zoom_ratio.x = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1851 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1852
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1853 return viz;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1854 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1855
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1856 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1857 /* 31 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1858 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1859
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1860 module.exports = function calc_default_fs(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1861
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1862 params.labels.default_fs_row = params.viz.y_scale.rangeBand() * 1.01;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1863 params.labels.default_fs_col = params.viz.x_scale.rangeBand() * 0.87;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1864
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1865 if (params.labels.default_fs_row > params.labels.max_allow_fs) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1866 params.labels.default_fs_row = params.labels.max_allow_fs;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1867 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1868
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1869 if (params.labels.default_fs_col > params.labels.max_allow_fs) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1870 params.labels.default_fs_col = params.labels.max_allow_fs;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1871 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1872
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1873 return params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1874 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1875
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1876 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1877 /* 32 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1878 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1879
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1880 var calc_cat_params = __webpack_require__(33);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1881 var utils = __webpack_require__(2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1882 var colors = __webpack_require__(34);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1883 var check_if_value_cats = __webpack_require__(35);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1884
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1885 module.exports = function make_cat_params(params, viz, predefined_cat_colors = true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1886
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1887 var super_string = ': ';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1888 var tmp_super;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1889 var inst_info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1890 var inst_color;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1891
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1892 viz.show_categories = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1893 viz.all_cats = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1894 viz.cat_names = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1895 viz.cat_info = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1896
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1897 // this will hold the information for calculating the opacity of the value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1898 // function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1899 var ini_val_opacity = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1900 ini_val_opacity.row = null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1901 ini_val_opacity.col = null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1902
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1903 viz.cat_colors = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1904 viz.cat_colors.value_opacity = ini_val_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1905
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1906 var num_colors = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1907 _.each(['row', 'col'], function (inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1908
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1909 viz.show_categories[inst_rc] = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1910
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1911 viz.all_cats[inst_rc] = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1912 var tmp_keys = _.keys(params.network_data[inst_rc + '_nodes'][0]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1913
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1914 tmp_keys = tmp_keys.sort();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1915
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1916 _.each(tmp_keys, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1917 if (d.indexOf('cat-') >= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1918 viz.show_categories[inst_rc] = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1919 viz.all_cats[inst_rc].push(d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1920 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1921 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1922
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1923 viz.cat_info[inst_rc] = null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1924
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1925 if (viz.show_categories[inst_rc]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1926
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1927 viz.cat_colors[inst_rc] = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1928 viz.cat_info[inst_rc] = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1929 viz.cat_names[inst_rc] = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1930
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1931 _.each(viz.all_cats[inst_rc], function (cat_title) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1932
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1933 var inst_node = params.network_data[inst_rc + '_nodes'][0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1934
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1935 // look for title of category in category name
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1936 if (typeof inst_node[cat_title] === 'string') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1937
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1938 if (inst_node[cat_title].indexOf(super_string) > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1939 tmp_super = inst_node[cat_title].split(super_string)[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1940 viz.cat_names[inst_rc][cat_title] = tmp_super;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1941 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1942 viz.cat_names[inst_rc][cat_title] = cat_title;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1943 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1944 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1945 viz.cat_names[inst_rc][cat_title] = cat_title;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1946 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1947
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1948 var cat_instances_titles = utils.pluck(params.network_data[inst_rc + '_nodes'], cat_title);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1949 var cat_instances = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1950
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1951 _.each(cat_instances_titles, function (inst_cat) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1952
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1953 var new_cat;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1954 if (inst_cat.indexOf(': ') > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1955 new_cat = inst_cat.split(': ')[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1956 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1957 new_cat = inst_cat;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1958 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1959
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1960 cat_instances.push(new_cat);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1961 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1962
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1963 var cat_states = _.uniq(cat_instances_titles).sort();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1964
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1965 // check whether all the categories are of value type
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1966 inst_info = check_if_value_cats(cat_states);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1967
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1968 // add histogram to inst_info
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1969 if (inst_info.type === 'cat_strings') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1970 // remove titles from categories in hist
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1971 var cat_hist = _.countBy(cat_instances);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1972 inst_info.cat_hist = cat_hist;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1973 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1974 inst_info.cat_hist = null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1975 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1976
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1977 // pass info_info object
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1978 viz.cat_info[inst_rc][cat_title] = inst_info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1979
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1980 viz.cat_colors[inst_rc][cat_title] = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1981
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1982 _.each(cat_states, function (cat_tmp, inst_index) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1983
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1984 inst_color = colors.get_random_color(inst_index + num_colors);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1985
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1986 viz.cat_colors[inst_rc][cat_title][cat_tmp] = inst_color;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1987
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1988 // hack to get 'Not' categories to not be dark colored
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1989 // also doing this for false
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1990 if (typeof cat_tmp === 'string') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1991 if (cat_tmp.indexOf('Not ') >= 0 \|\| cat_tmp.indexOf(': false') > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1992 viz.cat_colors[inst_rc][cat_title][cat_tmp] = '#eee';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1993 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1994 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1995
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1996 num_colors = num_colors + 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1997 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1998 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	1999 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2000
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2001 if (_.has(params.network_data, 'cat_colors') && predefined_cat_colors === true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2002 viz.cat_colors[inst_rc] = params.network_data.cat_colors[inst_rc];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2003 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2004
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2005 if (params.sim_mat) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2006 // sending row color info to columns since row color info can be updated
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2007 viz.cat_colors.col = viz.cat_colors.row;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2008 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2009 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2010
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2011 viz.cat_colors = viz.cat_colors;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2012
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2013 viz.cat_colors.opacity = 0.6;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2014 viz.cat_colors.active_opacity = 0.9;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2015
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2016 viz = calc_cat_params(params, viz);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2017
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2018 return viz;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2019 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2020
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2021 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2022 /* 33 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2023 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2024
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2025 module.exports = function calc_cat_params(params, viz) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2026
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2027 var separtion_room;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2028
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2029 // increase the width of the label container based on the label length
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2030 var label_scale = d3.scale.linear().domain([5, 15]).range([85, 120]).clamp('true');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2031
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2032 viz.cat_room = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2033 viz.cat_room.symbol_width = 12;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2034 viz.cat_room.separation = 3;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2035
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2036 _.each(['row', 'col'], function (inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2037
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2038 viz.norm_labels.width[inst_rc] = label_scale(params.labels[inst_rc + '_max_char']) * params[inst_rc + '_label_scale'];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2039
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2040 viz['num_' + inst_rc + '_nodes'] = params.network_data[inst_rc + '_nodes'].length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2041
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2042 // if (_.has(config, 'group_level')){
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2043 // config.group_level[inst_rc] = 5;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2044 // }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2045
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2046 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2047 viz.dendro_room[inst_rc] = viz.dendro_room.symbol_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2048 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2049 viz.dendro_room[inst_rc] = viz.dendro_room.symbol_width + 3 * viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2050 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2051
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2052 var num_cats = viz.all_cats[inst_rc].length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2053
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2054 if (viz.show_categories[inst_rc]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2055
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2056 separtion_room = (num_cats - 1) * viz.cat_room.separation;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2057
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2058 var adjusted_cats;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2059 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2060 adjusted_cats = num_cats + 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2061 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2062 adjusted_cats = num_cats;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2063 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2064
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2065 viz.cat_room[inst_rc] = adjusted_cats * viz.cat_room.symbol_width + separtion_room;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2066 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2067 // no categories
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2068 if (inst_rc == 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2069 viz.cat_room[inst_rc] = viz.cat_room.symbol_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2070 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2071 viz.cat_room[inst_rc] = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2072 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2073 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2074 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2075
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2076 return viz;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2077 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2078
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2079 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2080 /* 34 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2081 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2082
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2083 // colors from http://graphicdesign.stackexchange.com/revisions/3815/8
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2084 var all_colors;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2085
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2086 all_colors = ["#393b79", "#aec7e8", "#ff7f0e", "#ffbb78", "#98df8a", "#bcbd22", "#404040", "#ff9896", "#c5b0d5", "#8c564b", "#1f77b4", "#5254a3", "#FFDB58", "#c49c94", "#e377c2", "#7f7f7f", "#2ca02c", "#9467bd", "#dbdb8d", "#17becf", "#637939", "#6b6ecf", "#9c9ede", "#d62728", "#8ca252", "#8c6d31", "#bd9e39", "#e7cb94", "#843c39", "#ad494a", "#d6616b", "#7b4173", "#a55194", "#ce6dbd", "#de9ed6"];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2087
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2088 // too light colors
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2089 // "#e7969c",
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2090 // "#c7c7c7",
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2091 // "#f7b6d2",
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2092 // "#cedb9c",
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2093 // "#9edae5",
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2094
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2095 function get_default_color() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2096 return '#EEE';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2097 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2098
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2099 function get_random_color(i) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2100 return all_colors[i % get_num_colors()];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2101 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2102
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2103 function get_num_colors() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2104 return all_colors.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2105 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2106
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2107 module.exports = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2108 get_default_color: get_default_color,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2109 get_random_color: get_random_color,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2110 get_num_colors: get_num_colors
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2111 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2112
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2113 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2114 /* 35 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2115 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2116
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2117 module.exports = function check_if_value_cats(cat_states) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2118
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2119 var tmp_cat = cat_states[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2120
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2121 var has_title = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2122 var might_have_values = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2123 var cat_types = 'cat_strings';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2124 var max_abs_val = NaN;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2125 var all_values = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2126 var cat_scale = null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2127
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2128 var super_string = ': ';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2129
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2130 if (typeof tmp_cat === 'string') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2131 if (tmp_cat.indexOf(super_string) > -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2132 has_title = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2133 tmp_cat = tmp_cat.split(super_string)[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2134 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2135 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2136
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2137 if (isNaN(tmp_cat) == false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2138 might_have_values = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2139 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2140
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2141 // check each value for number
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2142 if (might_have_values) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2143
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2144 // the default state is that all are now values, check each one
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2145 cat_types = 'cat_values';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2146
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2147 _.each(cat_states, function (inst_cat) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2148
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2149 if (has_title) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2150 inst_cat = inst_cat.split(super_string)[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2151 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2152
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2153 // checking whether inst_cat is 'not a number'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2154 if (isNaN(inst_cat) === true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2155 cat_types = 'cat_strings';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2156 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2157 inst_cat = parseFloat(inst_cat);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2158 all_values.push(inst_cat);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2159 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2160 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2161 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2162
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2163 if (cat_types === 'cat_values') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2164
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2165 // get absolute value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2166 var max_value = _.max(all_values, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2167 return Math.abs(d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2168 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2169
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2170 max_abs_val = Math.abs(max_value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2171
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2172 cat_scale = d3.scale.linear().domain([0, max_abs_val]).range([0, 1]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2173 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2174
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2175 var inst_info = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2176 inst_info.type = cat_types;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2177 inst_info.max_abs_val = max_abs_val;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2178 inst_info.cat_scale = cat_scale;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2179
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2180 return inst_info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2181 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2182
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2183 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2184 /* 36 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2185 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2186
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2187 module.exports = function ini_zoom_info() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2188
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2189 var zoom_info = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2190 zoom_info.zoom_x = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2191 zoom_info.zoom_y = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2192 zoom_info.trans_x = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2193 zoom_info.trans_y = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2194
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2195 return zoom_info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2196 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2197
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2198 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2199 /* 37 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2200 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2201
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2202 var generate_matrix = __webpack_require__(38);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2203 var make_row_label_container = __webpack_require__(49);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2204 var make_col_label_container = __webpack_require__(103);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2205 var generate_super_labels = __webpack_require__(111);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2206 var spillover = __webpack_require__(112);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2207 var initialize_resizing = __webpack_require__(123);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2208 var ini_doubleclick = __webpack_require__(133);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2209 var make_col_cat = __webpack_require__(152);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2210 var make_row_cat = __webpack_require__(158);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2211 var trim_text = __webpack_require__(118);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2212 var make_row_dendro = __webpack_require__(159);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2213 var make_col_dendro = __webpack_require__(160);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2214 var make_svg_dendro_sliders = __webpack_require__(161);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2215 var make_row_dendro_spillover = __webpack_require__(164);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2216
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2217 module.exports = function make_viz(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2218
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2219 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2220
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2221 d3.select(params.viz.viz_wrapper + ' svg').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2222
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2223 var svg_group = d3.select(params.viz.viz_wrapper).append('svg').attr('class', 'viz_svg').attr('id', 'svg_' + params.root.replace('#', '')).attr('width', params.viz.svg_dim.width).attr('height', params.viz.svg_dim.height).attr('is_zoom', 0).attr('stopped_zoom', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2224
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2225 svg_group.append('rect').attr('class', 'super_background').style('width', params.viz.svg_dim.width).style('height', params.viz.svg_dim.height).style('fill', 'white');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2226
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2227 generate_matrix(params, svg_group);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2228
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2229 make_row_label_container(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2230
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2231 if (params.viz.show_dendrogram) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2232 make_row_dendro(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2233 make_col_dendro(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2234 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2235
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2236 make_row_dendro_spillover(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2237
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2238 make_col_label_container(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2239
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2240 // initial trim text
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2241 if (params.viz.ds_level === -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2242 _.each(['row', 'col'], function (inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2243
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2244 var inst_fs = Number(d3.select('.' + inst_rc + '_label_group').select('text').style('font-size').replace('px', ''));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2245
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2246 var min_trim_fs = 8;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2247 if (inst_fs > min_trim_fs) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2248 d3.selectAll(params.root + ' .' + inst_rc + '_label_group').each(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2249 trim_text(params, this, inst_rc);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2250 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2251 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2252 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2253 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2254
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2255 // make category colorbars
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2256 make_row_cat(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2257 if (params.viz.show_categories.col) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2258 make_col_cat(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2259 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2260
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2261 spillover(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2262
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2263 if (params.labels.super_labels) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2264 generate_super_labels(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2265 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2266
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2267 // sliders should go above super labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2268 make_svg_dendro_sliders(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2269
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2270 function border_colors() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2271 var inst_color = params.viz.super_border_color;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2272 if (params.viz.is_expand \|\| params.show_viz_border == false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2273 inst_color = 'white';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2274 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2275 return inst_color;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2276 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2277
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2278 // left border
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2279 d3.select(params.viz.viz_svg).append('rect').classed('left_border', true).classed('borders', true).attr('fill', border_colors).attr('width', params.viz.grey_border_width).attr('height', params.viz.svg_dim.height).attr('transform', 'translate(0,0)');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2280
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2281 // right border
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2282 d3.select(params.viz.viz_svg).append('rect').classed('right_border', true).classed('borders', true).attr('fill', border_colors).attr('width', params.viz.grey_border_width).attr('height', params.viz.svg_dim.height).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2283 var inst_offset = params.viz.svg_dim.width - params.viz.grey_border_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2284 return 'translate(' + inst_offset + ',0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2285 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2286
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2287 // top border
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2288 d3.select(params.viz.viz_svg).append('rect').classed('top_border', true).classed('borders', true).attr('fill', border_colors).attr('width', params.viz.svg_dim.width).attr('height', params.viz.grey_border_width).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2289 var inst_offset = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2290 return 'translate(' + inst_offset + ',0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2291 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2292
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2293 // bottom border
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2294 d3.select(params.viz.viz_svg).append('rect').classed('bottom_border', true).classed('borders', true).attr('fill', border_colors).attr('width', params.viz.svg_dim.width).attr('height', params.viz.grey_border_width).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2295 var inst_offset = params.viz.svg_dim.height - params.viz.grey_border_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2296 return 'translate(0,' + inst_offset + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2297 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2298
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2299 initialize_resizing(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2300
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2301 ini_doubleclick(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2302
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2303 if (params.viz.do_zoom) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2304 d3.select(params.viz.zoom_element).call(params.zoom_behavior);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2305 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2306
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2307 d3.select(params.viz.zoom_element).on('dblclick.zoom', null);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2308 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2309
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2310 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2311 /* 38 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2312 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2313
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2314 var utils = __webpack_require__(2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2315 var draw_gridlines = __webpack_require__(39);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2316 var add_click_hlight = __webpack_require__(40);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2317 var make_matrix_rows = __webpack_require__(41);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2318
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2319 module.exports = function (params, svg_elem) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2320 var network_data = params.network_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2321
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2322 var matrix = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2323 var clust_group;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2324
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2325 // append a group that will hold clust_group and position it once
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2326 clust_group = svg_elem.append('g').attr('class', 'clust_container').attr('transform', 'translate(' + params.viz.clust.margin.left + ',' + params.viz.clust.margin.top + ')').append('g').attr('class', 'clust_group').classed('clust_group', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2327
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2328 // clustergram background rect
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2329 clust_group.append('rect').classed('background', true).classed('grey_background', true).style('fill', '#eee').style('opacity', 0.25).attr('width', params.viz.clust.dim.width).attr('height', params.viz.clust.dim.height);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2330
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2331 // pass in params and the rows (row_nodes) that need to be made
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2332 // in this case all row nodes
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2333 // make_matrix_rows(params, params.matrix.matrix, params.network_data.row_nodes_names);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2334
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2335 // initialize at ds_level 0
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2336 if (params.viz.ds === null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2337 // do not use downsampled matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2338 make_matrix_rows(params, params.matrix.matrix, 'all', params.viz.ds_level);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2339 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2340 // use downsampled matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2341 make_matrix_rows(params, params.matrix.ds_matrix[0], 'all', params.viz.ds_level);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2342 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2343
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2344 // add callback function to tile group - if one is supplied by the user
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2345 if (typeof params.click_tile === 'function') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2346 d3.selectAll(params.root + ' .tile').on('click', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2347
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2348 // export row/col name and value from tile
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2349 var tile_info = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2350 tile_info.row = params.network_data.row_nodes[d.pos_y].name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2351 tile_info.col = params.network_data.col_nodes[d.pos_x].name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2352 tile_info.value = d.value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2353
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2354 if (utils.has(d, 'value_up')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2355 tile_info.value_up = d.value_up;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2356 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2357 if (utils.has(d, 'value_dn')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2358 tile_info.value_dn = d.value_dn;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2359 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2360 if (utils.has(d, 'info')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2361 tile_info.info = d.info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2362 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2363 // run the user supplied callback function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2364 params.click_tile(tile_info);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2365 add_click_hlight(params, this);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2366 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2367 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2368
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2369 // highlight clicked tile
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2370 if (params.tile_click_hlight) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2371 d3.selectAll(params.root + ' .tile').on('click', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2372 add_click_hlight(params, this);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2373 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2374 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2375 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2376
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2377 // draw grid lines after drawing tiles
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2378 var delays = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2379 var duration = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2380 delays.enter = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2381 draw_gridlines(params, delays, duration);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2382
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2383 // Matrix API
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2384 return {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2385 get_clust_group: function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2386 return clust_group;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2387 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2388 get_matrix: function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2389 return matrix;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2390 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2391 get_nodes: function (type) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2392 if (type === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2393 return network_data.row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2394 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2395 return network_data.col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2396 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2397 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2398 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2399
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2400 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2401 /* 39 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2402 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2403
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2404 // var grid_lines_viz = require('./grid_lines_viz');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2405 // var toggle_grid_lines = require('./toggle_grid_lines');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2406
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2407 module.exports = function draw_gridlines(params, delays, duration) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2408
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2409 // var row_nodes = params.network_data.row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2410 // var col_nodes = params.network_data.col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2411
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2412 // // Fade in new gridlines
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2413 // ///////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2414
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2415 // // append horizontal line groups
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2416 // var horz_lines = d3.select(params.root+' .clust_group')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2417 // .selectAll('.horz_lines')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2418 // .data(row_nodes, function(d){return d.name;})
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2419 // .enter()
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2420 // .append('g')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2421 // .attr('class','horz_lines');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2422
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2423 // // append vertical line groups
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2424 // var vert_lines = d3.select(params.root+' .clust_group')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2425 // .selectAll('.vert_lines')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2426 // .data(col_nodes)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2427 // .enter()
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2428 // .append('g')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2429 // .attr('class', 'vert_lines');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2430
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2431 // grid_lines_viz(params, duration);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2432
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2433 // horz_lines
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2434 // .select('line')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2435 // .attr('opacity',0)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2436 // .attr('stroke','white')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2437 // .attr('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2438
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2439 // vert_lines
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2440 // .select('line')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2441 // .style('stroke', 'white')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2442 // .attr('opacity',0)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2443 // .transition().delay(delays.enter).duration(2*duration)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2444 // .attr('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2445
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2446 // toggle_grid_lines(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2447
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2448 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2449
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2450 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2451 /* 40 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2452 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2453
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2454 module.exports = function (params, clicked_rect) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2455
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2456 // get x position of rectangle
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2457 d3.select(clicked_rect).each(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2458 var pos_x = d.pos_x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2459 var pos_y = d.pos_y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2460
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2461 d3.selectAll(params.root + ' .click_hlight').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2462
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2463 if (pos_x != params.matrix.click_hlight_x \|\| pos_y != params.matrix.click_hlight_y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2464
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2465 // save pos_x to params.viz.click_hlight_x
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2466 params.matrix.click_hlight_x = pos_x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2467 params.matrix.click_hlight_y = pos_y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2468
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2469 // draw the highlighting rectangle as four rectangles
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2470 // so that the width and height can be controlled
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2471 // separately
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2472
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2473 var rel_width_hlight = 6;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2474 var opacity_hlight = 0.85;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2475
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2476 var hlight_width = rel_width_hlight * params.viz.border_width.x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2477 var hlight_height = rel_width_hlight * params.viz.border_width.y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2478
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2479 // top highlight
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2480 d3.select(clicked_rect.parentNode).append('rect').classed('click_hlight', true).classed('top_hlight', true).attr('width', params.viz.x_scale.rangeBand()).attr('height', hlight_height).attr('fill', params.matrix.hlight_color).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2481 return 'translate(' + params.viz.x_scale(pos_x) + ',0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2482 }).attr('opacity', opacity_hlight);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2483
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2484 // left highlight
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2485 d3.select(clicked_rect.parentNode)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2486 .append('rect')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2487 .classed('click_hlight', true)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2488 .classed('left_hlight', true)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2489 .attr('width', hlight_width)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2490 .attr('height', params.viz.y_scale.rangeBand() - hlight_height * 0.99)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2491 .attr('fill', params.matrix.hlight_color).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2492 return "translate(" + params.viz.x_scale(pos_x) + "," + hlight_height * 0.99 + ")";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2493 })
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2494 .attr('opacity', opacity_hlight);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2495
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2496 // right highlight
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2497 d3.select(clicked_rect.parentNode).append('rect').classed('click_hlight', true).classed('right_hlight', true).attr('width', hlight_width).attr('height', params.viz.y_scale.rangeBand() - hlight_height * 0.99).attr('fill', params.matrix.hlight_color).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2498 var tmp_translate = params.viz.x_scale(pos_x) + params.viz.x_scale.rangeBand() - hlight_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2499 return 'translate(' + tmp_translate + ',' + hlight_height * 0.99 + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2500 }).attr('opacity', opacity_hlight);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2501
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2502 // bottom highlight
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2503 d3.select(clicked_rect.parentNode).append('rect').classed('click_hlight', true).classed('bottom_hlight', true).attr('width', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2504 return params.viz.x_scale.rangeBand() - 1.98 * hlight_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2505 }).attr('height', hlight_height).attr('fill', params.matrix.hlight_color).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2506 var tmp_translate_x = params.viz.x_scale(pos_x) + hlight_width * 0.99;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2507 var tmp_translate_y = params.viz.y_scale.rangeBand() - hlight_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2508 return 'translate(' + tmp_translate_x + ',' + tmp_translate_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2509 }).attr('opacity', opacity_hlight);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2510 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2511 params.matrix.click_hlight_x = -666;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2512 params.matrix.click_hlight_y = -666;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2513 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2514 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2515 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2516
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2517 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2518 /* 41 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2519 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2520
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2521 var make_simple_rows = __webpack_require__(42);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2522 var d3_tip_custom = __webpack_require__(48);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2523
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2524 // current matrix can change with downsampling
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2525 module.exports = function make_matrix_rows(params, current_matrix, row_names = 'all', ds_level = -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2526
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2527 // defaults
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2528 var y_scale = params.viz.y_scale;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2529 var make_tip = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2530 var row_class = 'row';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2531
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2532 if (ds_level >= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2533 y_scale = params.viz.ds[ds_level].y_scale;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2534
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2535 // do not show tip when rows are downsampled
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2536 make_tip = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2537 row_class = 'ds' + String(ds_level) + '_row';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2538 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2539
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2540 if (make_tip) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2541
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2542 // do not remove tile_tip here
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2543 /////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2544
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2545 // make rows in the matrix - add key names to rows in matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2546 /////////////////////////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2547 // d3-tooltip - for tiles
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2548 var tip = d3_tip_custom().attr('class', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2549 var root_tip_selector = params.viz.root_tips.replace('.', '');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2550 var class_string = root_tip_selector + ' d3-tip ' + root_tip_selector + '_tile_tip';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2551 return class_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2552 }).style('display', 'none').direction('nw').offset([0, 0]).html(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2553 var inst_value = String(d.value.toFixed(3));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2554 var tooltip_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2555
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2556 if (params.keep_orig) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2557 var orig_value = String(d.value_orig.toFixed(3));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2558 tooltip_string = '<p>' + d.row_name + ' and ' + d.col_name + '</p>' + '<p> normalized value: ' + inst_value + '</p>' + '<div> original value: ' + orig_value + '</div>';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2559 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2560 tooltip_string = '<p>' + d.row_name + ' and ' + d.col_name + '</p>' + '<div> value: ' + inst_value + '</div>';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2561 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2562
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2563 return tooltip_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2564 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2565 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2566 tip = null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2567 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2568
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2569 // gather a subset of row data from the matrix or use all rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2570 var matrix_subset = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2571 if (row_names === 'all') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2572 matrix_subset = current_matrix;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2573 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2574 _.each(current_matrix, function (inst_row) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2575 if (_.contains(row_names, inst_row.name)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2576 matrix_subset.push(inst_row);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2577 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2578 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2579 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2580
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2581 d3.select(params.root + ' .clust_group').selectAll('.row').data(matrix_subset, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2582 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2583 }).enter().append('g').classed(row_class, true).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2584 return 'translate(0,' + y_scale(d.row_index) + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2585 }).each(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2586 make_simple_rows(params, d, tip, this, ds_level);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2587 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2588
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2589 if (params.viz.ds_level === -1 && tip != null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2590 d3.selectAll(params.root + ' .row').call(tip);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2591 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2592 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2593
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2594 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2595 /* 42 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2596 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2597
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2598 /* eslint-disable */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2599
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2600 var draw_up_tile = __webpack_require__(43);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2601 var draw_dn_tile = __webpack_require__(44);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2602 var mouseover_tile = __webpack_require__(45);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2603 var mouseout_tile = __webpack_require__(46);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2604 var fine_position_tile = __webpack_require__(47);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2605
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2606 module.exports = function make_simple_rows(params, inst_data, tip, row_selection, ds_level = -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2607
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2608 var inp_row_data = inst_data.row_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2609
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2610 var make_tip = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2611 var rect_height = params.viz.rect_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2612 if (ds_level >= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2613 // make_tip = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2614 rect_height = params.viz.ds[ds_level].rect_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2615 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2616
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2617 var keep_orig;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2618 if (_.has(params.network_data.links[0], 'value_orig')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2619 keep_orig = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2620 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2621 keep_orig = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2622 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2623
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2624 var row_values;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2625 if (keep_orig === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2626 // value: remove zero values to make visualization faster
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2627 row_values = _.filter(inp_row_data, function (num) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2628 return num.value !== 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2629 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2630 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2631 row_values = inp_row_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2632 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2633
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2634 // generate tiles in the current row
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2635 var tile = d3.select(row_selection).selectAll('rect').data(row_values, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2636 return d.col_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2637 }).enter().append('rect').attr('class', 'tile row_tile').attr('width', params.viz.rect_width).attr('height', rect_height).style('fill', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2638 // switch the color based on up/dn value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2639 var inst_fill;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2640 if (d.value_orig === 'NaN') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2641 inst_fill = '#000000';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2642 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2643 inst_fill = d.value > params.matrix.mid_val ? params.matrix.tile_colors[0] : params.matrix.tile_colors[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2644 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2645 return inst_fill;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2646 }).style('fill-opacity', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2647 // calculate output opacity using the opacity scale
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2648 var inst_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2649 if (d.value_orig === 'NaN') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2650 // console.log('found NaN while making tiles');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2651 inst_opacity = 0.175;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2652 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2653 var op_val = params.matrix.mid_val + Math.abs(d.value - params.matrix.mid_val);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2654
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2655 inst_opacity = params.matrix.opacity_scale(op_val);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2656 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2657 return inst_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2658 }).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2659 return fine_position_tile(params, d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2660 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2661
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2662 if (make_tip) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2663 tile.on('mouseover', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2664 for (var _len = arguments.length, args = Array(_len), _key = 0; _key < _len; _key++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2665 args[_key] = arguments[_key];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2666 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2667 mouseover_tile(params, this, tip, args);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2668 }).on('mouseout', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2669 mouseout_tile(params, this, tip);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2670 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2671 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2672
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2673 // // tile circles
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2674 // /////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2675 // var tile = d3.select(row_selection)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2676 // .selectAll('circle')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2677 // .data(row_values, function(d){ return d.col_name; })
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2678 // .enter()
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2679 // .append('circle')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2680 // .attr('cx', params.viz.rect_height/2)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2681 // .attr('cy', params.viz.rect_height/2)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2682 // .attr('r', params.viz.rect_height/3)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2683 // .attr('class', 'tile_circle')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2684 // // .attr('width', params.viz.rect_width/2)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2685 // // .attr('height', params.viz.rect_height/2)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2686 // // // switch the color based on up/dn value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2687 // // .style('fill', function(d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2688 // // // return d.value > 0 ? params.matrix.tile_colors[0] : params.matrix.tile_colors[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2689 // // return 'black';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2690 // // })
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2691 // .on('mouseover', function(...args) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2692 // mouseover_tile(params, this, tip, args);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2693 // })
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2694 // .on('mouseout', function() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2695 // mouseout_tile(params, this, tip);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2696 // })
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2697 // .style('fill-opacity', function(d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2698 // // calculate output opacity using the opacity scale
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2699 // var output_opacity = params.matrix.opacity_scale(Math.abs(d.value));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2700 // if (output_opacity < 0.3){
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2701 // output_opacity = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2702 // } else if (output_opacity < 0.6){
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2703 // output_opacity = 0.35;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2704 // } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2705 // output_opacity = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2706 // }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2707 // return output_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2708 // // return 0.1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2709 // })
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2710 // .attr('transform', function(d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2711 // return fine_position_tile(params, d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2712 // });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2713
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2714
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2715 if (params.matrix.tile_type == 'updn') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2716
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2717 // value split
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2718 var row_split_data = _.filter(inp_row_data, function (num) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2719 return num.value_up != 0 \|\| num.value_dn != 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2720 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2721
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2722 // tile_up
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2723 d3.select(row_selection).selectAll('.tile_up').data(row_split_data, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2724 return d.col_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2725 }).enter().append('path').attr('class', 'tile_up').attr('d', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2726 return draw_up_tile(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2727 }).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2728 fine_position_tile(params, d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2729 }).style('fill', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2730 return params.matrix.tile_colors[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2731 }).style('fill-opacity', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2732 var inst_opacity = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2733 if (Math.abs(d.value_dn) > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2734 inst_opacity = params.matrix.opacity_scale(Math.abs(d.value_up));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2735 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2736 return inst_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2737 }).on('mouseover', function (...args) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2738 mouseover_tile(params, this, tip, args);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2739 }).on('mouseout', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2740 mouseout_tile(params, this, tip);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2741 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2742
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2743 // tile_dn
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2744 d3.select(row_selection).selectAll('.tile_dn').data(row_split_data, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2745 return d.col_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2746 }).enter().append('path').attr('class', 'tile_dn').attr('d', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2747 return draw_dn_tile(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2748 }).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2749 fine_position_tile(params, d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2750 }).style('fill', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2751 return params.matrix.tile_colors[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2752 }).style('fill-opacity', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2753 var inst_opacity = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2754 if (Math.abs(d.value_up) > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2755 inst_opacity = params.matrix.opacity_scale(Math.abs(d.value_dn));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2756 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2757 return inst_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2758 }).on('mouseover', function (...args) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2759 mouseover_tile(params, this, tip, args);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2760 }).on('mouseout', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2761 mouseout_tile(params, this, tip);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2762 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2763
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2764 // remove rect when tile is split
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2765 tile.each(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2766 if (Math.abs(d.value_up) > 0 && Math.abs(d.value_dn) > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2767 d3.select(this).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2768 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2769 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2770 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2771
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2772 // append title to group
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2773 if (params.matrix.tile_title) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2774 tile.append('title').text(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2775 var inst_string = 'value: ' + d.value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2776 return inst_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2777 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2778 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2779 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2780
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2781 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2782 /* 43 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2783 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2784
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2785 module.exports = function draw_up_tile(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2786
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2787 var start_x = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2788 var final_x = params.viz.x_scale.rangeBand() - params.viz.border_width.x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2789 var start_y = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2790 var final_y = params.viz.y_scale.rangeBand() - params.viz.border_width.y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2791
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2792 var output_string = 'M' + start_x + ',' + start_y + ', L' + start_x + ', ' + final_y + ', L' + final_x + ',0 Z';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2793
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2794 return output_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2795 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2796
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2797 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2798 /* 44 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2799 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2800
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2801 module.exports = function draw_dn_tile(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2802
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2803 var start_x = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2804 var final_x = params.viz.x_scale.rangeBand() - params.viz.border_width.x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2805 var start_y = params.viz.y_scale.rangeBand() - params.viz.border_width.y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2806 var final_y = params.viz.y_scale.rangeBand() - params.viz.border_width.y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2807
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2808 var output_string = 'M' + start_x + ', ' + start_y + ' , L' + final_x + ', ' + final_y + ', L' + final_x + ',0 Z';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2809
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2810 return output_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2811 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2812
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2813 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2814 /* 45 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2815 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2816
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2817 module.exports = function mouseover_tile(params, inst_selection, tip, inst_arguments) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2818
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2819 var inst_data = inst_arguments[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2820 var args = [].slice.call(inst_arguments);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2821 var timeout;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2822 var delay = 1000;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2823
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2824 d3.select(inst_selection).classed('hovering', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2825
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2826 _.each(['row', 'col'], function (inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2827
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2828 d3.selectAll(params.root + ' .' + inst_rc + '_label_group text').style('font-weight', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2829 var font_weight;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2830 var inst_found = inst_data[inst_rc + '_name'].replace(/_/g, ' ') === d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2831
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2832 if (inst_found) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2833 font_weight = 'bold';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2834 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2835 font_weight = 'normal';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2836 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2837 return font_weight;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2838 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2839 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2840
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2841 args.push(inst_selection);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2842 clearTimeout(timeout);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2843 timeout = setTimeout(check_if_hovering, delay, inst_selection);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2844
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2845 function check_if_hovering() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2846
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2847 if (d3.select(inst_selection).classed('hovering')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2848
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2849 var inst_zoom = Number(d3.select(params.root + ' .viz_svg').attr('is_zoom'));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2850
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2851 if (inst_zoom === 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2852
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2853 if (params.matrix.show_tile_tooltips && tip !== null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2854
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2855 d3.selectAll(params.viz.root_tips + '_tile_tip').style('display', 'block');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2856
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2857 tip.show.apply(inst_selection, args);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2858
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2859 if (params.tile_tip_callback != null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2860 var tile_info = args[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2861 params.tile_tip_callback(tile_info);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2862 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2863 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2864 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2865 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2866 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2867 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2868
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2869 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2870 /* 46 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2871 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2872
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2873 module.exports = function mouseout_tile(params, inst_selection, tip) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2874
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2875 d3.select(inst_selection).classed('hovering', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2876
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2877 d3.selectAll(params.viz.root_tips + '_tile_tip').style('display', 'none');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2878
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2879 _.each(['row', 'col'], function (inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2880
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2881 d3.selectAll(params.root + ' .' + inst_rc + '_label_group text').style('font-weight', 'normal');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2882 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2883
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2884 if (tip != null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2885 tip.hide();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2886 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2887 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2888
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2889 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2890 /* 47 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2891 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2892
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2893 module.exports = function fine_position_tile(params, d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2894
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2895 var offset_x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2896
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2897 // prevent rows not in x_scale domain from causing errors
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2898 if (d.pos_x in params.viz.x_scale.domain()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2899 offset_x = params.viz.x_scale(d.pos_x);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2900 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2901 offset_x = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2902 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2903
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2904 var x_pos = offset_x + 0.5 * params.viz.border_width.x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2905 var y_pos = 0.5 * params.viz.border_width.y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2906 return 'translate(' + x_pos + ',' + y_pos + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2907 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2908
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2909 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2910 /* 48 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2911 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2912
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2913 module.exports = function d3_tip_custom() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2914 /* eslint-disable */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2915 // Copyright (c) 2013 Justin Palmer
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2916 //
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2917 // Tooltips for d3.js SVG visualizations
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2918
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2919 // Public - contructs a new tooltip
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2920 //
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2921 // Returns a tip
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2922 // ******************
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2923 // Nick Fernandez modified version 4-19-2016
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2924 // improved multiple svg, scrolling+zooming support
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2925 // made syntax fixes
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2926 //////////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2927 var direction = d3_tip_direction,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2928 offset = d3_tip_offset,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2929 html = d3_tip_html,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2930 node = initNode(),
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2931 svg = null,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2932 point = null,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2933 target = null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2934
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2935 function tip(vis) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2936 svg = getSVGNode(vis);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2937 point = svg.createSVGPoint();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2938 document.body.appendChild(node);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2939 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2940
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2941 // Public - show the tooltip on the screen
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2942 //
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2943 // Returns a tip
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2944 tip.show = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2945
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2946 var args = Array.prototype.slice.call(arguments);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2947 if (args[args.length - 1] instanceof SVGElement) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2948 target = args.pop();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2949 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2950
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2951 var content = html.apply(this, args);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2952 var poffset = offset.apply(this, args);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2953 var dir = direction.apply(this, args);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2954 var nodel = d3.select(node);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2955 var i = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2956 var coords;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2957
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2958 // add z-index to make sure tooltips appear on top
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2959 nodel.html(content).style({ opacity: 1, 'pointer-events': 'all' }).style('z-index', 99);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2960
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2961 while (i--) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2962 nodel.classed(directions[i], false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2963 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2964 coords = direction_callbacks.get(dir).apply(this);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2965 nodel.classed(dir, true).style({
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2966 top: coords.top + poffset[0] + 'px',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2967 left: coords.left + poffset[1] + 'px'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2968 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2969
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2970 // quick fix for fading tile tooltips
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2971 if (isFunction(this) === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2972
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2973 var inst_class = d3.select(this).attr('class');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2974
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2975 if (inst_class.indexOf('tile') >= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2976 setTimeout(fade_tips, 5000, this);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2977 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2978 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2979
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2980 return tip;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2981 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2982
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2983 // Public - hide the tooltip
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2984 //
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2985 // Returns a tip
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2986 tip.hide = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2987
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2988 // // hide all d3-tip tooltips
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2989 // d3.selectAll('.d3-tip')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2990 // .style('display', 'none');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2991
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2992 var nodel = d3.select(node);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2993 nodel.style({ opacity: 0, 'pointer-events': 'none' });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2994 return tip;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2995 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2996
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2997 // Public: Proxy attr calls to the d3 tip container. Sets or gets attribute value.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2998 //
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	2999 // n - name of the attribute
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3000 // v - value of the attribute
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3001 //
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3002 // Returns tip or attribute value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3003 tip.attr = function (n) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3004 if (arguments.length < 2 && typeof n === 'string') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3005 return d3.select(node).attr(n);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3006 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3007 var args = Array.prototype.slice.call(arguments);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3008 d3.selection.prototype.attr.apply(d3.select(node), args);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3009 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3010
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3011 return tip;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3012 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3013
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3014 // Public: Proxy style calls to the d3 tip container. Sets or gets a style value.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3015 //
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3016 // n - name of the property
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3017 // v - value of the property
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3018 //
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3019 // Returns tip or style property value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3020 tip.style = function (n) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3021 if (arguments.length < 2 && typeof n === 'string') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3022 return d3.select(node).style(n);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3023 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3024 var args = Array.prototype.slice.call(arguments);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3025 d3.selection.prototype.style.apply(d3.select(node), args);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3026 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3027
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3028 return tip;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3029 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3030
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3031 // Public: Set or get the direction of the tooltip
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3032 //
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3033 // v - One of n(north), s(south), e(east), or w(west), nw(northwest),
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3034 // sw(southwest), ne(northeast) or se(southeast)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3035 //
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3036 // Returns tip or direction
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3037 tip.direction = function (v) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3038 if (!arguments.length) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3039 return direction;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3040 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3041 direction = v == null ? v : d3.functor(v);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3042
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3043 return tip;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3044 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3045
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3046 // Public: Sets or gets the offset of the tip
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3047 //
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3048 // v - Array of [x, y] offset
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3049 //
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3050 // Returns offset or
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3051 tip.offset = function (v) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3052 if (!arguments.length) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3053 return offset;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3054 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3055 offset = v == null ? v : d3.functor(v);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3056
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3057 return tip;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3058 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3059
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3060 // Public: sets or gets the html value of the tooltip
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3061 //
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3062 // v - String value of the tip
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3063 //
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3064 // Returns html value or tip
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3065 tip.html = function (v) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3066 if (!arguments.length) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3067 return html;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3068 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3069 html = v == null ? v : d3.functor(v);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3070
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3071 return tip;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3072 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3073
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3074 function d3_tip_direction() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3075 return 'n';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3076 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3077 function d3_tip_offset() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3078 return [0, 0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3079 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3080 function d3_tip_html() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3081 return ' ';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3082 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3083
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3084 var direction_callbacks = d3.map({
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3085 n: direction_n,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3086 s: direction_s,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3087 e: direction_e,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3088 w: direction_w,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3089 nw: direction_nw,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3090 ne: direction_ne,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3091 sw: direction_sw,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3092 se: direction_se,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3093 south_custom: direction_south_custom
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3094 }),
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3095 directions = direction_callbacks.keys();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3096
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3097 function direction_south_custom() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3098 var bbox = getScreenBBox();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3099
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3100 return {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3101 top: bbox.s.y,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3102 left: bbox.s.x
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3103 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3104 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3105
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3106 function direction_n() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3107 var bbox = getScreenBBox();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3108 return {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3109 top: bbox.n.y - node.offsetHeight,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3110 left: bbox.n.x - node.offsetWidth / 2
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3111 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3112 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3113
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3114 function direction_s() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3115 var bbox = getScreenBBox();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3116 return {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3117 top: bbox.s.y,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3118 left: bbox.s.x - node.offsetWidth / 2
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3119 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3120 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3121
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3122 function direction_e() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3123 var bbox = getScreenBBox();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3124 return {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3125 top: bbox.e.y - node.offsetHeight / 2,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3126 left: bbox.e.x
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3127 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3128 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3129
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3130 function direction_w() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3131 var bbox = getScreenBBox();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3132 return {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3133 top: bbox.w.y - node.offsetHeight / 2,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3134 left: bbox.w.x - node.offsetWidth
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3135 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3136 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3137
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3138 function direction_nw() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3139 var bbox = getScreenBBox();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3140 return {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3141 top: bbox.nw.y - node.offsetHeight,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3142 left: bbox.nw.x - node.offsetWidth
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3143 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3144 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3145
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3146 function direction_ne() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3147 var bbox = getScreenBBox();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3148 return {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3149 top: bbox.ne.y - node.offsetHeight,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3150 left: bbox.ne.x
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3151 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3152 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3153
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3154 function direction_sw() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3155 var bbox = getScreenBBox();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3156 return {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3157 top: bbox.sw.y,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3158 left: bbox.sw.x - node.offsetWidth
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3159 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3160 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3161
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3162 function direction_se() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3163 var bbox = getScreenBBox();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3164 return {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3165 top: bbox.se.y,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3166 left: bbox.e.x
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3167 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3168 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3169
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3170 function initNode() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3171 var node = d3.select(document.createElement('div'));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3172 node.style({
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3173 position: 'absolute',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3174 opacity: 0,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3175 pointerEvents: 'none',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3176 boxSizing: 'border-box'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3177 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3178
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3179 return node.node();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3180 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3181
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3182 function getSVGNode(el) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3183 el = el.node();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3184 if (el.tagName.toLowerCase() == 'svg') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3185 return el;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3186 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3187
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3188 return el.ownerSVGElement;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3189 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3190
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3191 // Private - gets the screen coordinates of a shape
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3192 //
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3193 // Given a shape on the screen, will return an SVGPoint for the directions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3194 // n(north), s(south), e(east), w(west), ne(northeast), se(southeast), nw(northwest),
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3195 // sw(southwest).
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3196 //
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3197 // +-+-+
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3198 // \| \|
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3199 // + +
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3200 // \| \|
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3201 // +-+-+
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3202 //
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3203 // Returns an Object {n, s, e, w, nw, sw, ne, se}
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3204 function getScreenBBox() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3205 var targetel = target \|\| d3.event.target;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3206 var bbox = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3207 var matrix = targetel.getScreenCTM();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3208 var tbbox = targetel.getBBox();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3209 var width = tbbox.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3210 var height = tbbox.height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3211 var x = tbbox.x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3212 var y = tbbox.y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3213 var scrollTop = document.documentElement.scrollTop \|\| document.body.scrollTop;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3214 var scrollLeft = document.documentElement.scrollLeft \|\| document.body.scrollLeft;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3215
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3216 // Nick - prevents bugs with scrolling and zooming on the same object
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3217 matrix.a = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3218 matrix.d = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3219 // changing order of adding scrolling,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3220 // original ordering was causing problems with pre-translated or rotated
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3221 // elements.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3222 matrix.e = matrix.e + scrollLeft;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3223 matrix.f = matrix.f + scrollTop;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3224 point.x = x; //+ scrollLeft
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3225 point.y = y; //+ scrollTop
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3226
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3227 bbox.nw = point.matrixTransform(matrix);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3228 point.x = point.x + width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3229 bbox.ne = point.matrixTransform(matrix);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3230 point.y = point.y + height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3231 bbox.se = point.matrixTransform(matrix);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3232 point.x = point.x - width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3233 bbox.sw = point.matrixTransform(matrix);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3234 point.y = point.y - height / 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3235 bbox.w = point.matrixTransform(matrix);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3236 point.x = point.x + width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3237 bbox.e = point.matrixTransform(matrix);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3238 point.x = point.x - width / 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3239 point.y = point.y - height / 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3240 bbox.n = point.matrixTransform(matrix);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3241 point.y = point.y + height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3242 bbox.s = point.matrixTransform(matrix);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3243
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3244 return bbox;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3245 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3246
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3247 // only fade tips if you are still hovering on the current tip
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3248 function fade_tips(inst_selection) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3249
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3250 var is_hovering = d3.select(inst_selection).classed('hovering');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3251
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3252 if (is_hovering) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3253 d3.selectAll('.d3-tip').transition().duration(250).style('opacity', 0).style('display', 'none');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3254 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3255 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3256
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3257 function isFunction(functionToCheck) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3258 var getType = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3259 return functionToCheck && getType.toString.call(functionToCheck) === '[object Function]';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3260 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3261
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3262 return tip;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3263 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3264
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3265 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3266 /* 49 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3267 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3268
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3269 var make_row_labels = __webpack_require__(50);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3270
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3271 module.exports = function make_row_label_container(cgm, text_delay) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3272
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3273 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3274
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3275 var row_container;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3276
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3277 // row container holds all row text and row visualizations (triangles rects)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3278 ////////////////////////////////////////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3279 if (d3.select(params.viz.viz_svg + ' .row_container').empty()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3280 row_container = d3.select(params.viz.viz_svg).append('g').classed('row_container', true).attr('transform', 'translate(' + params.viz.norm_labels.margin.left + ',' + params.viz.clust.margin.top + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3281 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3282 row_container = d3.select(params.viz.viz_svg).select('.row_container').attr('transform', 'translate(' + params.viz.norm_labels.margin.left + ',' + params.viz.clust.margin.top + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3283 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3284
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3285 if (d3.select(params.root + ' .row_white_background').empty()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3286 row_container.append('rect').classed('row_white_background', true).classed('white_bars', true).attr('fill', params.viz.background_color).attr('width', params.viz.label_background.row).attr('height', 30 * params.viz.clust.dim.height + 'px');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3287 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3288
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3289 // add container to hold text row labels if not already there
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3290 if (d3.select(params.root + ' .row_label_container').empty()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3291 row_container.append('g').classed('row_label_container', true).attr('transform', 'translate(' + params.viz.norm_labels.width.row + ',0)').append('g').classed('row_label_zoom_container', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3292 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3293 row_container.select(params.root + ' .row_label_container').attr('transform', 'translate(' + params.viz.norm_labels.width.row + ',0)');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3294 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3295
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3296 // make row labels in the container
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3297 ///////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3298 if (params.viz.ds_level === -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3299 make_row_labels(cgm, 'all', text_delay);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3300 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3301 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3302
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3303 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3304 /* 50 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3305 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3306
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3307 var utils = __webpack_require__(2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3308 var add_row_click_hlight = __webpack_require__(51);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3309 var row_reorder = __webpack_require__(52);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3310 var make_row_tooltips = __webpack_require__(102);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3311
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3312 module.exports = function make_row_labels(cgm, row_names = 'all', text_delay = 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3313
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3314 // console.log('make_row_labels')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3315 // console.log(row_names)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3316
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3317 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3318 var row_nodes = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3319
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3320 if (row_names === 'all') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3321 row_nodes = params.network_data.row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3322 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3323 _.each(params.network_data.row_nodes, function (inst_row) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3324 if (_.contains(row_names, inst_row.name)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3325 row_nodes.push(inst_row);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3326 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3327 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3328 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3329
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3330 // make row labels in row_label_zoom_container, bind row_nodes data
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3331 var row_labels = d3.select(params.root + ' .row_label_zoom_container').selectAll('g').data(row_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3332 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3333 }).enter().append('g').classed('row_label_group', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3334
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3335 var row_nodes_names = params.network_data.row_nodes_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3336 row_labels.attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3337 // var inst_index = d.row_index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3338 var inst_index = _.indexOf(row_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3339 return 'translate(0,' + params.viz.y_scale(inst_index) + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3340 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3341
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3342 row_labels.on('dblclick', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3343
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3344 var data_attr = '__data__';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3345 var row_name = this[data_attr].name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3346
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3347 // if (params.sim_mat){
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3348 // row_reorder(cgm, this, row_name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3349
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3350 // d3.selectAll(params.root+' .col_label_text')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3351 // .filter(function(d){
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3352 // return d.name == row_name;}
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3353 // )[0][0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3354
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3355 // // this is causing buggyness may reenable
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3356 // // col_reorder -> two_translate_zoom -> show_visible_area -> make_row_labels -> col_reorder
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3357 // // col_reorder(cgm, col_selection, row_name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3358
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3359 // } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3360 // row_reorder(cgm, this, row_name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3361 // }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3362
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3363 row_reorder(cgm, this, row_name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3364
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3365 if (params.tile_click_hlight) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3366 add_row_click_hlight(this, d.ini);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3367 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3368 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3369
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3370 make_row_tooltips(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3371
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3372 // append rectangle behind text
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3373 row_labels.insert('rect').style('opacity', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3374
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3375 // append row label text
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3376 row_labels.append('text').attr('y', params.viz.rect_height * 0.5 + params.labels.default_fs_row * 0.35).attr('text-anchor', 'end').style('font-size', params.labels.default_fs_row + 'px').text(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3377 return utils.normal_name(d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3378 }).attr('pointer-events', 'none').style('opacity', 0).style('cursor', 'default').transition().delay(text_delay).duration(text_delay).style('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3379
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3380 // change the size of the highlighting rects
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3381 row_labels.each(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3382 var bbox = d3.select(this).select('text')[0][0].getBBox();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3383 d3.select(this).select('rect').attr('x', bbox.x).attr('y', 0).attr('width', bbox.width).attr('height', params.viz.y_scale.rangeBand()).style('fill', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3384 var inst_hl = 'yellow';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3385 return inst_hl;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3386 }).style('opacity', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3387 var inst_opacity = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3388 // highlight target genes
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3389 if (d.target === 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3390 inst_opacity = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3391 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3392 return inst_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3393 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3394 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3395
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3396 // almost-deprecated row value bars
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3397 ///////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3398 if (utils.has(params.network_data.row_nodes[0], 'value')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3399
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3400 row_labels.append('rect').classed('row_bars', true).attr('width', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3401 var inst_value = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3402 inst_value = params.labels.bar_scale_row(Math.abs(d.value));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3403 return inst_value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3404 }).attr('x', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3405 var inst_value = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3406 inst_value = -params.labels.bar_scale_row(Math.abs(d.value));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3407 return inst_value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3408 }).attr('height', params.viz.y_scale.rangeBand()).attr('fill', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3409 return d.value > 0 ? params.matrix.bar_colors[0] : params.matrix.bar_colors[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3410 }).attr('opacity', 0.4);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3411 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3412 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3413
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3414 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3415 /* 51 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3416 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3417
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3418 module.exports = function (params, clicked_row, id_clicked_row) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3419 if (id_clicked_row != params.click_hlight_row) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3420
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3421 var rel_width_hlight = 6;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3422 var opacity_hlight = 0.85;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3423 var hlight_height = rel_width_hlight * params.viz.border_width.x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3424
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3425 d3.selectAll(params.root + ' .click_hlight').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3426
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3427 // // highlight selected row
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3428 // d3.selectAll(params.root+' .row_label_group')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3429 // .select('rect')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3430 // d3.select(this)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3431 // .select('rect')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3432 // .style('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3433
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3434 d3.select(clicked_row).append('rect').classed('click_hlight', true).classed('row_top_hlight', true).attr('width', params.viz.svg_dim.width).attr('height', hlight_height).attr('fill', params.matrix.hlight_color).attr('opacity', opacity_hlight);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3435
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3436 d3.select(clicked_row).append('rect').classed('click_hlight', true).classed('row_bottom_hlight', true).attr('width', params.viz.svg_dim.width).attr('height', hlight_height).attr('fill', params.matrix.hlight_color).attr('opacity', opacity_hlight).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3437 var tmp_translate_y = params.viz.y_scale.rangeBand() - hlight_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3438 return 'translate(0,' + tmp_translate_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3439 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3440 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3441 d3.selectAll(params.root + ' .click_hlight').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3442 params.click_hlight_row = -666;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3443 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3444 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3445
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3446 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3447 /* 52 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3448 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3449
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3450 var reposition_tile_highlight = __webpack_require__(53);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3451 var toggle_dendro_view = __webpack_require__(54);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3452 var ini_zoom_info = __webpack_require__(36);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3453 var get_previous_zoom = __webpack_require__(101);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3454 var calc_downsampled_levels = __webpack_require__(27);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3455
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3456 module.exports = function row_reorder(cgm, row_selection, inst_row) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3457
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3458 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3459 var prev_zoom = get_previous_zoom(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3460
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3461 if (prev_zoom.zoom_y === 1 && prev_zoom.zoom_x === 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3462
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3463 params.viz.inst_order.row = 'custom';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3464 toggle_dendro_view(cgm, 'col');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3465
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3466 d3.selectAll(params.root + ' .toggle_col_order .btn').classed('active', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3467
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3468 params.viz.run_trans = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3469
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3470 var mat = $.extend(true, {}, params.matrix.matrix);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3471 var row_nodes = params.network_data.row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3472 var col_nodes = params.network_data.col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3473
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3474 // find the index of the row
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3475 var tmp_arr = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3476 row_nodes.forEach(function (node) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3477 tmp_arr.push(node.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3478 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3479
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3480 // find index
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3481 inst_row = _.indexOf(tmp_arr, inst_row);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3482
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3483 // gather the values of the input genes
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3484 tmp_arr = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3485 col_nodes.forEach(function (node, index) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3486 tmp_arr.push(mat[inst_row].row_data[index].value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3487 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3488
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3489 // sort the rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3490 var tmp_sort = d3.range(tmp_arr.length).sort(function (a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3491 return tmp_arr[b] - tmp_arr[a];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3492 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3493
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3494 // resort cols (cols are reorderd by double clicking a row)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3495 params.viz.x_scale.domain(tmp_sort);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3496
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3497 // save to custom col order
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3498 params.matrix.orders.custom_row = tmp_sort;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3499
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3500 // reorder matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3501 ////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3502 var t;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3503 if (params.network_data.links.length > params.matrix.def_large_matrix) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3504 t = d3.select(params.root + ' .viz_svg');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3505 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3506 t = d3.select(params.root + ' .viz_svg').transition().duration(2500);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3507 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3508
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3509 var col_nodes_names = params.network_data.col_nodes_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3510
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3511 // Move Col Labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3512 t.select('.col_zoom_container').selectAll('.col_label_text').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3513 var inst_index = _.indexOf(col_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3514 return 'translate(' + params.viz.x_scale(inst_index) + ')rotate(-90)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3515 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3516
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3517 // reorder col_class groups
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3518 t.selectAll('.col_cat_group').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3519 var inst_index = _.indexOf(col_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3520 return 'translate(' + params.viz.x_scale(inst_index) + ',0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3521 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3522
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3523 // reorder tiles in matrix (do not change row order)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3524 if (params.viz.ds_level === -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3525 t.selectAll('.tile').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3526 return 'translate(' + params.viz.x_scale(d.pos_x) + ',0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3527 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3528
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3529 t.selectAll('.tile_up').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3530 return 'translate(' + params.viz.x_scale(d.pos_x) + ',0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3531 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3532
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3533 t.selectAll('.tile_dn').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3534 return 'translate(' + params.viz.x_scale(d.pos_x) + ',0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3535 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3536 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3537
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3538 // highlight selected row
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3539 ///////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3540 // unhilight and unbold all columns (already unbolded earlier)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3541 d3.selectAll(params.root + ' .row_label_group').select('rect').style('opacity', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3542 // highlight column name
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3543 d3.select(row_selection).select('rect').style('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3544
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3545 reposition_tile_highlight(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3546
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3547 // redefine x and y positions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3548 params.network_data.links.forEach(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3549 d.x = params.viz.x_scale(d.target);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3550 d.y = params.viz.y_scale(d.source);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3551 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3552
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3553 params.zoom_info = ini_zoom_info();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3554
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3555 setTimeout(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3556 params.viz.run_trans = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3557 }, 2500);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3558
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3559 // calculate downsmapling if necessary
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3560 if (params.viz.ds_num_levels > 0 && params.viz.ds_level >= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3561
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3562 calc_downsampled_levels(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3563
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3564 // var zooming_stopped = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3565 // var zooming_out = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3566 // var make_all_rows = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3567 // // show_visible_area is also run with two_translate_zoom, but at that point
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3568 // // the parameters were not updated and two_translate_zoom if only run
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3569 // // if needed to reset zoom
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3570 // show_visible_area(cgm, zooming_stopped, zooming_out, make_all_rows);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3571 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3572 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3573 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3574
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3575 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3576 /* 53 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3577 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3578
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3579 module.exports = function (params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3580
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3581 // resize click hlight
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3582 var rel_width_hlight = 6;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3583 // var opacity_hlight = 0.85;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3584
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3585 var hlight_width = rel_width_hlight * params.viz.border_width.x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3586 var hlight_height = rel_width_hlight * params.viz.border_width.y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3587
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3588 // reposition tile highlight
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3589 ////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3590 // top highlight
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3591 d3.select(params.root + ' .top_hlight').attr('width', params.viz.x_scale.rangeBand()).attr('height', hlight_height).transition().duration(2500).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3592 return 'translate(' + params.viz.x_scale(params.matrix.click_hlight_x) + ',0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3593 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3594
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3595 // left highlight
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3596 d3.select(params.root + ' .left_hlight').attr('width', hlight_width).attr('height', params.viz.y_scale.rangeBand() - hlight_height * 0.99).transition().duration(2500).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3597 return 'translate(' + params.viz.x_scale(params.matrix.click_hlight_x) + ',' + hlight_height * 0.99 + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3598 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3599
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3600 // right highlight
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3601 d3.select(params.root + ' .right_hlight').attr('width', hlight_width).attr('height', params.viz.y_scale.rangeBand() - hlight_height * 0.99).transition().duration(2500).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3602 var tmp_translate = params.viz.x_scale(params.matrix.click_hlight_x) + params.viz.x_scale.rangeBand() - hlight_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3603 return 'translate(' + tmp_translate + ',' + hlight_height * 0.99 + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3604 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3605
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3606 // bottom highlight
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3607 d3.select(params.root + ' .bottom_hlight').attr('width', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3608 return params.viz.x_scale.rangeBand() - 1.98 * hlight_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3609 }).attr('height', hlight_height).transition().duration(2500).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3610 var tmp_translate_x = params.viz.x_scale(params.matrix.click_hlight_x) + hlight_width * 0.99;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3611 var tmp_translate_y = params.viz.y_scale.rangeBand() - hlight_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3612 return 'translate(' + tmp_translate_x + ',' + tmp_translate_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3613 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3614 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3615
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3616 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3617 /* 54 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3618 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3619
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3620 var make_dendro_triangles = __webpack_require__(55);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3621
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3622 module.exports = function toggle_dendro_view(cgm, inst_rc, wait_time = 1500) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3623
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3624 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3625
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3626 // row and col are reversed
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3627 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3628 if (params.viz.inst_order.col === 'clust') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3629 // the last true tells the viz that I'm chaning group size and not to
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3630 // delay the change in dendro
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3631 setTimeout(make_dendro_triangles, wait_time, cgm, 'row', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3632 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3633 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3634
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3635 if (inst_rc === 'col') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3636 if (params.viz.inst_order.row === 'clust') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3637 setTimeout(make_dendro_triangles, wait_time, cgm, 'col', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3638 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3639 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3640
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3641 if (params.viz.inst_order.row != 'clust' && params.viz.dendro_filter.col === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3642 d3.selectAll(params.root + ' .col_dendro_group').style('opacity', 0).on('mouseover', null).on('mouseout', null);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3643
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3644 d3.select(params.root + ' .col_slider_group').style('opacity', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3645
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3646 // toggle crop buttons
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3647 d3.selectAll(params.root + ' .col_dendro_crop_buttons').style('opacity', 0).on('mouseover', null).on('mouseout', null);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3648 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3649
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3650 if (params.viz.inst_order.col != 'clust' && params.viz.dendro_filter.row === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3651
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3652 d3.selectAll(params.root + ' .row_dendro_group').style('opacity', 0).on('mouseover', null).on('mouseout', null).on('click', null);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3653
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3654 d3.select(params.root + ' .row_slider_group').style('opacity', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3655
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3656 // toggle crop buttons
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3657 d3.selectAll(params.root + ' .row_dendro_crop_buttons').style('opacity', 0).on('mouseover', null).on('mouseout', null);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3658 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3659 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3660
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3661 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3662 /* 55 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3663 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3664
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3665 var calc_row_dendro_triangles = __webpack_require__(56);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3666 var calc_col_dendro_triangles = __webpack_require__(57);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3667 var dendro_group_highlight = __webpack_require__(58);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3668 var d3_tip_custom = __webpack_require__(48);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3669 var make_dendro_crop_buttons = __webpack_require__(60);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3670 var make_cat_breakdown_graph = __webpack_require__(63);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3671
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3672 module.exports = function make_dendro_triangles(cgm, inst_rc, is_change_group = false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3673
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3674 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3675
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3676 // in case sim_mat
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3677 if (inst_rc === 'both') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3678 inst_rc = 'row';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3679 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3680
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3681 var other_rc;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3682 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3683 other_rc = 'col';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3684 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3685 other_rc = 'row';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3686 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3687
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3688 // orders are switched!
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3689 if (params.viz.inst_order[other_rc] === 'clust') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3690 d3.select(params.root + ' .' + inst_rc + '_slider_group').style('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3691 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3692
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3693 var dendro_info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3694
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3695 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3696 dendro_info = calc_row_dendro_triangles(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3697 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3698 dendro_info = calc_col_dendro_triangles(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3699 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3700
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3701 if (d3.select(cgm.params.root + ' .' + inst_rc + '_dendro_crop_buttons').empty() === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3702 make_dendro_crop_buttons(cgm, inst_rc);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3703 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3704
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3705 // constant dendrogram opacity
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3706 var inst_dendro_opacity = params.viz.dendro_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3707
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3708 function still_hovering(inst_selection, inst_data, i) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3709
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3710 if (d3.select(inst_selection).classed('hovering')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3711
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3712 // define where graph should be built
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3713 var inst_selector = params.viz.root_tips + '_' + inst_rc + '_dendro_tip';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3714
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3715 // prevent mouseover from making multiple graphs
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3716 if (d3.select(inst_selector + ' .cat_graph').empty()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3717
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3718 if (params.viz.cat_info[inst_rc] !== null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3719 make_cat_breakdown_graph(params, inst_rc, inst_data, dendro_info[i], inst_selector, true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3720 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3721 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3722
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3723 d3.selectAll(params.viz.root_tips + '_' + inst_rc + '_dendro_tip').style('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3724 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3725 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3726
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3727 var wait_before_tooltip = 500;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3728
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3729 // remove any old dendro tooltips from this visualization
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3730 d3.selectAll(cgm.params.viz.root_tips + '_' + inst_rc + '_dendro_tip').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3731
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3732 // run transition rules
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3733 var run_transition;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3734 if (d3.selectAll(params.root + ' .' + inst_rc + '_dendro_group').empty()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3735 run_transition = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3736 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3737 run_transition = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3738 d3.selectAll(params.root + ' .' + inst_rc + '_dendro_group').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3739 // d3.selectAll(params.root+' .dendro_tip').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3740 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3741
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3742 // d3-tooltip
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3743 var tmp_y_offset = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3744 var tmp_x_offset = -5;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3745 var dendro_tip = d3_tip_custom().attr('class', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3746 // add root element to class
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3747 var root_tip_selector = params.viz.root_tips.replace('.', '');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3748 var class_string = root_tip_selector + ' d3-tip ' + root_tip_selector + '_' + inst_rc + '_dendro_tip';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3749
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3750 return class_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3751 }).direction('nw').offset([tmp_y_offset, tmp_x_offset]).style('display', 'none').style('opacity', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3752
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3753 dendro_tip.html(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3754 var full_string = '<div class="cluster_info_container"></div>Click for cluster information <br>' + 'and additional options.';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3755 return full_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3756 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3757
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3758 if (is_change_group) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3759 run_transition = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3760 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3761
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3762 var dendro_traps = d3.select(params.root + ' .' + inst_rc + '_dendro_container').selectAll('path').data(dendro_info, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3763 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3764 }).enter().append('path').style('opacity', 0).attr('class', inst_rc + '_dendro_group').style('fill', 'black');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3765
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3766 // draw triangles (shown as trapezoids)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3767 //////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3768 var start_x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3769 var start_y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3770 var mid_x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3771 var mid_y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3772 var final_x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3773 var final_y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3774
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3775 // row triangles
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3776 dendro_traps.attr('d', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3777
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3778 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3779 // row triangles
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3780 start_x = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3781 start_y = d.pos_top;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3782 mid_x = 30;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3783 mid_y = d.pos_mid;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3784 final_x = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3785 final_y = d.pos_bot;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3786 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3787 // column triangles
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3788 start_x = d.pos_top;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3789 start_y = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3790 mid_x = d.pos_mid;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3791 mid_y = 30;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3792 final_x = d.pos_bot;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3793 final_y = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3794 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3795
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3796 var output_string = 'M' + start_x + ',' + start_y + ', L' + mid_x + ', ' + mid_y + ', L' + final_x + ',' + final_y + ' Z';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3797 return output_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3798 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3799
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3800 dendro_traps.on('mouseover', function (d, i) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3801
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3802 // if (params.sim_mat){
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3803 // inst_rc = 'both';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3804 // }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3805
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3806 // run instantly on mouseover
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3807 d3.select(this).classed('hovering', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3808
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3809 if (cgm.params.dendro_callback != null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3810 cgm.params.dendro_callback(this);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3811 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3812
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3813 // display tip
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3814 // this is needed for it to show in the right place and the opacity
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3815 // will be toggled to delay the tooltip for the user
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3816 d3.select(params.viz.root_tips + '_' + inst_rc + '_dendro_tip').style('display', 'block');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3817
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3818 dendro_group_highlight(params, this, d, inst_rc);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3819
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3820 // show the tip (make sure it is displaying before it is shown)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3821 dendro_tip.show(d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3822
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3823 // set opacity to zero
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3824 d3.select(params.viz.root_tips + '_' + inst_rc + '_dendro_tip').style('opacity', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3825
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3826 // check if still hovering
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3827 setTimeout(still_hovering, wait_before_tooltip, this, d, i);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3828 }).on('mouseout', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3829 if (params.viz.inst_order[other_rc] === 'clust') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3830 d3.select(this).style('opacity', inst_dendro_opacity);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3831 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3832
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3833 d3.selectAll(params.root + ' .dendro_shadow').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3834
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3835 d3.select(this).classed('hovering', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3836 dendro_tip.hide(this);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3837 }).on('click', function (d, i) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3838
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3839 $(params.root + ' .dendro_info').modal('toggle');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3840
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3841 var group_string = d.all_names.join(', ');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3842 d3.select(params.root + ' .dendro_info input').attr('value', group_string);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3843
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3844 var inst_selector = params.root + ' .dendro_info';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3845
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3846 // remove old graphs (modals are not within params.root)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3847 d3.selectAll('.dendro_info .cluster_info_container .cat_graph').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3848
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3849 if (params.viz.cat_info[inst_rc] !== null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3850 make_cat_breakdown_graph(params, inst_rc, d, dendro_info[i], inst_selector);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3851 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3852
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3853 if (cgm.params.dendro_click_callback != null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3854 cgm.params.dendro_click_callback(this);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3855 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3856 }).call(dendro_tip);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3857
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3858 var triangle_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3859 if (params.viz.inst_order[other_rc] === 'clust') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3860 triangle_opacity = inst_dendro_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3861 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3862 triangle_opacity = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3863 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3864
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3865 if (run_transition) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3866
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3867 d3.select(params.root + ' .' + inst_rc + '_dendro_container').selectAll('path').transition().delay(1000).duration(1000).style('opacity', triangle_opacity);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3868 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3869
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3870 d3.select(params.root + ' .' + inst_rc + '_dendro_container').selectAll('path').style('opacity', triangle_opacity);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3871 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3872 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3873
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3874 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3875 /* 56 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3876 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3877
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3878 module.exports = function calc_row_dendro_triangles(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3879
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3880 var triangle_info = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3881 var inst_level = params.group_level.row;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3882 var row_nodes = params.network_data.row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3883 var row_nodes_names = params.network_data.row_nodes_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3884
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3885 _.each(row_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3886
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3887 // console.log('row_node '+d.name)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3888
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3889 var tmp_group = d.group[inst_level];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3890 var inst_index = _.indexOf(row_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3891 var inst_top = params.viz.y_scale(inst_index);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3892 var inst_bot = inst_top + params.viz.y_scale.rangeBand();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3893
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3894 if (_.has(triangle_info, tmp_group) === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3895 triangle_info[tmp_group] = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3896 triangle_info[tmp_group].name_top = d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3897 triangle_info[tmp_group].name_bot = d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3898 triangle_info[tmp_group].pos_top = inst_top;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3899 triangle_info[tmp_group].pos_bot = inst_bot;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3900 triangle_info[tmp_group].pos_mid = (inst_top + inst_bot) / 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3901 triangle_info[tmp_group].name = tmp_group;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3902 triangle_info[tmp_group].all_names = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3903 triangle_info[tmp_group].inst_rc = 'row';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3904 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3905
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3906 triangle_info[tmp_group].all_names.push(d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3907
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3908 if (inst_top < triangle_info[tmp_group].pos_top) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3909 triangle_info[tmp_group].name_top = d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3910 triangle_info[tmp_group].pos_top = inst_top;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3911 triangle_info[tmp_group].pos_mid = (inst_top + triangle_info[tmp_group].pos_bot) / 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3912 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3913
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3914 if (inst_bot > triangle_info[tmp_group].pos_bot) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3915 triangle_info[tmp_group].name_bot = d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3916 triangle_info[tmp_group].pos_bot = inst_bot;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3917 triangle_info[tmp_group].pos_mid = (triangle_info[tmp_group].pos_top + inst_bot) / 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3918 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3919 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3920
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3921 var group_info = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3922
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3923 _.each(triangle_info, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3924 group_info.push(d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3925 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3926
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3927 return group_info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3928 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3929
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3930 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3931 /* 57 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3932 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3933
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3934 module.exports = function calc_col_dendro_triangles(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3935
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3936 var triangle_info = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3937 var inst_level = params.group_level.col;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3938 var col_nodes = params.network_data.col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3939 var col_nodes_names = params.network_data.col_nodes_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3940
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3941 _.each(col_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3942
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3943 var tmp_group = d.group[inst_level];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3944 var inst_index = _.indexOf(col_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3945 var inst_top = params.viz.x_scale(inst_index);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3946 var inst_bot = inst_top + params.viz.x_scale.rangeBand();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3947
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3948 if (_.has(triangle_info, tmp_group) === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3949 triangle_info[tmp_group] = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3950 triangle_info[tmp_group].name_top = d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3951 triangle_info[tmp_group].name_bot = d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3952 triangle_info[tmp_group].pos_top = inst_top;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3953 triangle_info[tmp_group].pos_bot = inst_bot;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3954 triangle_info[tmp_group].pos_mid = (inst_top + inst_bot) / 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3955 triangle_info[tmp_group].name = tmp_group;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3956 triangle_info[tmp_group].all_names = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3957 triangle_info[tmp_group].inst_rc = 'col';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3958 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3959
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3960 triangle_info[tmp_group].all_names.push(d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3961
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3962 if (inst_top < triangle_info[tmp_group].pos_top) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3963 triangle_info[tmp_group].name_top = d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3964 triangle_info[tmp_group].pos_top = inst_top;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3965 triangle_info[tmp_group].pos_mid = (inst_top + triangle_info[tmp_group].pos_bot) / 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3966 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3967
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3968 if (inst_bot > triangle_info[tmp_group].pos_bot) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3969 triangle_info[tmp_group].name_bot = d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3970 triangle_info[tmp_group].pos_bot = inst_bot;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3971 triangle_info[tmp_group].pos_mid = (triangle_info[tmp_group].pos_top + inst_bot) / 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3972 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3973 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3974
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3975 var group_info = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3976
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3977 _.each(triangle_info, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3978 group_info.push(d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3979 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3980
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3981 return group_info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3982 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3983
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3984 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3985 /* 58 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3986 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3987
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3988 var dendro_shade_bars = __webpack_require__(59);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3989
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3990 module.exports = function dendro_group_highlight(params, inst_selection, inst_data, inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3991
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3992 // only make shadows if there is more than one crop button
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3993 if (d3.selectAll(params.root + ' .' + inst_rc + '_dendro_crop_buttons')[0].length > 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3994 setTimeout(still_hovering, 500);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3995 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3996 d3.selectAll(params.root + ' .dendro_shadow').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3997 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3998
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	3999 function still_hovering() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4000
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4001 // check that user is still hovering over dendrogram group
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4002 if (d3.select(inst_selection).classed('hovering')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4003
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4004 // check that user is not using dendrogram slider
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4005 if (params.is_slider_drag === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4006
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4007 d3.select(inst_selection).style('opacity', 0.7);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4008
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4009 if (d3.select(params.viz.viz_svg).classed('running_update') === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4010 make_shadow_bars();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4011 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4012 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4013 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4014 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4015
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4016 function make_shadow_bars() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4017
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4018 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4019
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4020 // row and col labling are reversed
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4021 if (params.viz.inst_order.col === 'clust') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4022 dendro_shade_bars(params, inst_selection, inst_rc, inst_data);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4023 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4024 } else if (inst_rc === 'col') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4025
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4026 // row and col labeling are reversed
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4027 if (params.viz.inst_order.row === 'clust') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4028 dendro_shade_bars(params, inst_selection, inst_rc, inst_data);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4029 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4030 } else if (inst_rc === 'both') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4031
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4032 if (params.viz.inst_order.col === 'clust') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4033 dendro_shade_bars(params, inst_selection, 'row', inst_data);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4034 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4035 if (params.viz.inst_order.row === 'clust') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4036 dendro_shade_bars(params, inst_selection, 'col', inst_data);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4037 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4038 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4039 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4040 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4041
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4042 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4043 /* 59 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4044 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4045
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4046 module.exports = function dendro_shade_bars(params, inst_selection, inst_rc, inst_data) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4047
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4048 var inst_opacity = 0.2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4049 var bot_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4050
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4051 d3.selectAll(params.root + ' .dendro_shadow').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4052
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4053 if (inst_rc == 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4054
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4055 // top shade
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4056 d3.select(params.root + ' .clust_group').append('rect').attr('width', params.viz.clust.dim.width + 'px').attr('height', inst_data.pos_top + 'px').attr('fill', 'black').classed('dendro_shadow', true).attr('opacity', inst_opacity);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4057
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4058 bot_height = params.viz.clust.dim.height - inst_data.pos_bot;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4059 // bottom shade
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4060 d3.select(params.root + ' .clust_group').append('rect').attr('width', params.viz.clust.dim.width + 'px').attr('height', bot_height + 'px').attr('transform', 'translate(0,' + inst_data.pos_bot + ')').attr('fill', 'black').classed('dendro_shadow', true).attr('opacity', inst_opacity);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4061 } else if (inst_rc === 'col') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4062
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4063 // top shade
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4064 d3.select(params.root + ' .clust_group').append('rect').attr('width', inst_data.pos_top + 'px').attr('height', params.viz.clust.dim.height + 'px').attr('fill', 'black').classed('dendro_shadow', true).attr('opacity', inst_opacity);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4065
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4066 // bottom shade
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4067 bot_height = params.viz.clust.dim.width - inst_data.pos_bot;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4068 d3.select(params.root + ' .clust_group').append('rect').attr('width', bot_height + 'px').attr('height', params.viz.clust.dim.height + 'px').attr('transform', 'translate(' + inst_data.pos_bot + ',0)').attr('fill', 'black').classed('dendro_shadow', true).attr('opacity', inst_opacity);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4069 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4070 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4071
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4072 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4073 /* 60 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4074 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4075
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4076 var calc_row_dendro_triangles = __webpack_require__(56);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4077 var calc_col_dendro_triangles = __webpack_require__(57);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4078 var d3_tip_custom = __webpack_require__(48);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4079 var dendro_group_highlight = __webpack_require__(58);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4080 var run_dendro_filter = __webpack_require__(61);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4081 var zoom_crop_triangles = __webpack_require__(62);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4082
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4083 module.exports = function make_dendro_crop_buttons(cgm, inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4084
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4085 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4086
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4087 var button_opacity = params.viz.dendro_opacity * 0.60;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4088
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4089 // information needed to make dendro
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4090 var dendro_info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4091 var other_rc;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4092 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4093 dendro_info = calc_row_dendro_triangles(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4094 other_rc = 'col';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4095 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4096 dendro_info = calc_col_dendro_triangles(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4097 other_rc = 'row';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4098 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4099
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4100 // d3-tooltip
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4101 var tmp_y_offset = 5;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4102 var tmp_x_offset = -5;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4103 var dendro_crop_tip = d3_tip_custom().attr('class', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4104 var root_tip_selector = params.viz.root_tips.replace('.', '');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4105 var class_string = root_tip_selector + ' d3-tip ' + root_tip_selector + '_' + inst_rc + '_dendro_crop_tip';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4106
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4107 return class_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4108 }).direction('nw').style('display', 'none').offset([tmp_y_offset, tmp_x_offset]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4109
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4110 var wait_before_tooltip = 500;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4111
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4112 d3.selectAll(params.viz.root_tips + '_' + inst_rc + '_dendro_crop_tip').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4113 d3.selectAll(params.root + ' .' + inst_rc + '_dendro_crop_buttons').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4114
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4115 var icons;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4116 // position triangles
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4117 var start_x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4118 var start_y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4119 var mid_x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4120 var mid_y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4121 var final_x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4122 var final_y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4123
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4124 // need to improve to account for zooming
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4125 var min_tri_height = 45;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4126 var scale_down_tri = 0.25;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4127 var tri_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4128 var tri_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4129 var tri_dim;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4130
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4131 // make crop buttons or undo buttons
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4132 var button_class = inst_rc + '_dendro_crop_buttons';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4133 if (d3.select(cgm.params.root + ' .' + inst_rc + '_dendro_icons_group').classed('ran_filter') === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4134
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4135 // Crop Triangle
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4136 //////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4137 icons = d3.select(params.root + ' .' + inst_rc + '_dendro_icons_group').selectAll('path').data(dendro_info, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4138 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4139 }).enter().append('path').classed(button_class, true).attr('d', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4140
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4141 // redefine
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4142 tri_height = 10;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4143 tri_width = 10;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4144
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4145 var tmp_height = d.pos_bot - d.pos_top;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4146
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4147 // Row Dendrogram Crop Triangle
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4148 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4149
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4150 if (tmp_height < min_tri_height) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4151 tri_height = tmp_height * scale_down_tri;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4152 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4153
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4154 // pointing left
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4155 start_x = tri_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4156 start_y = -tri_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4157 mid_x = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4158 mid_y = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4159 final_x = tri_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4160 final_y = tri_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4161
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4162 tri_dim = tri_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4163
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4164 // Column Dendrogram Crop Triangle
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4165 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4166
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4167 if (tmp_height < min_tri_height) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4168 tri_width = tmp_height * scale_down_tri;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4169 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4170
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4171 // pointing upward
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4172 start_x = -tri_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4173 start_y = tri_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4174 mid_x = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4175 mid_y = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4176 final_x = tri_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4177 final_y = tri_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4178
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4179 tri_dim = tri_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4180 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4181
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4182 // save triangle height
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4183 // d3.select(this)[0][0].__data__.tri_dim = tri_dim;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4184 var data_key = '__data__';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4185 d3.select(this)[0][0][data_key].tri_dim = tri_dim;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4186
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4187 var output_string = 'M' + start_x + ',' + start_y + ', L' + mid_x + ', ' + mid_y + ', L' + final_x + ',' + final_y + ' Z';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4188
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4189 return output_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4190 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4191
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4192 dendro_crop_tip.html(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4193 var full_string = 'Click to crop cluster';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4194 return full_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4195 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4196 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4197
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4198 // Undo Triangle
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4199 //////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4200 icons = d3.select(params.root + ' .' + inst_rc + '_dendro_icons_group').selectAll('path').data(dendro_info, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4201 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4202 }).enter().append('path').classed(button_class, true).attr('d', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4203
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4204 // redefine
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4205 tri_height = 10;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4206 tri_width = 12;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4207
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4208 var tmp_height = d.pos_bot - d.pos_top;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4209
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4210 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4211
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4212 if (tmp_height < min_tri_height) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4213 tri_height = tmp_height * scale_down_tri;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4214 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4215
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4216 // pointing right
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4217 start_x = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4218 start_y = -tri_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4219 mid_x = tri_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4220 mid_y = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4221 final_x = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4222 final_y = tri_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4223 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4224
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4225 if (tmp_height < min_tri_height) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4226 tri_width = tmp_height * scale_down_tri;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4227 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4228
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4229 // pointing downward
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4230 start_x = -tri_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4231 start_y = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4232 mid_x = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4233 mid_y = tri_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4234 final_x = tri_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4235 final_y = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4236 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4237
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4238 // save triangle height
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4239 var data_key = '__data__';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4240 d3.select(this)[0][0][data_key].tri_dim = 10;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4241
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4242 var output_string = 'M' + start_x + ',' + start_y + ', L' + mid_x + ', ' + mid_y + ', L' + final_x + ',' + final_y + ' Z';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4243
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4244 return output_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4245 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4246
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4247 dendro_crop_tip.html(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4248 var full_string = 'Click to undo crop';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4249 return full_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4250 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4251 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4252
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4253 icons.style('cursor', 'pointer').style('opacity', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4254
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4255 var inst_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4256
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4257 // if (d3.select(this).classed('hide_crop')){
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4258 // inst_opacity = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4259 // } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4260 // inst_opacity = button_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4261 // }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4262
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4263 inst_opacity = button_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4264 return inst_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4265 }).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4266 var inst_translate;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4267
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4268 var inst_x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4269 var inst_y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4270
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4271 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4272 inst_x = params.viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4273 inst_y = d.pos_mid;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4274 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4275 inst_x = d.pos_mid;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4276 inst_y = params.viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4277 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4278
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4279 inst_translate = 'translate(' + inst_x + ',' + inst_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4280 return inst_translate;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4281 }).on('mouseover', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4282
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4283 d3.select(this).classed('hovering', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4284
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4285 dendro_crop_tip.show(d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4286
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4287 dendro_group_highlight(params, this, d, inst_rc);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4288
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4289 // display with zero opacity
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4290 d3.selectAll(params.viz.root_tips + '_' + inst_rc + '_dendro_crop_tip').style('opacity', 0).style('display', 'block');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4291
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4292 // check if still hovering
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4293 setTimeout(still_hovering, wait_before_tooltip, this);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4294 }).on('mouseout', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4295
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4296 d3.select(this).classed('hovering', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4297
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4298 d3.selectAll(params.root + ' .dendro_shadow').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4299
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4300 d3.select(this).style('opacity', button_opacity);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4301
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4302 dendro_crop_tip.hide(this);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4303 }).on('click', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4304
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4305 // give user visual cue
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4306 d3.select(this).style('opacity', 0.9).transition().duration(1000).style('opacity', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4307
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4308 // remove dendro shadows when clicked
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4309 d3.selectAll(params.root + ' .dendro_shadow').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4310
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4311 /* filter using dendrogram */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4312 if (cgm.params.dendro_filter.row === false && cgm.params.dendro_filter.col === false && cgm.params.cat_filter.row === false && cgm.params.cat_filter.col === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4313
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4314 // Run Filtering
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4315 ///////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4316
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4317 // use class as 'global' variable
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4318 d3.select(cgm.params.root + ' .' + inst_rc + '_dendro_icons_group').attr('transform', 'translate(0,0), scale(1,1)').classed('ran_filter', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4319
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4320 d3.select(cgm.params.root + ' .' + other_rc + '_dendro_icons_group').attr('transform', 'translate(0,0), scale(1,1)');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4321
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4322 // do not display dendrogram slider if filtering has been run
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4323 d3.select(cgm.params.root + ' .' + inst_rc + '_slider_group').style('display', 'none');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4324
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4325 // do not display other crop buttons since they are inactive
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4326 d3.select(cgm.params.root + ' .' + other_rc + '_dendro_icons_container').style('display', 'none');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4327
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4328 // do not display brush-crop button if performing dendro crop
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4329 d3.select(cgm.params.root + ' .crop_button').style('opacity', 0.2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4330 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4331
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4332 // Undo Filtering
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4333 ///////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4334 // use class as 'global' variable
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4335 d3.select(cgm.params.root + ' .' + inst_rc + '_dendro_icons_group').attr('transform', 'translate(0,0), scale(1,1)').classed('ran_filter', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4336
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4337 d3.select(cgm.params.root + ' .' + other_rc + '_dendro_icons_group').attr('transform', 'translate(0,0), scale(1,1)');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4338
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4339 if (params.viz.inst_order[other_rc] === 'clust') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4340 // display slider when cropping has not been done
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4341 d3.select(cgm.params.root + ' .' + inst_rc + '_slider_group').style('display', 'block');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4342 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4343
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4344 // display other crop buttons when cropping has not been done
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4345 d3.select(cgm.params.root + ' .' + other_rc + '_dendro_icons_container').style('display', 'block');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4346
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4347 // display brush-crop button if not performing dendro crop
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4348 d3.select(cgm.params.root + ' .crop_button').style('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4349 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4350
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4351 run_dendro_filter(cgm, d, inst_rc);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4352 }).call(dendro_crop_tip);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4353
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4354 // ordering has been reversed
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4355 if (params.viz.inst_order[other_rc] != 'clust') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4356 // do not display if not in cluster order
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4357 d3.select(params.root + ' .' + inst_rc + '_dendro_icons_group').selectAll('path').style('display', 'none');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4358 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4359
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4360 function still_hovering(inst_selection) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4361
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4362 if (d3.select(inst_selection).classed('hovering')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4363 // increase opacity
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4364 d3.selectAll(params.viz.root_tips + '_' + inst_rc + '_dendro_crop_tip').style('opacity', 1).style('display', 'block');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4365 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4366 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4367
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4368 zoom_crop_triangles(params, params.zoom_info, inst_rc);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4369 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4370
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4371 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4372 /* 61 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4373 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4374
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4375 module.exports = function run_dendro_filter(cgm, d, inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4376
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4377 var names = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4378
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4379 if (cgm.params.dendro_filter.row === false && cgm.params.dendro_filter.col === false && cgm.params.cat_filter.row === false && cgm.params.cat_filter.col === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4380
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4381 d3.select(cgm.params.root + ' .' + inst_rc + '_slider_group').style('opacity', 0.35).style('pointer-events', 'none');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4382
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4383 names[inst_rc] = d.all_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4384
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4385 var tmp_names = cgm.params.network_data[inst_rc + '_nodes_names'];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4386
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4387 // keep a backup of the inst_view
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4388 var inst_row_nodes = cgm.params.network_data.row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4389 var inst_col_nodes = cgm.params.network_data.col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4390
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4391 cgm.filter_viz_using_names(names);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4392
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4393 // overwrite with backup of original nodes
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4394 cgm.params.inst_nodes.row_nodes = inst_row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4395 cgm.params.inst_nodes.col_nodes = inst_col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4396
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4397 d3.selectAll(cgm.params.root + ' .dendro_shadow').transition().duration(1000).style('opacity', 0).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4398
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4399 // keep the names of all the nodes
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4400 cgm.params.dendro_filter[inst_rc] = tmp_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4401
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4402 /* reset filter */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4403 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4404
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4405 names[inst_rc] = cgm.params.dendro_filter[inst_rc];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4406
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4407 cgm.filter_viz_using_names(names);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4408 cgm.params.dendro_filter[inst_rc] = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4409 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4410 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4411
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4412 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4413 /* 62 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4414 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4415
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4416 module.exports = function zoom_crop_triangles(params, zoom_info, inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4417
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4418 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4419
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4420 // transform icons (undo zoom on triangles)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4421 d3.select(params.root + ' .row_dendro_icons_group').selectAll('path').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4422 var inst_x = params.viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4423 var inst_y = d.pos_mid;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4424 var curr_zoom = zoom_info.zoom_y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4425 var tri_dim = d3.select(this).data()[0].tri_dim;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4426 var inst_zoom = constrain_zoom(curr_zoom, tri_dim);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4427 return 'translate(' + inst_x + ',' + inst_y + ') ' + 'scale(1, ' + 1 / inst_zoom + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4428 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4429 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4430
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4431 // transform icons (undo zoom on triangles)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4432 d3.select(params.root + ' .col_dendro_icons_group').selectAll('path').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4433 var inst_x = d.pos_mid;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4434 var inst_y = params.viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4435 var curr_zoom = zoom_info.zoom_x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4436 var tri_dim = d3.select(this).data()[0].tri_dim;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4437 var inst_zoom = constrain_zoom(curr_zoom, tri_dim);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4438 return 'translate(' + inst_x + ',' + inst_y + ') ' + 'scale(' + 1 / inst_zoom + ', 1)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4439 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4440 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4441
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4442 function constrain_zoom(curr_zoom, tri_height) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4443 var inst_zoom;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4444 var default_tri_height = 10;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4445 if (tri_height * curr_zoom < default_tri_height) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4446 inst_zoom = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4447 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4448 var max_zoom = default_tri_height / tri_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4449 inst_zoom = curr_zoom / max_zoom;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4450 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4451 return inst_zoom;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4452 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4453 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4454
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4455 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4456 /* 63 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4457 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4458
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4459 var calc_cat_cluster_breakdown = __webpack_require__(64);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4460
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4461 module.exports = function make_cat_breakdown_graph(params, inst_rc, inst_data, dendro_info, selector, tooltip = false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4462
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4463 /*
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4464 This function is used to make the category breakdown graphs for tooltips on
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4465 dendrogram mousover and on dendrogram click modal popup.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4466 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4467
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4468 // in case sim_mat
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4469 if (inst_rc === 'both') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4470 inst_rc = 'row';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4471 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4472
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4473 var cat_breakdown = calc_cat_cluster_breakdown(params, inst_data, inst_rc);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4474
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4475 if (cat_breakdown.length > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4476
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4477 // put cluster information in dendro_tip
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4478 ///////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4479 var cluster_info_container = d3.select(selector + ' .cluster_info_container');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4480
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4481 // loop through cat_breakdown data
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4482 var super_string = ': ';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4483 var paragraph_string = '<p>';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4484 var width = 370;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4485 var bar_offset = 23;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4486 var bar_height = 20;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4487 var max_string_length = 25;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4488 var bar_width = 180;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4489 var title_height = 27;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4490 var shift_tooltip_left = 177;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4491
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4492 // these are the indexes where the number-of-nodes and the number of downsampled
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4493 // nodes are stored
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4494 var num_nodes_index = 4;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4495 var num_nodes_ds_index = 5;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4496 var offset_ds_count = 150;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4497 var binom_pval_index = 6;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4498
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4499 var is_downsampled = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4500 if (cat_breakdown[0].bar_data[0][num_nodes_ds_index] != null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4501 width = width + 100;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4502 shift_tooltip_left = shift_tooltip_left + offset_ds_count - 47;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4503 is_downsampled = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4504 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4505
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4506 // the index that will be used to generate the bars (will be different if
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4507 // downsampled)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4508 var cluster_total = dendro_info.all_names.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4509 var bars_index = num_nodes_index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4510 if (is_downsampled) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4511 bars_index = num_nodes_ds_index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4512
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4513 // calculate the total number of nodes in downsampled case
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4514 var inst_bar_data = cat_breakdown[0].bar_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4515 cluster_total = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4516 _.each(inst_bar_data, function (tmp_data) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4517 cluster_total = cluster_total + tmp_data[num_nodes_ds_index];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4518 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4519 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4520
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4521 // limit on the number of category types shown
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4522 var max_cats = 3;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4523 // limit the number of bars shown
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4524 var max_bars = 25;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4525
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4526 // calculate height needed for svg based on cat_breakdown data
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4527 var svg_height = 20;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4528 _.each(cat_breakdown.slice(0, max_cats), function (tmp_break) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4529 var num_bars = tmp_break.bar_data.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4530 if (num_bars > max_bars) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4531 num_bars = max_bars;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4532 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4533 svg_height = svg_height + title_height * (num_bars + 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4534 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4535
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4536 // Cluster Information Title (for tooltip only not modal)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4537 if (tooltip) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4538 cluster_info_container.append('text').text('Cluster Information');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4539 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4540
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4541 var main_dendro_svg = cluster_info_container.append('div').style('margin-top', '5px').classed('cat_graph', true).append('svg').style('height', svg_height + 'px').style('width', width + 'px');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4542
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4543 // make background
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4544 main_dendro_svg.append('rect').classed('cat_background', true).attr('height', svg_height + 'px').attr('width', width + 'px').attr('fill', 'white').attr('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4545
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4546 // the total amout to shift down the next category
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4547 var shift_down = title_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4548
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4549 // limit the category-types
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4550 cat_breakdown = cat_breakdown.slice(0, max_cats);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4551
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4552 _.each(cat_breakdown, function (cat_data) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4553
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4554 var max_bar_value = cat_data.bar_data[0][bars_index];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4555
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4556 // offset the count column based on how large the counts are
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4557 var digit_offset_scale = d3.scale.linear().domain([0, 100000]).range([20, 30]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4558
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4559 // only keep the top max_bars categories
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4560 cat_data.bar_data = cat_data.bar_data.slice(0, max_bars);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4561
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4562 cluster_info_container.style('margin-bottom', '5px');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4563
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4564 var cat_graph_group = main_dendro_svg.append('g').classed('cat_graph_group', true).attr('transform', 'translate(10, ' + shift_down + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4565
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4566 // shift down based on number of bars
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4567 shift_down = shift_down + title_height * (cat_data.bar_data.length + 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4568
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4569 var inst_title = cat_data.type_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4570 // ensure that title is not too long
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4571 if (inst_title.length >= max_string_length) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4572 inst_title = inst_title.slice(0, max_string_length) + '..';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4573 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4574
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4575 // make title
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4576 cat_graph_group.append('text').classed('cat_graph_title', true).text(inst_title).style('font-family', '"Helvetica Neue", Helvetica, Arial, sans-serif').style('font-weight', 800);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4577
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4578 // shift the position of the numbers based on the size of the number
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4579 var count_offset = digit_offset_scale(max_bar_value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4580
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4581 // Count Title
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4582 cat_graph_group.append('text').text('Count').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4583 var inst_x = bar_width + count_offset;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4584 var inst_translate = 'translate(' + inst_x + ', 0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4585 return inst_translate;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4586 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4587
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4588 // Percentage Title
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4589 cat_graph_group.append('text').text('Pct').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4590 var inst_x = bar_width + count_offset + 60;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4591 var inst_translate = 'translate(' + inst_x + ', 0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4592 return inst_translate;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4593 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4594
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4595 // Percentage Title
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4596 cat_graph_group.append('text').text('P-val').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4597 var inst_x = bar_width + count_offset + 115;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4598 var inst_translate = 'translate(' + inst_x + ', 0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4599 return inst_translate;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4600 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4601
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4602 // Count Downsampled Title
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4603 if (is_downsampled) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4604 cat_graph_group.append('text').text('Clusters').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4605 var inst_x = bar_width + offset_ds_count;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4606 var inst_translate = 'translate(' + inst_x + ', 0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4607 return inst_translate;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4608 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4609 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4610
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4611 var line_y = 4;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4612 cat_graph_group.append('line').attr('x1', 0).attr('x2', bar_width).attr('y1', line_y).attr('y2', line_y).attr('stroke', 'blue').attr('stroke-width', 1).attr('opacity', 1.0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4613
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4614 var cat_bar_container = cat_graph_group.append('g').classed('cat_bar_container', true).attr('transform', 'translate(0, 10)');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4615
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4616 // make bar groups (hold bar and text)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4617 var cat_bar_groups = cat_bar_container.selectAll('g').data(cat_data.bar_data).enter().append('g').attr('transform', function (d, i) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4618 var inst_y = i * bar_offset;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4619 return 'translate(0,' + inst_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4620 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4621
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4622 // bar length is max when all nodes in cluster are of
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4623 // a single cat
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4624 var bar_scale = d3.scale.linear().domain([0, max_bar_value]).range([0, bar_width]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4625
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4626 // make bars
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4627 cat_bar_groups.append('rect').attr('height', bar_height + 'px').attr('width', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4628 var inst_width = bar_scale(d[bars_index]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4629 return inst_width + 'px';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4630 }).attr('fill', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4631 // cat color is stored in the third element
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4632 return d[3];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4633 }).attr('opacity', params.viz.cat_colors.opacity).attr('stroke', 'grey').attr('stroke-width', '0.5px');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4634
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4635 // make bar labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4636 cat_bar_groups.append('text').classed('bar_labels', true).text(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4637 var inst_text = d[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4638 if (inst_text.indexOf(super_string) > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4639 inst_text = inst_text.split(super_string)[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4640 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4641 if (inst_text.indexOf(paragraph_string) > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4642 // required for Enrichr category names (needs improvements)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4643 inst_text = inst_text.split(paragraph_string)[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4644 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4645 // ensure that bar name is not too long
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4646 if (inst_text.length >= max_string_length) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4647 inst_text = inst_text.slice(0, max_string_length) + '..';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4648 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4649 return inst_text;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4650 }).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4651 return 'translate(5, ' + 0.75 * bar_height + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4652 }).attr('font-family', '"Helvetica Neue", Helvetica, Arial, sans-serif').attr('font-weight', 400).attr('text-anchor', 'right');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4653
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4654 // Count/Pct Rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4655 /////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4656 var shift_count_num = 35;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4657
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4658 cat_bar_groups.append('text').classed('count_labels', true).text(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4659 var inst_count = d[bars_index];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4660 inst_count = inst_count.toLocaleString();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4661 return String(inst_count);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4662 }).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4663 var inst_x = bar_width + count_offset + shift_count_num;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4664 var inst_y = 0.75 * bar_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4665 return 'translate(' + inst_x + ', ' + inst_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4666 }).attr('font-family', '"Helvetica Neue", Helvetica, Arial, sans-serif').attr('font-weight', 400).attr('text-anchor', 'end');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4667
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4668 cat_bar_groups.append('text').classed('count_labels', true).text(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4669 // calculate the percentage relative to the current cluster
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4670 var inst_count = d[bars_index] / cluster_total * 100;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4671 inst_count = Math.round(inst_count * 10) / 10;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4672 inst_count = inst_count.toLocaleString();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4673 return String(inst_count);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4674 }).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4675 var inst_x = bar_width + count_offset + shift_count_num + 47;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4676 var inst_y = 0.75 * bar_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4677 return 'translate(' + inst_x + ', ' + inst_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4678 }).attr('font-family', '"Helvetica Neue", Helvetica, Arial, sans-serif').attr('font-weight', 400).attr('text-anchor', 'end');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4679
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4680 // Binomial Test Pvals
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4681 cat_bar_groups.append('text').classed('count_labels', true).text(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4682 // calculate the percentage relative to the current cluster
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4683 var inst_count = d[binom_pval_index];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4684
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4685 if (inst_count < 0.1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4686 inst_count = parseFloat(inst_count.toPrecision(3));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4687 inst_count = inst_count.toExponential();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4688 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4689 inst_count = parseFloat(inst_count.toPrecision(2));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4690 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4691
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4692 // inst_count = inst_count.toLocaleString();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4693 return inst_count;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4694 }).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4695 var inst_x = bar_width + count_offset + shift_count_num + 112;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4696 var inst_y = 0.75 * bar_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4697 return 'translate(' + inst_x + ', ' + inst_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4698 }).attr('font-family', '"Helvetica Neue", Helvetica, Arial, sans-serif').attr('font-weight', 400).attr('text-anchor', 'end');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4699
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4700 if (is_downsampled) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4701 cat_bar_groups.append('text').classed('count_labels', true).text(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4702 return String(d[num_nodes_index].toLocaleString());
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4703 }).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4704 // downsampled cluster numbers are smaller and need less flexible offsetting
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4705 var inst_x = bar_width + shift_count_num + offset_ds_count + 20;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4706 var inst_y = 0.75 * bar_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4707 return 'translate(' + inst_x + ', ' + inst_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4708 }).attr('font-family', '"Helvetica Neue", Helvetica, Arial, sans-serif').attr('font-weight', 400).attr('text-anchor', 'end');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4709 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4710 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4711
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4712 // reposition tooltip
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4713 /////////////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4714 if (tooltip) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4715
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4716 var dendro_tip = d3.select(selector);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4717 var old_top = dendro_tip.style('top').split('.px')[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4718 var old_left = dendro_tip.style('left').split('.px')[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4719 var shift_top = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4720 var shift_left = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4721
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4722 // shifting
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4723 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4724
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4725 // rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4726 //////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4727 shift_top = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4728 shift_left = shift_tooltip_left;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4729
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4730 // // prevent graph from being too high
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4731 // if (dendro_info.pos_top < svg_height){
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4732 // // do not shift position of category breakdown graph
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4733 // // shift_top = -(svg_height + (dendro_info.pos_mid - dendro_info.pos_top)/2) ;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4734 // }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4735 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4736
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4737 // columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4738 //////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4739 shift_top = svg_height + 32;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4740 shift_left = 30;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4741 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4742
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4743 dendro_tip.style('top', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4744 var new_top = String(parseInt(old_top, 10) - shift_top) + 'px';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4745 return new_top;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4746 }).style('left', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4747 var new_left = String(parseInt(old_left, 10) - shift_left) + 'px';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4748 return new_left;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4749 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4750 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4751 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4752 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4753
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4754 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4755 /* 64 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4756 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4757
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4758 var binom_test = __webpack_require__(65);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4759
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4760 module.exports = function calc_cat_cluster_breakdown(params, inst_data, inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4761 // Category-breakdown of dendrogram-clusters
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4762 /////////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4763 /*
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4764 1. get information for nodes in cluster
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4765 2. find category-types that are string-type
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4766 3. count instances of each category name for each category-type
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4767 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4768
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4769 // in case sim_mat
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4770 if (inst_rc === 'both') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4771 inst_rc = 'row';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4772 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4773
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4774 // 1: get information for nodes in cluster
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4775 ///////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4776
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4777 // names of nodes in cluster
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4778 var clust_names = inst_data.all_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4779 // array of nodes in the cluster
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4780 var clust_nodes = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4781 var all_nodes = params.network_data[inst_rc + '_nodes'];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4782 var num_in_clust_index = null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4783 var is_downsampled = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4784
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4785 var inst_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4786 _.each(all_nodes, function (inst_node) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4787
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4788 inst_name = inst_node.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4789
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4790 if (clust_names.indexOf(inst_name) >= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4791 clust_nodes.push(inst_node);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4792 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4793 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4794
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4795 // 2: find category-types that are string-type
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4796 ///////////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4797
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4798 var cat_breakdown = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4799
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4800 if (params.viz.cat_info[inst_rc] !== null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4801
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4802 var inst_cat_info = params.viz.cat_info[inst_rc];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4803
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4804 // tmp list of all categories
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4805 var tmp_types_index = _.keys(inst_cat_info);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4806 // this will hold the indexes of string-type categories
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4807 var cat_types_index = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4808
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4809 // get category names (only include string-type categories)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4810 var cat_types_names = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4811 var type_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4812 var inst_index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4813 var cat_index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4814 for (var i = 0; i < tmp_types_index.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4815
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4816 cat_index = 'cat-' + String(i);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4817
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4818 if (params.viz.cat_info[inst_rc][cat_index].type === 'cat_strings') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4819 type_name = params.viz.cat_names[inst_rc][cat_index];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4820 cat_types_names.push(type_name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4821 cat_types_index.push(cat_index);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4822 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4823
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4824 // save number in clust category index if found
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4825 if (params.viz.cat_names[inst_rc][cat_index] === 'number in clust') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4826 num_in_clust_index = cat_index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4827 is_downsampled = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4828 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4829 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4830 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4831
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4832 var tmp_run_count = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4833 var inst_breakdown = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4834 var bar_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4835 var radix_param = 10;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4836
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4837 // sort by actual counts (rather than cluster counts)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4838 var sorting_index = 4;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4839 if (is_downsampled) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4840 sorting_index = 5;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4841 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4842
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4843 var no_title_given;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4844 if (type_name === cat_index) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4845 no_title_given = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4846 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4847 no_title_given = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4848 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4849
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4850 if (cat_types_names.length > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4851
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4852 // 3: count instances of each category name for each category-type
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4853 var cat_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4854 var num_in_clust = clust_names.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4855
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4856 // use the cat_hist to get the number of instances of this category in
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4857 // all rows/cols
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4858 // params
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4859
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4860 _.each(cat_types_index, function (cat_index) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4861
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4862 inst_index = cat_index.split('-')[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4863 type_name = cat_types_names[inst_index];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4864
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4865 if (no_title_given) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4866 if (cat_index.indexOf('-') >= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4867 var tmp_num = parseInt(cat_index.split('-')[1], radix_param) + 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4868 type_name = 'Category ' + String(tmp_num);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4869 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4870 // backup behavior
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4871 type_name = 'Category';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4872 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4873 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4874
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4875 tmp_run_count[type_name] = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4876
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4877 // loop through the nodes and keep a running count of categories
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4878 _.each(clust_nodes, function (tmp_node) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4879
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4880 cat_name = tmp_node[cat_index];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4881
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4882 if (cat_name.indexOf(': ') >= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4883 cat_name = cat_name.split(': ')[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4884 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4885
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4886 if (cat_name in tmp_run_count[type_name]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4887 tmp_run_count[type_name][cat_name].num_nodes = tmp_run_count[type_name][cat_name].num_nodes + 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4888
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4889 if (num_in_clust_index != null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4890 tmp_run_count[type_name][cat_name].num_nodes_ds = tmp_run_count[type_name][cat_name].num_nodes_ds + parseInt(tmp_node[num_in_clust_index].split(': ')[1], radix_param);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4891 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4892 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4893
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4894 tmp_run_count[type_name][cat_name] = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4895 tmp_run_count[type_name][cat_name].num_nodes = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4896 if (num_in_clust_index != null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4897 tmp_run_count[type_name][cat_name].num_nodes_ds = parseInt(tmp_node[num_in_clust_index].split(': ')[1], radix_param);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4898 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4899 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4900 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4901
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4902 inst_breakdown = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4903 inst_breakdown.type_name = type_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4904 inst_breakdown.num_in_clust = num_in_clust;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4905
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4906 // sort cat info in cat_breakdown
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4907 bar_data = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4908 var bar_color;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4909 var cat_title_and_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4910 var inst_run_count = tmp_run_count[type_name];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4911
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4912 for (var inst_cat in inst_run_count) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4913
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4914 var tot_num_cat = params.viz.cat_info[inst_rc][cat_index].cat_hist[inst_cat];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4915 var total_nodes = params.network_data[inst_rc + '_nodes'].length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4916 var expect_prob = tot_num_cat / total_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4917
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4918 // if no cat-title given
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4919 if (no_title_given) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4920 cat_title_and_name = inst_cat;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4921 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4922 cat_title_and_name = type_name + ': ' + inst_cat;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4923 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4924
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4925 // num_nodes: number of cat-nodes drawn in cluster
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4926 var num_nodes = inst_run_count[inst_cat].num_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4927
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4928 var actual_k = num_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4929 var pval = binom_test(actual_k, num_in_clust, expect_prob);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4930
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4931 // working on tracking the 'real' number of nodes, which is only different
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4932 // if downsampling has been done
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4933 if (_.has(inst_run_count[inst_cat], 'num_nodes_ds')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4934 var num_nodes_ds = inst_run_count[inst_cat].num_nodes_ds;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4935 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4936 num_nodes_ds = null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4937 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4938
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4939 bar_color = params.viz.cat_colors[inst_rc][cat_index][cat_title_and_name];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4940
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4941 bar_data.push([cat_index, cat_title_and_name, inst_run_count[inst_cat], bar_color, num_nodes, num_nodes_ds, pval]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4942 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4943
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4944 bar_data.sort(function (a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4945 return b[sorting_index] - a[sorting_index];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4946 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4947
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4948 inst_breakdown.bar_data = bar_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4949
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4950 cat_breakdown.push(inst_breakdown);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4951 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4952 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4953 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4954
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4955 return cat_breakdown;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4956 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4957
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4958 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4959 /* 65 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4960 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4961
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4962
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4963 // Load the math.js core
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4964 // Create a new, empty math.js instance
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4965 // It will only contain methods `import` and `config`
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4966 // math.import(require('mathjs/lib/type/fraction'));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4967 var p_dict = __webpack_require__(66);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4968 var core = __webpack_require__(67);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4969 var math = core.create();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4970
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4971 math.import(__webpack_require__(79));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4972
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4973 module.exports = function binom_test(actual_k, n, p) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4974
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4975 var fact = math.factorial;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4976 var pval;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4977
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4978 function binom_dist(k, n, p) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4979 var bin_coeff = fact(n) / (fact(k) * fact(n - k));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4980 p = bin_coeff * (Math.pow(p, k) * Math.pow(1 - p, n - k));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4981 return p;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4982 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4983
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4984 function my_binom_test_2(actual_k, n, p) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4985 var cp = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4986 var k;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4987 var dp;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4988 for (var inst_k = actual_k; inst_k < n + 1; inst_k++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4989 k = inst_k;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4990 dp = binom_dist(k, n, p);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4991 cp = cp + dp;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4992 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4993
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4994 return cp;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4995 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4996
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4997 // look up p-value from z-score using table
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4998 function binom_prop_table(actual_k, n, p) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	4999
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5000 // expected average number of successes
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5001 var mu = n * p;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5002
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5003 // standard deviation
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5004 var sigma = Math.sqrt(n * p * (1 - p));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5005
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5006 // how many standard deviations is the actual_k away
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5007 // from the expected value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5008 var z = (actual_k - mu) / sigma;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5009
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5010 var z_vals = p_dict.z;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5011 var p_vals = p_dict.p;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5012
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5013 var found_index = -1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5014 var found = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5015
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5016 for (var index = 0; index < z_vals.length; index++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5017 var inst_z = z_vals[index];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5018
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5019 // increasing inst_z until z is less than inst_z
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5020 if (z < inst_z && found === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5021 found_index = index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5022 found = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5023 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5024 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5025
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5026 // give it the smallest p-val if the z-score was larger than
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5027 // any in the table
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5028 if (found_index === -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5029 found_index = z_vals.length - 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5030 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5031 pval = p_vals[found_index];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5032
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5033 return pval;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5034 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5035
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5036 // calculate pval
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5037 pval = my_binom_test_2(actual_k, n, p);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5038 if (isNaN(pval)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5039 pval = binom_prop_table(actual_k, n, p);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5040 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5041
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5042 return pval;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5043 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5044
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5045 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5046 /* 66 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5047 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5048
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5049 module.exports = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5050 "p": [0.5, 0.48006119416162751, 0.46017216272297101, 0.4403823076297575, 0.42074029056089696, 0.4012936743170763, 0.38208857781104733, 0.3631693488243809, 0.34457825838967582, 0.32635522028791997, 0.30853753872598688, 0.29115968678834636, 0.27425311775007355, 0.25784611080586473, 0.24196365222307303, 0.22662735237686821, 0.21185539858339669, 0.19766254312269238, 0.18406012534675947, 0.17105612630848183, 0.15865525393145707, 0.14685905637589591, 0.13566606094638267, 0.12507193563715024, 0.11506967022170828, 0.10564977366685535, 0.096800484585610358, 0.088507991437401956, 0.080756659233771066, 0.073529259609648304, 0.066807201268858071, 0.060570758002059008, 0.054799291699557974, 0.049471468033648075, 0.044565462758543006, 0.040059156863817086, 0.035930319112925789, 0.032156774795613713, 0.028716559816001783, 0.025588059521638611, 0.022750131948179195, 0.020182215405704383, 0.017864420562816542, 0.015777607391090499, 0.013903447513498595, 0.012224472655044696, 0.010724110021675795, 0.0093867055348385662, 0.0081975359245961138, 0.0071428107352714152, 0.0062096653257761323, 0.0053861459540666843, 0.0046611880237187467, 0.0040245885427583027, 0.0034669738030406647, 0.0029797632350545551, 0.002555130330427929, 0.0021859614549132405, 0.0018658133003840339, 0.0015888696473648667, 0.0013498980316300933, 0.0011442068310226977, 0.00096760321321835631, 0.00081635231282856037, 0.00068713793791584708, 0.00057702504239076592, 0.00048342414238377663, 0.0004040578018640207, 0.00033692926567687988, 0.00028029327681617744, 0.00023262907903552502, 0.00019261557563563279, 0.00015910859015753364, 0.00013112015442048433, 0.00010779973347738823, 8.8417285200803773e-05, 7.2348043925119787e-05, 5.9058912418922374e-05, 4.8096344017602614e-05, 3.9075596597787456e-05, 3.1671241833119863e-05, 2.5608816474041489e-05, 2.0657506912546683e-05, 1.6623763729652213e-05, 1.334574901590631e-05, 1.0688525774934402e-05, 8.5399054709917942e-06, 6.8068765993340312e-06, 5.4125439077038407e-06, 4.293514469971858e-06, 3.3976731247300535e-06, 2.6822957796388472e-06, 2.1124547025028419e-06, 1.6596751443714555e-06, 1.3008074539172771e-06, 1.0170832425687032e-06, 7.9332815197558919e-07, 6.1730737200919249e-07, 4.7918327659031855e-07, 3.7106740796333271e-07, 2.8665157187919333e-07, 2.2090503226954194e-07, 1.6982674071475937e-07, 1.3024322953320117e-07, 9.9644263169334701e-08, 7.6049605164887e-08, 5.7901340399645569e-08, 4.3977115940058689e-08, 3.3320448485428448e-08, 2.518491005446105e-08, 1.8989562465887681e-08, 1.4283479893922661e-08, 1.0717590258310852e-08, 8.0223918506634739e-09, 5.9903714010635304e-09, 4.4621724539016108e-09, 3.3157459783261365e-09, 2.4578650618080152e-09, 1.8175078630994235e-09, 1.3407124440918662e-09, 9.8658764503769458e-10, 7.2422917051376055e-10, 5.303423262948808e-10, 3.8741473466756636e-10, 2.8231580370432682e-10, 2.0522634252189396e-10, 1.4882282217622966e-10, 1.0765746385121517e-10, 7.7688475817097756e-11, 5.592507575942645e-11, 4.0160005838590881e-11, 2.8768541736043109e-11, 2.055788909399508e-11, 1.4654650977302715e-11, 1.0420976987965154e-11, 7.3922577780177942e-12, 5.2309575441445253e-12, 3.6924994272355614e-12, 2.600126965638173e-12, 1.8264310619769611e-12, 1.279812543885835e-12, 8.9458895587698439e-13, 6.23784446333152e-13, 4.3388950271780343e-13, 3.0106279811174218e-13, 2.0838581586720548e-13, 1.4388386381575764e-13, 9.9103427495475088e-14, 6.8092248906200155e-14, 4.6670115887190274e-14, 3.1908916729108844e-14, 2.1762912097085575e-14, 1.4806537490047908e-14, 1.0048965656526223e-14, 6.8033115407739012e-15, 4.5946274357785623e-15, 3.095358771958668e-15, 2.0801863521393674e-15, 1.394517146659261e-15, 9.3255757716812045e-16, 6.2209605742717405e-16, 4.1397018162731219e-16, 2.7479593923982212e-16, 1.8196213635266084e-16, 1.2019351542735647e-16, 7.9197263146424757e-17, 5.2055697448902465e-17, 3.4131483264581459e-17, 2.232393197288031e-17, 1.456514112590909e-17, 9.4795348222032499e-18, 6.1544255908503949e-18, 3.985804962848151e-18, 2.5749715380118873e-18, 1.6594208699647519e-18, 1.0667637375474856e-18, 6.840807685935497e-19, 4.3759647993090167e-19, 2.7923343749396233e-19, 1.7774117841455144e-19, 1.1285884059538324e-19, 7.1484170112696837e-20, 4.516591491435403e-20, 2.8466774084602088e-20, 1.7897488120140146e-20, 1.1224633591327901e-20, 7.0222842404415411e-21, 4.3823862990664603e-21, 2.7281535713460872e-21, 1.6941535024881097e-21, 1.0494515075362604e-21, 6.4848144530772079e-22, 3.9972212057261192e-22, 2.4577864834723153e-22, 1.5074931688101589e-22, 9.2234135249393526e-23, 5.6292823113765143e-23, 3.4271987941135974e-23, 2.0813752194932085e-23, 1.2609160670206559e-23],
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5051 "z": [0.0, 0.050000000000000003, 0.10000000000000001, 0.15000000000000002, 0.20000000000000001, 0.25, 0.30000000000000004, 0.35000000000000003, 0.40000000000000002, 0.45000000000000001, 0.5, 0.55000000000000004, 0.60000000000000009, 0.65000000000000002, 0.70000000000000007, 0.75, 0.80000000000000004, 0.85000000000000009, 0.90000000000000002, 0.95000000000000007, 1.0, 1.05, 1.1000000000000001, 1.1500000000000001, 1.2000000000000002, 1.25, 1.3, 1.3500000000000001, 1.4000000000000001, 1.4500000000000002, 1.5, 1.55, 1.6000000000000001, 1.6500000000000001, 1.7000000000000002, 1.75, 1.8, 1.8500000000000001, 1.9000000000000001, 1.9500000000000002, 2.0, 2.0500000000000003, 2.1000000000000001, 2.1499999999999999, 2.2000000000000002, 2.25, 2.3000000000000003, 2.3500000000000001, 2.4000000000000004, 2.4500000000000002, 2.5, 2.5500000000000003, 2.6000000000000001, 2.6500000000000004, 2.7000000000000002, 2.75, 2.8000000000000003, 2.8500000000000001, 2.9000000000000004, 2.9500000000000002, 3.0, 3.0500000000000003, 3.1000000000000001, 3.1500000000000004, 3.2000000000000002, 3.25, 3.3000000000000003, 3.3500000000000001, 3.4000000000000004, 3.4500000000000002, 3.5, 3.5500000000000003, 3.6000000000000001, 3.6500000000000004, 3.7000000000000002, 3.75, 3.8000000000000003, 3.8500000000000001, 3.9000000000000004, 3.9500000000000002, 4.0, 4.0499999999999998, 4.1000000000000005, 4.1500000000000004, 4.2000000000000002, 4.25, 4.2999999999999998, 4.3500000000000005, 4.4000000000000004, 4.4500000000000002, 4.5, 4.5499999999999998, 4.6000000000000005, 4.6500000000000004, 4.7000000000000002, 4.75, 4.8000000000000007, 4.8500000000000005, 4.9000000000000004, 4.9500000000000002, 5.0, 5.0500000000000007, 5.1000000000000005, 5.1500000000000004, 5.2000000000000002, 5.25, 5.3000000000000007, 5.3500000000000005, 5.4000000000000004, 5.4500000000000002, 5.5, 5.5500000000000007, 5.6000000000000005, 5.6500000000000004, 5.7000000000000002, 5.75, 5.8000000000000007, 5.8500000000000005, 5.9000000000000004, 5.9500000000000002, 6.0, 6.0500000000000007, 6.1000000000000005, 6.1500000000000004, 6.2000000000000002, 6.25, 6.3000000000000007, 6.3500000000000005, 6.4000000000000004, 6.4500000000000002, 6.5, 6.5500000000000007, 6.6000000000000005, 6.6500000000000004, 6.7000000000000002, 6.75, 6.8000000000000007, 6.8500000000000005, 6.9000000000000004, 6.9500000000000002, 7.0, 7.0500000000000007, 7.1000000000000005, 7.1500000000000004, 7.2000000000000002, 7.25, 7.3000000000000007, 7.3500000000000005, 7.4000000000000004, 7.4500000000000002, 7.5, 7.5500000000000007, 7.6000000000000005, 7.6500000000000004, 7.7000000000000002, 7.75, 7.8000000000000007, 7.8500000000000005, 7.9000000000000004, 7.9500000000000002, 8.0, 8.0500000000000007, 8.0999999999999996, 8.1500000000000004, 8.2000000000000011, 8.25, 8.3000000000000007, 8.3499999999999996, 8.4000000000000004, 8.4500000000000011, 8.5, 8.5500000000000007, 8.5999999999999996, 8.6500000000000004, 8.7000000000000011, 8.75, 8.8000000000000007, 8.8499999999999996, 8.9000000000000004, 8.9500000000000011, 9.0, 9.0500000000000007, 9.0999999999999996, 9.1500000000000004, 9.2000000000000011, 9.25, 9.3000000000000007, 9.3499999999999996, 9.4000000000000004, 9.4500000000000011, 9.5, 9.5500000000000007, 9.6000000000000014, 9.6500000000000004, 9.7000000000000011, 9.75, 9.8000000000000007, 9.8500000000000014, 9.9000000000000004, 9.9500000000000011]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5052 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5053
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5054 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5055 /* 67 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5056 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5057
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5058 module.exports = __webpack_require__(68);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5059
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5060 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5061 /* 68 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5062 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5063
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5064 var isFactory = __webpack_require__(69).isFactory;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5065 var deepExtend = __webpack_require__(69).deepExtend;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5066 var typedFactory = __webpack_require__(70);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5067 var emitter = __webpack_require__(74);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5068
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5069 var importFactory = __webpack_require__(76);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5070 var configFactory = __webpack_require__(78);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5071
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5072 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5073 * Math.js core. Creates a new, empty math.js instance
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5074 * @param {Object} [options] Available options:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5075 * {number} epsilon
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5076 * Minimum relative difference between two
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5077 * compared values, used by all comparison functions.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5078 * {string} matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5079 * A string 'Matrix' (default) or 'Array'.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5080 * {string} number
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5081 * A string 'number' (default), 'BigNumber', or 'Fraction'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5082 * {number} precision
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5083 * The number of significant digits for BigNumbers.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5084 * Not applicable for Numbers.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5085 * {boolean} predictable
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5086 * Predictable output type of functions. When true,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5087 * output type depends only on the input types. When
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5088 * false (default), output type can vary depending
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5089 * on input values. For example `math.sqrt(-2)`
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5090 * returns `NaN` when predictable is false, and
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5091 * returns `complex('2i')` when true.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5092 * @returns {Object} Returns a bare-bone math.js instance containing
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5093 * functions:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5094 * - `import` to add new functions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5095 * - `config` to change configuration
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5096 * - `on`, `off`, `once`, `emit` for events
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5097 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5098 exports.create = function create(options) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5099 // simple test for ES5 support
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5100 if (typeof Object.create !== 'function') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5101 throw new Error('ES5 not supported by this JavaScript engine. ' + 'Please load the es5-shim and es5-sham library for compatibility.');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5102 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5103
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5104 // cached factories and instances
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5105 var factories = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5106 var instances = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5107
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5108 // create a namespace for the mathjs instance, and attach emitter functions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5109 var math = emitter.mixin({});
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5110 math.type = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5111 math.expression = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5112 transform: Object.create(math)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5113 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5114
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5115 // create a new typed instance
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5116 math.typed = typedFactory.create(math.type);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5117
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5118 // create configuration options. These are private
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5119 var _config = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5120 // minimum relative difference between two compared values,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5121 // used by all comparison functions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5122 epsilon: 1e-12,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5123
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5124 // type of default matrix output. Choose 'matrix' (default) or 'array'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5125 matrix: 'Matrix',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5126
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5127 // type of default number output. Choose 'number' (default) 'BigNumber', or 'Fraction
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5128 number: 'number',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5129
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5130 // number of significant digits in BigNumbers
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5131 precision: 64,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5132
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5133 // predictable output type of functions. When true, output type depends only
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5134 // on the input types. When false (default), output type can vary depending
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5135 // on input values. For example `math.sqrt(-2)` returns `NaN` when
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5136 // predictable is false, and returns `complex('2i')` when true.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5137 predictable: false
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5138 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5139
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5140 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5141 * Load a function or data type from a factory.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5142 * If the function or data type already exists, the existing instance is
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5143 * returned.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5144 * @param {{type: string, name: string, factory: Function}} factory
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5145 * @returns {*}
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5146 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5147 function load(factory) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5148 if (!isFactory(factory)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5149 throw new Error('Factory object with properties `type`, `name`, and `factory` expected');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5150 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5151
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5152 var index = factories.indexOf(factory);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5153 var instance;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5154 if (index === -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5155 // doesn't yet exist
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5156 if (factory.math === true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5157 // pass with math namespace
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5158 instance = factory.factory(math.type, _config, load, math.typed, math);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5159 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5160 instance = factory.factory(math.type, _config, load, math.typed);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5161 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5162
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5163 // append to the cache
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5164 factories.push(factory);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5165 instances.push(instance);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5166 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5167 // already existing function, return the cached instance
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5168 instance = instances[index];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5169 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5170
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5171 return instance;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5172 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5173
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5174 // load the import and config functions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5175 math['import'] = load(importFactory);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5176 math['config'] = load(configFactory);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5177
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5178 // apply options
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5179 if (options) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5180 math.config(options);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5181 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5182
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5183 return math;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5184 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5185
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5186 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5187 /* 69 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5188 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5189
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5190 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5191
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5192 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5193 * Clone an object
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5194 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5195 * clone(x)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5196 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5197 * Can clone any primitive type, array, and object.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5198 * If x has a function clone, this function will be invoked to clone the object.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5199 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5200 * @param {*} x
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5201 * @return {*} clone
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5202 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5203
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5204 exports.clone = function clone(x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5205 var type = typeof x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5206
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5207 // immutable primitive types
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5208 if (type === 'number' \|\| type === 'string' \|\| type === 'boolean' \|\| x === null \|\| x === undefined) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5209 return x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5210 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5211
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5212 // use clone function of the object when available
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5213 if (typeof x.clone === 'function') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5214 return x.clone();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5215 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5216
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5217 // array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5218 if (Array.isArray(x)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5219 return x.map(function (value) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5220 return clone(value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5221 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5222 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5223
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5224 if (x instanceof Number) return new Number(x.valueOf());
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5225 if (x instanceof String) return new String(x.valueOf());
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5226 if (x instanceof Boolean) return new Boolean(x.valueOf());
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5227 if (x instanceof Date) return new Date(x.valueOf());
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5228 if (x && x.isBigNumber === true) return x; // bignumbers are immutable
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5229 if (x instanceof RegExp) throw new TypeError('Cannot clone ' + x); // TODO: clone a RegExp
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5230
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5231 // object
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5232 var m = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5233 for (var key in x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5234 if (x.hasOwnProperty(key)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5235 m[key] = clone(x[key]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5236 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5237 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5238 return m;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5239 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5240
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5241 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5242 * Extend object a with the properties of object b
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5243 * @param {Object} a
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5244 * @param {Object} b
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5245 * @return {Object} a
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5246 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5247 exports.extend = function (a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5248 for (var prop in b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5249 if (b.hasOwnProperty(prop)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5250 a[prop] = b[prop];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5251 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5252 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5253 return a;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5254 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5255
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5256 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5257 * Deep extend an object a with the properties of object b
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5258 * @param {Object} a
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5259 * @param {Object} b
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5260 * @returns {Object}
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5261 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5262 exports.deepExtend = function deepExtend(a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5263 // TODO: add support for Arrays to deepExtend
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5264 if (Array.isArray(b)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5265 throw new TypeError('Arrays are not supported by deepExtend');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5266 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5267
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5268 for (var prop in b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5269 if (b.hasOwnProperty(prop)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5270 if (b[prop] && b[prop].constructor === Object) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5271 if (a[prop] === undefined) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5272 a[prop] = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5273 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5274 if (a[prop].constructor === Object) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5275 deepExtend(a[prop], b[prop]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5276 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5277 a[prop] = b[prop];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5278 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5279 } else if (Array.isArray(b[prop])) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5280 throw new TypeError('Arrays are not supported by deepExtend');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5281 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5282 a[prop] = b[prop];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5283 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5284 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5285 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5286 return a;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5287 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5288
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5289 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5290 * Deep test equality of all fields in two pairs of arrays or objects.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5291 * @param {Array \| Object} a
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5292 * @param {Array \| Object} b
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5293 * @returns {boolean}
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5294 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5295 exports.deepEqual = function deepEqual(a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5296 var prop, i, len;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5297 if (Array.isArray(a)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5298 if (!Array.isArray(b)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5299 return false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5300 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5301
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5302 if (a.length != b.length) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5303 return false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5304 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5305
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5306 for (i = 0, len = a.length; i < len; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5307 if (!exports.deepEqual(a[i], b[i])) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5308 return false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5309 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5310 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5311 return true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5312 } else if (a instanceof Object) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5313 if (Array.isArray(b) \|\| !(b instanceof Object)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5314 return false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5315 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5316
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5317 for (prop in a) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5318 //noinspection JSUnfilteredForInLoop
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5319 if (!exports.deepEqual(a[prop], b[prop])) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5320 return false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5321 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5322 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5323 for (prop in b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5324 //noinspection JSUnfilteredForInLoop
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5325 if (!exports.deepEqual(a[prop], b[prop])) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5326 return false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5327 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5328 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5329 return true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5330 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5331 return typeof a === typeof b && a == b;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5332 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5333 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5334
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5335 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5336 * Test whether the current JavaScript engine supports Object.defineProperty
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5337 * @returns {boolean} returns true if supported
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5338 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5339 exports.canDefineProperty = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5340 // test needed for broken IE8 implementation
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5341 try {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5342 if (Object.defineProperty) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5343 Object.defineProperty({}, 'x', { get: function () {} });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5344 return true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5345 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5346 } catch (e) {}
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5347
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5348 return false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5349 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5350
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5351 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5352 * Attach a lazy loading property to a constant.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5353 * The given function `fn` is called once when the property is first requested.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5354 * On older browsers (<IE8), the function will fall back to direct evaluation
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5355 * of the properties value.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5356 * @param {Object} object Object where to add the property
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5357 * @param {string} prop Property name
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5358 * @param {Function} fn Function returning the property value. Called
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5359 * without arguments.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5360 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5361 exports.lazy = function (object, prop, fn) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5362 if (exports.canDefineProperty()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5363 var _uninitialized = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5364 var _value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5365 Object.defineProperty(object, prop, {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5366 get: function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5367 if (_uninitialized) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5368 _value = fn();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5369 _uninitialized = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5370 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5371 return _value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5372 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5373
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5374 set: function (value) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5375 _value = value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5376 _uninitialized = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5377 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5378
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5379 configurable: true,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5380 enumerable: true
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5381 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5382 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5383 // fall back to immediate evaluation
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5384 object[prop] = fn();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5385 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5386 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5387
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5388 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5389 * Traverse a path into an object.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5390 * When a namespace is missing, it will be created
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5391 * @param {Object} object
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5392 * @param {string} path A dot separated string like 'name.space'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5393 * @return {Object} Returns the object at the end of the path
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5394 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5395 exports.traverse = function (object, path) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5396 var obj = object;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5397
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5398 if (path) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5399 var names = path.split('.');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5400 for (var i = 0; i < names.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5401 var name = names[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5402 if (!(name in obj)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5403 obj[name] = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5404 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5405 obj = obj[name];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5406 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5407 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5408
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5409 return obj;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5410 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5411
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5412 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5413 * Test whether an object is a factory. a factory has fields:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5414 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5415 * - factory: function (type: Object, config: Object, load: function, typed: function [, math: Object]) (required)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5416 * - name: string (optional)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5417 * - path: string A dot separated path (optional)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5418 * - math: boolean If true (false by default), the math namespace is passed
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5419 * as fifth argument of the factory function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5420 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5421 * @param {*} object
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5422 * @returns {boolean}
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5423 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5424 exports.isFactory = function (object) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5425 return object && typeof object.factory === 'function';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5426 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5427
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5428 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5429 /* 70 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5430 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5431
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5432 var typedFunction = __webpack_require__(71);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5433 var digits = __webpack_require__(72).digits;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5434
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5435 // returns a new instance of typed-function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5436 var createTyped = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5437 // initially, return the original instance of typed-function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5438 // consecutively, return a new instance from typed.create.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5439 createTyped = typedFunction.create;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5440 return typedFunction;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5441 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5442
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5443 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5444 * Factory function for creating a new typed instance
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5445 * @param {Object} type Object with data types like Complex and BigNumber
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5446 * @returns {Function}
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5447 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5448 exports.create = function create(type) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5449 // TODO: typed-function must be able to silently ignore signatures with unknown data types
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5450
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5451 // get a new instance of typed-function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5452 var typed = createTyped();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5453
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5454 // define all types. The order of the types determines in which order function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5455 // arguments are type-checked (so for performance it's important to put the
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5456 // most used types first).
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5457 typed.types = [{ name: 'number', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5458 return typeof x === 'number';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5459 } }, { name: 'Complex', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5460 return x && x.isComplex;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5461 } }, { name: 'BigNumber', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5462 return x && x.isBigNumber;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5463 } }, { name: 'Fraction', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5464 return x && x.isFraction;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5465 } }, { name: 'Unit', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5466 return x && x.isUnit;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5467 } }, { name: 'string', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5468 return typeof x === 'string';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5469 } }, { name: 'Array', test: Array.isArray }, { name: 'Matrix', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5470 return x && x.isMatrix;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5471 } }, { name: 'DenseMatrix', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5472 return x && x.isDenseMatrix;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5473 } }, { name: 'SparseMatrix', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5474 return x && x.isSparseMatrix;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5475 } }, { name: 'ImmutableDenseMatrix', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5476 return x && x.isImmutableDenseMatrix;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5477 } }, { name: 'Range', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5478 return x && x.isRange;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5479 } }, { name: 'Index', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5480 return x && x.isIndex;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5481 } }, { name: 'boolean', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5482 return typeof x === 'boolean';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5483 } }, { name: 'ResultSet', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5484 return x && x.isResultSet;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5485 } }, { name: 'Help', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5486 return x && x.isHelp;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5487 } }, { name: 'function', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5488 return typeof x === 'function';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5489 } }, { name: 'Date', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5490 return x instanceof Date;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5491 } }, { name: 'RegExp', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5492 return x instanceof RegExp;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5493 } }, { name: 'Object', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5494 return typeof x === 'object';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5495 } }, { name: 'null', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5496 return x === null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5497 } }, { name: 'undefined', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5498 return x === undefined;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5499 } }];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5500
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5501 // TODO: add conversion from BigNumber to number?
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5502 typed.conversions = [{
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5503 from: 'number',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5504 to: 'BigNumber',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5505 convert: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5506 // note: conversion from number to BigNumber can fail if x has >15 digits
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5507 if (digits(x) > 15) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5508 throw new TypeError('Cannot implicitly convert a number with >15 significant digits to BigNumber ' + '(value: ' + x + '). ' + 'Use function bignumber(x) to convert to BigNumber.');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5509 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5510 return new type.BigNumber(x);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5511 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5512 }, {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5513 from: 'number',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5514 to: 'Complex',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5515 convert: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5516 return new type.Complex(x, 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5517 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5518 }, {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5519 from: 'number',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5520 to: 'string',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5521 convert: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5522 return x + '';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5523 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5524 }, {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5525 from: 'BigNumber',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5526 to: 'Complex',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5527 convert: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5528 return new type.Complex(x.toNumber(), 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5529 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5530 }, {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5531 from: 'Fraction',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5532 to: 'Complex',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5533 convert: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5534 return new type.Complex(x.valueOf(), 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5535 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5536 }, {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5537 from: 'number',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5538 to: 'Fraction',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5539 convert: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5540 if (digits(x) > 15) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5541 throw new TypeError('Cannot implicitly convert a number with >15 significant digits to Fraction ' + '(value: ' + x + '). ' + 'Use function fraction(x) to convert to Fraction.');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5542 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5543 return new type.Fraction(x);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5544 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5545 }, {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5546 // FIXME: add conversion from Fraction to number, for example for `sqrt(fraction(1,3))`
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5547 // from: 'Fraction',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5548 // to: 'number',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5549 // convert: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5550 // return x.valueOf();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5551 // }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5552 //}, {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5553 from: 'string',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5554 to: 'number',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5555 convert: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5556 var n = Number(x);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5557 if (isNaN(n)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5558 throw new Error('Cannot convert "' + x + '" to a number');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5559 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5560 return n;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5561 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5562 }, {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5563 from: 'boolean',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5564 to: 'number',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5565 convert: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5566 return +x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5567 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5568 }, {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5569 from: 'boolean',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5570 to: 'BigNumber',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5571 convert: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5572 return new type.BigNumber(+x);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5573 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5574 }, {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5575 from: 'boolean',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5576 to: 'Fraction',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5577 convert: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5578 return new type.Fraction(+x);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5579 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5580 }, {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5581 from: 'boolean',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5582 to: 'string',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5583 convert: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5584 return +x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5585 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5586 }, {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5587 from: 'null',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5588 to: 'number',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5589 convert: function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5590 return 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5591 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5592 }, {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5593 from: 'null',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5594 to: 'string',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5595 convert: function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5596 return 'null';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5597 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5598 }, {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5599 from: 'null',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5600 to: 'BigNumber',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5601 convert: function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5602 return new type.BigNumber(0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5603 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5604 }, {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5605 from: 'null',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5606 to: 'Fraction',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5607 convert: function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5608 return new type.Fraction(0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5609 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5610 }, {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5611 from: 'Array',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5612 to: 'Matrix',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5613 convert: function (array) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5614 // TODO: how to decide on the right type of matrix to create?
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5615 return new type.DenseMatrix(array);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5616 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5617 }, {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5618 from: 'Matrix',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5619 to: 'Array',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5620 convert: function (matrix) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5621 return matrix.valueOf();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5622 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5623 }];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5624
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5625 return typed;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5626 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5627
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5628 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5629 /* 71 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5630 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5631
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5632 var __WEBPACK_AMD_DEFINE_FACTORY__, __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;/**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5633 * typed-function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5634 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5635 * Type checking for JavaScript functions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5636 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5637 * https://github.com/josdejong/typed-function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5638 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5639 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5640
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5641 (function (root, factory) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5642 if (true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5643 // AMD. Register as an anonymous module.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5644 !(__WEBPACK_AMD_DEFINE_ARRAY__ = [], __WEBPACK_AMD_DEFINE_FACTORY__ = (factory), __WEBPACK_AMD_DEFINE_RESULT__ = (typeof __WEBPACK_AMD_DEFINE_FACTORY__ === 'function' ? (__WEBPACK_AMD_DEFINE_FACTORY__.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__)) : __WEBPACK_AMD_DEFINE_FACTORY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5645 } else if (typeof exports === 'object') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5646 // OldNode. Does not work with strict CommonJS, but
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5647 // only CommonJS-like environments that support module.exports,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5648 // like OldNode.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5649 module.exports = factory();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5650 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5651 // Browser globals (root is window)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5652 root.typed = factory();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5653 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5654 })(this, function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5655 // factory function to create a new instance of typed-function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5656 // TODO: allow passing configuration, types, tests via the factory function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5657 function create() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5658 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5659 * Get a type test function for a specific data type
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5660 * @param {string} name Name of a data type like 'number' or 'string'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5661 * @returns {Function(obj: *) : boolean} Returns a type testing function.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5662 * Throws an error for an unknown type.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5663 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5664 function getTypeTest(name) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5665 var test;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5666 for (var i = 0; i < typed.types.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5667 var entry = typed.types[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5668 if (entry.name === name) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5669 test = entry.test;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5670 break;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5671 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5672 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5673
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5674 if (!test) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5675 var hint;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5676 for (i = 0; i < typed.types.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5677 entry = typed.types[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5678 if (entry.name.toLowerCase() == name.toLowerCase()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5679 hint = entry.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5680 break;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5681 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5682 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5683
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5684 throw new Error('Unknown type "' + name + '"' + (hint ? '. Did you mean "' + hint + '"?' : ''));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5685 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5686 return test;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5687 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5688
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5689 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5690 * Retrieve the function name from a set of functions, and check
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5691 * whether the name of all functions match (if given)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5692 * @param {Array.<function>} fns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5693 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5694 function getName(fns) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5695 var name = '';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5696
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5697 for (var i = 0; i < fns.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5698 var fn = fns[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5699
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5700 // merge function name when this is a typed function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5701 if (fn.signatures && fn.name != '') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5702 if (name == '') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5703 name = fn.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5704 } else if (name != fn.name) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5705 var err = new Error('Function names do not match (expected: ' + name + ', actual: ' + fn.name + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5706 err.data = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5707 actual: fn.name,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5708 expected: name
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5709 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5710 throw err;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5711 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5712 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5713 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5714
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5715 return name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5716 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5717
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5718 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5719 * Create an ArgumentsError. Creates messages like:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5720 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5721 * Unexpected type of argument (expected: ..., actual: ..., index: ...)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5722 * Too few arguments (expected: ..., index: ...)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5723 * Too many arguments (expected: ..., actual: ...)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5724 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5725 * @param {String} fn Function name
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5726 * @param {number} argCount Number of arguments
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5727 * @param {Number} index Current argument index
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5728 * @param {*} actual Current argument
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5729 * @param {string} [expected] An optional, comma separated string with
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5730 * expected types on given index
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5731 * @extends Error
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5732 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5733 function createError(fn, argCount, index, actual, expected) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5734 var actualType = getTypeOf(actual);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5735 var _expected = expected ? expected.split(',') : null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5736 var _fn = fn \|\| 'unnamed';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5737 var anyType = _expected && contains(_expected, 'any');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5738 var message;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5739 var data = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5740 fn: fn,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5741 index: index,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5742 actual: actual,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5743 expected: _expected
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5744 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5745
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5746 if (_expected) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5747 if (argCount > index && !anyType) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5748 // unexpected type
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5749 message = 'Unexpected type of argument in function ' + _fn + ' (expected: ' + _expected.join(' or ') + ', actual: ' + actualType + ', index: ' + index + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5750 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5751 // too few arguments
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5752 message = 'Too few arguments in function ' + _fn + ' (expected: ' + _expected.join(' or ') + ', index: ' + index + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5753 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5754 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5755 // too many arguments
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5756 message = 'Too many arguments in function ' + _fn + ' (expected: ' + index + ', actual: ' + argCount + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5757 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5758
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5759 var err = new TypeError(message);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5760 err.data = data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5761 return err;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5762 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5763
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5764 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5765 * Collection with function references (local shortcuts to functions)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5766 * @constructor
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5767 * @param {string} [name='refs'] Optional name for the refs, used to generate
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5768 * JavaScript code
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5769 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5770 function Refs(name) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5771 this.name = name \|\| 'refs';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5772 this.categories = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5773 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5774
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5775 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5776 * Add a function reference.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5777 * @param {Function} fn
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5778 * @param {string} [category='fn'] A function category, like 'fn' or 'signature'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5779 * @returns {string} Returns the function name, for example 'fn0' or 'signature2'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5780 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5781 Refs.prototype.add = function (fn, category) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5782 var cat = category \|\| 'fn';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5783 if (!this.categories[cat]) this.categories[cat] = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5784
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5785 var index = this.categories[cat].indexOf(fn);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5786 if (index == -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5787 index = this.categories[cat].length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5788 this.categories[cat].push(fn);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5789 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5790
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5791 return cat + index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5792 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5793
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5794 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5795 * Create code lines for all function references
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5796 * @returns {string} Returns the code containing all function references
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5797 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5798 Refs.prototype.toCode = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5799 var code = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5800 var path = this.name + '.categories';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5801 var categories = this.categories;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5802
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5803 for (var cat in categories) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5804 if (categories.hasOwnProperty(cat)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5805 var category = categories[cat];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5806
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5807 for (var i = 0; i < category.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5808 code.push('var ' + cat + i + ' = ' + path + '[\'' + cat + '\'][' + i + '];');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5809 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5810 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5811 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5812
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5813 return code.join('\n');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5814 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5815
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5816 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5817 * A function parameter
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5818 * @param {string \| string[] \| Param} types A parameter type like 'string',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5819 * 'number \| boolean'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5820 * @param {boolean} [varArgs=false] Variable arguments if true
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5821 * @constructor
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5822 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5823 function Param(types, varArgs) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5824 // parse the types, can be a string with types separated by pipe characters \|
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5825 if (typeof types === 'string') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5826 // parse variable arguments operator (ellipses '...number')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5827 var _types = types.trim();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5828 var _varArgs = _types.substr(0, 3) === '...';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5829 if (_varArgs) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5830 _types = _types.substr(3);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5831 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5832 if (_types === '') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5833 this.types = ['any'];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5834 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5835 this.types = _types.split('\|');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5836 for (var i = 0; i < this.types.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5837 this.types[i] = this.types[i].trim();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5838 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5839 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5840 } else if (Array.isArray(types)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5841 this.types = types;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5842 } else if (types instanceof Param) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5843 return types.clone();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5844 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5845 throw new Error('String or Array expected');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5846 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5847
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5848 // can hold a type to which to convert when handling this parameter
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5849 this.conversions = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5850 // TODO: implement better API for conversions, be able to add conversions via constructor (support a new type Object?)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5851
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5852 // variable arguments
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5853 this.varArgs = _varArgs \|\| varArgs \|\| false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5854
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5855 // check for any type arguments
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5856 this.anyType = this.types.indexOf('any') !== -1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5857 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5858
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5859 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5860 * Order Params
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5861 * any type ('any') will be ordered last, and object as second last (as other
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5862 * types may be an object as well, like Array).
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5863 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5864 * @param {Param} a
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5865 * @param {Param} b
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5866 * @returns {number} Returns 1 if a > b, -1 if a < b, and else 0.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5867 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5868 Param.compare = function (a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5869 // TODO: simplify parameter comparison, it's a mess
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5870 if (a.anyType) return 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5871 if (b.anyType) return -1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5872
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5873 if (contains(a.types, 'Object')) return 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5874 if (contains(b.types, 'Object')) return -1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5875
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5876 if (a.hasConversions()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5877 if (b.hasConversions()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5878 var i, ac, bc;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5879
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5880 for (i = 0; i < a.conversions.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5881 if (a.conversions[i] !== undefined) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5882 ac = a.conversions[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5883 break;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5884 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5885 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5886
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5887 for (i = 0; i < b.conversions.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5888 if (b.conversions[i] !== undefined) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5889 bc = b.conversions[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5890 break;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5891 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5892 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5893
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5894 return typed.conversions.indexOf(ac) - typed.conversions.indexOf(bc);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5895 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5896 return 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5897 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5898 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5899 if (b.hasConversions()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5900 return -1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5901 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5902 // both params have no conversions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5903 var ai, bi;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5904
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5905 for (i = 0; i < typed.types.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5906 if (typed.types[i].name === a.types[0]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5907 ai = i;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5908 break;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5909 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5910 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5911
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5912 for (i = 0; i < typed.types.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5913 if (typed.types[i].name === b.types[0]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5914 bi = i;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5915 break;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5916 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5917 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5918
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5919 return ai - bi;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5920 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5921 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5922 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5923
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5924 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5925 * Test whether this parameters types overlap an other parameters types.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5926 * @param {Param} other
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5927 * @return {boolean} Returns true when there are conflicting types
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5928 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5929 Param.prototype.overlapping = function (other) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5930 for (var i = 0; i < this.types.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5931 if (contains(other.types, this.types[i])) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5932 return true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5933 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5934 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5935 return false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5936 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5937
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5938 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5939 * Create a clone of this param
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5940 * @returns {Param} Returns a cloned version of this param
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5941 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5942 Param.prototype.clone = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5943 var param = new Param(this.types.slice(), this.varArgs);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5944 param.conversions = this.conversions.slice();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5945 return param;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5946 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5947
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5948 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5949 * Test whether this parameter contains conversions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5950 * @returns {boolean} Returns true if the parameter contains one or
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5951 * multiple conversions.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5952 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5953 Param.prototype.hasConversions = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5954 return this.conversions.length > 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5955 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5956
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5957 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5958 * Tests whether this parameters contains any of the provided types
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5959 * @param {Object} types A Map with types, like {'number': true}
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5960 * @returns {boolean} Returns true when the parameter contains any
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5961 * of the provided types
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5962 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5963 Param.prototype.contains = function (types) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5964 for (var i = 0; i < this.types.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5965 if (types[this.types[i]]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5966 return true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5967 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5968 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5969 return false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5970 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5971
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5972 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5973 * Return a string representation of this params types, like 'string' or
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5974 * 'number \| boolean' or '...number'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5975 * @param {boolean} [toConversion] If true, the returned types string
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5976 * contains the types where the parameter
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5977 * will convert to. If false (default)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5978 * the "from" types are returned
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5979 * @returns {string}
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5980 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5981 Param.prototype.toString = function (toConversion) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5982 var types = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5983 var keys = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5984
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5985 for (var i = 0; i < this.types.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5986 var conversion = this.conversions[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5987 var type = toConversion && conversion ? conversion.to : this.types[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5988 if (!(type in keys)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5989 keys[type] = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5990 types.push(type);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5991 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5992 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5993
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5994 return (this.varArgs ? '...' : '') + types.join('\|');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5995 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5996
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5997 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5998 * A function signature
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	5999 * @param {string \| string[] \| Param[]} params
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6000 * Array with the type(s) of each parameter,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6001 * or a comma separated string with types
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6002 * @param {Function} fn The actual function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6003 * @constructor
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6004 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6005 function Signature(params, fn) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6006 var _params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6007 if (typeof params === 'string') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6008 _params = params !== '' ? params.split(',') : [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6009 } else if (Array.isArray(params)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6010 _params = params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6011 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6012 throw new Error('string or Array expected');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6013 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6014
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6015 this.params = new Array(_params.length);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6016 for (var i = 0; i < _params.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6017 var param = new Param(_params[i]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6018 this.params[i] = param;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6019 if (i === _params.length - 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6020 // the last argument
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6021 this.varArgs = param.varArgs;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6022 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6023 // non-last argument
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6024 if (param.varArgs) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6025 throw new SyntaxError('Unexpected variable arguments operator "..."');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6026 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6027 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6028 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6029
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6030 this.fn = fn;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6031 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6032
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6033 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6034 * Create a clone of this signature
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6035 * @returns {Signature} Returns a cloned version of this signature
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6036 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6037 Signature.prototype.clone = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6038 return new Signature(this.params.slice(), this.fn);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6039 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6040
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6041 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6042 * Expand a signature: split params with union types in separate signatures
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6043 * For example split a Signature "string \| number" into two signatures.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6044 * @return {Signature[]} Returns an array with signatures (at least one)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6045 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6046 Signature.prototype.expand = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6047 var signatures = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6048
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6049 function recurse(signature, path) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6050 if (path.length < signature.params.length) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6051 var i, newParam, conversion;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6052
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6053 var param = signature.params[path.length];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6054 if (param.varArgs) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6055 // a variable argument. do not split the types in the parameter
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6056 newParam = param.clone();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6057
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6058 // add conversions to the parameter
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6059 // recurse for all conversions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6060 for (i = 0; i < typed.conversions.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6061 conversion = typed.conversions[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6062 if (!contains(param.types, conversion.from) && contains(param.types, conversion.to)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6063 var j = newParam.types.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6064 newParam.types[j] = conversion.from;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6065 newParam.conversions[j] = conversion;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6066 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6067 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6068
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6069 recurse(signature, path.concat(newParam));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6070 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6071 // split each type in the parameter
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6072 for (i = 0; i < param.types.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6073 recurse(signature, path.concat(new Param(param.types[i])));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6074 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6075
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6076 // recurse for all conversions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6077 for (i = 0; i < typed.conversions.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6078 conversion = typed.conversions[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6079 if (!contains(param.types, conversion.from) && contains(param.types, conversion.to)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6080 newParam = new Param(conversion.from);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6081 newParam.conversions[0] = conversion;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6082 recurse(signature, path.concat(newParam));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6083 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6084 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6085 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6086 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6087 signatures.push(new Signature(path, signature.fn));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6088 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6089 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6090
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6091 recurse(this, []);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6092
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6093 return signatures;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6094 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6095
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6096 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6097 * Compare two signatures.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6098 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6099 * When two params are equal and contain conversions, they will be sorted
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6100 * by lowest index of the first conversions.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6101 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6102 * @param {Signature} a
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6103 * @param {Signature} b
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6104 * @returns {number} Returns 1 if a > b, -1 if a < b, and else 0.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6105 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6106 Signature.compare = function (a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6107 if (a.params.length > b.params.length) return 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6108 if (a.params.length < b.params.length) return -1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6109
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6110 // count the number of conversions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6111 var i;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6112 var len = a.params.length; // a and b have equal amount of params
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6113 var ac = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6114 var bc = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6115 for (i = 0; i < len; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6116 if (a.params[i].hasConversions()) ac++;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6117 if (b.params[i].hasConversions()) bc++;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6118 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6119
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6120 if (ac > bc) return 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6121 if (ac < bc) return -1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6122
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6123 // compare the order per parameter
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6124 for (i = 0; i < a.params.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6125 var cmp = Param.compare(a.params[i], b.params[i]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6126 if (cmp !== 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6127 return cmp;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6128 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6129 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6130
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6131 return 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6132 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6133
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6134 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6135 * Test whether any of the signatures parameters has conversions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6136 * @return {boolean} Returns true when any of the parameters contains
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6137 * conversions.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6138 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6139 Signature.prototype.hasConversions = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6140 for (var i = 0; i < this.params.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6141 if (this.params[i].hasConversions()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6142 return true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6143 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6144 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6145 return false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6146 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6147
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6148 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6149 * Test whether this signature should be ignored.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6150 * Checks whether any of the parameters contains a type listed in
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6151 * typed.ignore
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6152 * @return {boolean} Returns true when the signature should be ignored
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6153 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6154 Signature.prototype.ignore = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6155 // create a map with ignored types
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6156 var types = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6157 for (var i = 0; i < typed.ignore.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6158 types[typed.ignore[i]] = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6159 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6160
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6161 // test whether any of the parameters contains this type
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6162 for (i = 0; i < this.params.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6163 if (this.params[i].contains(types)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6164 return true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6165 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6166 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6167
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6168 return false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6169 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6170
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6171 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6172 * Generate the code to invoke this signature
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6173 * @param {Refs} refs
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6174 * @param {string} prefix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6175 * @returns {string} Returns code
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6176 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6177 Signature.prototype.toCode = function (refs, prefix) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6178 var code = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6179
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6180 var args = new Array(this.params.length);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6181 for (var i = 0; i < this.params.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6182 var param = this.params[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6183 var conversion = param.conversions[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6184 if (param.varArgs) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6185 args[i] = 'varArgs';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6186 } else if (conversion) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6187 args[i] = refs.add(conversion.convert, 'convert') + '(arg' + i + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6188 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6189 args[i] = 'arg' + i;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6190 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6191 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6192
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6193 var ref = this.fn ? refs.add(this.fn, 'signature') : undefined;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6194 if (ref) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6195 return prefix + 'return ' + ref + '(' + args.join(', ') + '); // signature: ' + this.params.join(', ');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6196 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6197
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6198 return code.join('\n');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6199 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6200
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6201 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6202 * Return a string representation of the signature
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6203 * @returns {string}
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6204 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6205 Signature.prototype.toString = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6206 return this.params.join(', ');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6207 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6208
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6209 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6210 * A group of signatures with the same parameter on given index
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6211 * @param {Param[]} path
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6212 * @param {Signature} [signature]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6213 * @param {Node[]} childs
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6214 * @constructor
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6215 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6216 function Node(path, signature, childs) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6217 this.path = path \|\| [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6218 this.param = path[path.length - 1] \|\| null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6219 this.signature = signature \|\| null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6220 this.childs = childs \|\| [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6221 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6222
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6223 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6224 * Generate code for this group of signatures
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6225 * @param {Refs} refs
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6226 * @param {string} prefix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6227 * @param {Node \| undefined} [anyType] Sibling of this node with any type parameter
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6228 * @returns {string} Returns the code as string
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6229 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6230 Node.prototype.toCode = function (refs, prefix, anyType) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6231 // TODO: split this function in multiple functions, it's too large
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6232 var code = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6233
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6234 if (this.param) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6235 var index = this.path.length - 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6236 var conversion = this.param.conversions[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6237 var comment = '// type: ' + (conversion ? conversion.from + ' (convert to ' + conversion.to + ')' : this.param);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6238
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6239 // non-root node (path is non-empty)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6240 if (this.param.varArgs) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6241 if (this.param.anyType) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6242 // variable arguments with any type
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6243 code.push(prefix + 'if (arguments.length > ' + index + ') {');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6244 code.push(prefix + ' var varArgs = [];');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6245 code.push(prefix + ' for (var i = ' + index + '; i < arguments.length; i++) {');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6246 code.push(prefix + ' varArgs.push(arguments[i]);');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6247 code.push(prefix + ' }');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6248 code.push(this.signature.toCode(refs, prefix + ' '));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6249 code.push(prefix + '}');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6250 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6251 // variable arguments with a fixed type
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6252 var getTests = function (types, arg) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6253 var tests = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6254 for (var i = 0; i < types.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6255 tests[i] = refs.add(getTypeTest(types[i]), 'test') + '(' + arg + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6256 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6257 return tests.join(' \|\| ');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6258 }.bind(this);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6259
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6260 var allTypes = this.param.types;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6261 var exactTypes = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6262 for (var i = 0; i < allTypes.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6263 if (this.param.conversions[i] === undefined) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6264 exactTypes.push(allTypes[i]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6265 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6266 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6267
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6268 code.push(prefix + 'if (' + getTests(allTypes, 'arg' + index) + ') { ' + comment);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6269 code.push(prefix + ' var varArgs = [arg' + index + '];');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6270 code.push(prefix + ' for (var i = ' + (index + 1) + '; i < arguments.length; i++) {');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6271 code.push(prefix + ' if (' + getTests(exactTypes, 'arguments[i]') + ') {');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6272 code.push(prefix + ' varArgs.push(arguments[i]);');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6273
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6274 for (var i = 0; i < allTypes.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6275 var conversion_i = this.param.conversions[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6276 if (conversion_i) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6277 var test = refs.add(getTypeTest(allTypes[i]), 'test');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6278 var convert = refs.add(conversion_i.convert, 'convert');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6279 code.push(prefix + ' }');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6280 code.push(prefix + ' else if (' + test + '(arguments[i])) {');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6281 code.push(prefix + ' varArgs.push(' + convert + '(arguments[i]));');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6282 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6283 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6284 code.push(prefix + ' } else {');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6285 code.push(prefix + ' throw createError(name, arguments.length, i, arguments[i], \'' + exactTypes.join(',') + '\');');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6286 code.push(prefix + ' }');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6287 code.push(prefix + ' }');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6288 code.push(this.signature.toCode(refs, prefix + ' '));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6289 code.push(prefix + '}');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6290 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6291 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6292 if (this.param.anyType) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6293 // any type
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6294 code.push(prefix + '// type: any');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6295 code.push(this._innerCode(refs, prefix, anyType));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6296 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6297 // regular type
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6298 var type = this.param.types[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6299 var test = type !== 'any' ? refs.add(getTypeTest(type), 'test') : null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6300
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6301 code.push(prefix + 'if (' + test + '(arg' + index + ')) { ' + comment);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6302 code.push(this._innerCode(refs, prefix + ' ', anyType));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6303 code.push(prefix + '}');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6304 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6305 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6306 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6307 // root node (path is empty)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6308 code.push(this._innerCode(refs, prefix, anyType));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6309 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6310
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6311 return code.join('\n');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6312 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6313
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6314 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6315 * Generate inner code for this group of signatures.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6316 * This is a helper function of Node.prototype.toCode
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6317 * @param {Refs} refs
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6318 * @param {string} prefix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6319 * @param {Node \| undefined} [anyType] Sibling of this node with any type parameter
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6320 * @returns {string} Returns the inner code as string
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6321 * @private
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6322 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6323 Node.prototype._innerCode = function (refs, prefix, anyType) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6324 var code = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6325 var i;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6326
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6327 if (this.signature) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6328 code.push(prefix + 'if (arguments.length === ' + this.path.length + ') {');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6329 code.push(this.signature.toCode(refs, prefix + ' '));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6330 code.push(prefix + '}');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6331 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6332
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6333 var nextAnyType;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6334 for (i = 0; i < this.childs.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6335 if (this.childs[i].param.anyType) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6336 nextAnyType = this.childs[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6337 break;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6338 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6339 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6340
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6341 for (i = 0; i < this.childs.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6342 code.push(this.childs[i].toCode(refs, prefix, nextAnyType));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6343 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6344
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6345 if (anyType && !this.param.anyType) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6346 code.push(anyType.toCode(refs, prefix, nextAnyType));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6347 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6348
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6349 var exceptions = this._exceptions(refs, prefix);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6350 if (exceptions) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6351 code.push(exceptions);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6352 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6353
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6354 return code.join('\n');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6355 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6356
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6357 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6358 * Generate code to throw exceptions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6359 * @param {Refs} refs
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6360 * @param {string} prefix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6361 * @returns {string} Returns the inner code as string
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6362 * @private
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6363 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6364 Node.prototype._exceptions = function (refs, prefix) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6365 var index = this.path.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6366
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6367 if (this.childs.length === 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6368 // TODO: can this condition be simplified? (we have a fall-through here)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6369 return [prefix + 'if (arguments.length > ' + index + ') {', prefix + ' throw createError(name, arguments.length, ' + index + ', arguments[' + index + ']);', prefix + '}'].join('\n');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6370 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6371 var keys = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6372 var types = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6373
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6374 for (var i = 0; i < this.childs.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6375 var node = this.childs[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6376 if (node.param) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6377 for (var j = 0; j < node.param.types.length; j++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6378 var type = node.param.types[j];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6379 if (!(type in keys) && !node.param.conversions[j]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6380 keys[type] = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6381 types.push(type);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6382 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6383 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6384 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6385 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6386
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6387 return prefix + 'throw createError(name, arguments.length, ' + index + ', arguments[' + index + '], \'' + types.join(',') + '\');';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6388 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6389 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6390
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6391 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6392 * Split all raw signatures into an array with expanded Signatures
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6393 * @param {Object.<string, Function>} rawSignatures
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6394 * @return {Signature[]} Returns an array with expanded signatures
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6395 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6396 function parseSignatures(rawSignatures) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6397 // FIXME: need to have deterministic ordering of signatures, do not create via object
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6398 var signature;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6399 var keys = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6400 var signatures = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6401 var i;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6402
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6403 for (var types in rawSignatures) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6404 if (rawSignatures.hasOwnProperty(types)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6405 var fn = rawSignatures[types];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6406 signature = new Signature(types, fn);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6407
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6408 if (signature.ignore()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6409 continue;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6410 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6411
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6412 var expanded = signature.expand();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6413
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6414 for (i = 0; i < expanded.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6415 var signature_i = expanded[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6416 var key = signature_i.toString();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6417 var existing = keys[key];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6418 if (!existing) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6419 keys[key] = signature_i;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6420 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6421 var cmp = Signature.compare(signature_i, existing);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6422 if (cmp < 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6423 // override if sorted first
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6424 keys[key] = signature_i;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6425 } else if (cmp === 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6426 throw new Error('Signature "' + key + '" is defined twice');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6427 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6428 // else: just ignore
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6429 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6430 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6431 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6432 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6433
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6434 // convert from map to array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6435 for (key in keys) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6436 if (keys.hasOwnProperty(key)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6437 signatures.push(keys[key]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6438 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6439 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6440
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6441 // order the signatures
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6442 signatures.sort(function (a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6443 return Signature.compare(a, b);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6444 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6445
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6446 // filter redundant conversions from signatures with varArgs
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6447 // TODO: simplify this loop or move it to a separate function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6448 for (i = 0; i < signatures.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6449 signature = signatures[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6450
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6451 if (signature.varArgs) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6452 var index = signature.params.length - 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6453 var param = signature.params[index];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6454
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6455 var t = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6456 while (t < param.types.length) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6457 if (param.conversions[t]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6458 var type = param.types[t];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6459
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6460 for (var j = 0; j < signatures.length; j++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6461 var other = signatures[j];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6462 var p = other.params[index];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6463
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6464 if (other !== signature && p && contains(p.types, type) && !p.conversions[index]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6465 // this (conversion) type already exists, remove it
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6466 param.types.splice(t, 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6467 param.conversions.splice(t, 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6468 t--;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6469 break;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6470 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6471 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6472 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6473 t++;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6474 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6475 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6476 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6477
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6478 return signatures;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6479 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6480
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6481 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6482 * create a map with normalized signatures as key and the function as value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6483 * @param {Signature[]} signatures An array with split signatures
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6484 * @return {Object.<string, Function>} Returns a map with normalized
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6485 * signatures as key, and the function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6486 * as value.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6487 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6488 function mapSignatures(signatures) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6489 var normalized = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6490
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6491 for (var i = 0; i < signatures.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6492 var signature = signatures[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6493 if (signature.fn && !signature.hasConversions()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6494 var params = signature.params.join(',');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6495 normalized[params] = signature.fn;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6496 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6497 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6498
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6499 return normalized;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6500 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6501
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6502 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6503 * Parse signatures recursively in a node tree.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6504 * @param {Signature[]} signatures Array with expanded signatures
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6505 * @param {Param[]} path Traversed path of parameter types
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6506 * @return {Node} Returns a node tree
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6507 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6508 function parseTree(signatures, path) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6509 var i, signature;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6510 var index = path.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6511 var nodeSignature;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6512
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6513 var filtered = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6514 for (i = 0; i < signatures.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6515 signature = signatures[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6516
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6517 // filter the first signature with the correct number of params
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6518 if (signature.params.length === index && !nodeSignature) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6519 nodeSignature = signature;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6520 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6521
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6522 if (signature.params[index] != undefined) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6523 filtered.push(signature);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6524 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6525 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6526
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6527 // sort the filtered signatures by param
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6528 filtered.sort(function (a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6529 return Param.compare(a.params[index], b.params[index]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6530 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6531
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6532 // recurse over the signatures
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6533 var entries = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6534 for (i = 0; i < filtered.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6535 signature = filtered[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6536 // group signatures with the same param at current index
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6537 var param = signature.params[index];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6538
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6539 // TODO: replace the next filter loop
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6540 var existing = entries.filter(function (entry) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6541 return entry.param.overlapping(param);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6542 })[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6543
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6544 //var existing;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6545 //for (var j = 0; j < entries.length; j++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6546 // if (entries[j].param.overlapping(param)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6547 // existing = entries[j];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6548 // break;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6549 // }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6550 //}
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6551
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6552 if (existing) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6553 if (existing.param.varArgs) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6554 throw new Error('Conflicting types "' + existing.param + '" and "' + param + '"');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6555 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6556 existing.signatures.push(signature);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6557 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6558 entries.push({
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6559 param: param,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6560 signatures: [signature]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6561 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6562 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6563 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6564
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6565 // parse the childs
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6566 var childs = new Array(entries.length);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6567 for (i = 0; i < entries.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6568 var entry = entries[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6569 childs[i] = parseTree(entry.signatures, path.concat(entry.param));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6570 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6571
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6572 return new Node(path, nodeSignature, childs);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6573 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6574
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6575 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6576 * Generate an array like ['arg0', 'arg1', 'arg2']
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6577 * @param {number} count Number of arguments to generate
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6578 * @returns {Array} Returns an array with argument names
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6579 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6580 function getArgs(count) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6581 // create an array with all argument names
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6582 var args = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6583 for (var i = 0; i < count; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6584 args[i] = 'arg' + i;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6585 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6586
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6587 return args;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6588 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6589
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6590 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6591 * Compose a function from sub-functions each handling a single type signature.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6592 * Signatures:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6593 * typed(signature: string, fn: function)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6594 * typed(name: string, signature: string, fn: function)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6595 * typed(signatures: Object.<string, function>)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6596 * typed(name: string, signatures: Object.<string, function>)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6597 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6598 * @param {string \| null} name
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6599 * @param {Object.<string, Function>} signatures
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6600 * @return {Function} Returns the typed function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6601 * @private
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6602 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6603 function _typed(name, signatures) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6604 var refs = new Refs();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6605
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6606 // parse signatures, expand them
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6607 var _signatures = parseSignatures(signatures);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6608 if (_signatures.length == 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6609 throw new Error('No signatures provided');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6610 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6611
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6612 // parse signatures into a node tree
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6613 var node = parseTree(_signatures, []);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6614
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6615 //var util = require('util');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6616 //console.log('ROOT');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6617 //console.log(util.inspect(node, { depth: null }));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6618
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6619 // generate code for the typed function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6620 var code = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6621 var _name = name \|\| '';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6622 var _args = getArgs(maxParams(_signatures));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6623 code.push('function ' + _name + '(' + _args.join(', ') + ') {');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6624 code.push(' "use strict";');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6625 code.push(' var name = \'' + _name + '\';');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6626 code.push(node.toCode(refs, ' '));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6627 code.push('}');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6628
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6629 // generate body for the factory function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6630 var body = [refs.toCode(), 'return ' + code.join('\n')].join('\n');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6631
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6632 // evaluate the JavaScript code and attach function references
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6633 var factory = new Function(refs.name, 'createError', body);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6634 var fn = factory(refs, createError);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6635
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6636 //console.log('FN\n' + fn.toString()); // TODO: cleanup
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6637
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6638 // attach the signatures with sub-functions to the constructed function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6639 fn.signatures = mapSignatures(_signatures);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6640
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6641 return fn;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6642 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6643
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6644 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6645 * Calculate the maximum number of parameters in givens signatures
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6646 * @param {Signature[]} signatures
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6647 * @returns {number} The maximum number of parameters
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6648 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6649 function maxParams(signatures) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6650 var max = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6651
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6652 for (var i = 0; i < signatures.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6653 var len = signatures[i].params.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6654 if (len > max) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6655 max = len;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6656 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6657 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6658
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6659 return max;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6660 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6661
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6662 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6663 * Get the type of a value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6664 * @param {*} x
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6665 * @returns {string} Returns a string with the type of value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6666 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6667 function getTypeOf(x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6668 var obj;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6669
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6670 for (var i = 0; i < typed.types.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6671 var entry = typed.types[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6672
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6673 if (entry.name === 'Object') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6674 // Array and Date are also Object, so test for Object afterwards
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6675 obj = entry;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6676 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6677 if (entry.test(x)) return entry.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6678 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6679 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6680
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6681 // at last, test whether an object
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6682 if (obj && obj.test(x)) return obj.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6683
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6684 return 'unknown';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6685 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6686
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6687 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6688 * Test whether an array contains some entry
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6689 * @param {Array} array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6690 * @param {*} entry
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6691 * @return {boolean} Returns true if array contains entry, false if not.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6692 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6693 function contains(array, entry) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6694 return array.indexOf(entry) !== -1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6695 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6696
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6697 // data type tests
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6698 var types = [{ name: 'number', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6699 return typeof x === 'number';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6700 } }, { name: 'string', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6701 return typeof x === 'string';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6702 } }, { name: 'boolean', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6703 return typeof x === 'boolean';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6704 } }, { name: 'Function', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6705 return typeof x === 'function';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6706 } }, { name: 'Array', test: Array.isArray }, { name: 'Date', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6707 return x instanceof Date;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6708 } }, { name: 'RegExp', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6709 return x instanceof RegExp;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6710 } }, { name: 'Object', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6711 return typeof x === 'object';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6712 } }, { name: 'null', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6713 return x === null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6714 } }, { name: 'undefined', test: function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6715 return x === undefined;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6716 } }];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6717
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6718 // configuration
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6719 var config = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6720
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6721 // type conversions. Order is important
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6722 var conversions = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6723
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6724 // types to be ignored
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6725 var ignore = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6726
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6727 // temporary object for holding types and conversions, for constructing
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6728 // the `typed` function itself
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6729 // TODO: find a more elegant solution for this
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6730 var typed = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6731 config: config,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6732 types: types,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6733 conversions: conversions,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6734 ignore: ignore
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6735 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6736
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6737 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6738 * Construct the typed function itself with various signatures
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6739 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6740 * Signatures:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6741 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6742 * typed(signatures: Object.<string, function>)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6743 * typed(name: string, signatures: Object.<string, function>)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6744 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6745 typed = _typed('typed', {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6746 'Object': function (signatures) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6747 var fns = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6748 for (var signature in signatures) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6749 if (signatures.hasOwnProperty(signature)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6750 fns.push(signatures[signature]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6751 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6752 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6753 var name = getName(fns);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6754
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6755 return _typed(name, signatures);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6756 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6757 'string, Object': _typed,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6758 // TODO: add a signature 'Array.<function>'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6759 '...Function': function (fns) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6760 var err;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6761 var name = getName(fns);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6762 var signatures = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6763
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6764 for (var i = 0; i < fns.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6765 var fn = fns[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6766
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6767 // test whether this is a typed-function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6768 if (!(typeof fn.signatures === 'object')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6769 err = new TypeError('Function is no typed-function (index: ' + i + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6770 err.data = { index: i };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6771 throw err;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6772 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6773
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6774 // merge the signatures
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6775 for (var signature in fn.signatures) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6776 if (fn.signatures.hasOwnProperty(signature)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6777 if (signatures.hasOwnProperty(signature)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6778 if (fn.signatures[signature] !== signatures[signature]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6779 err = new Error('Signature "' + signature + '" is defined twice');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6780 err.data = { signature: signature };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6781 throw err;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6782 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6783 // else: both signatures point to the same function, that's fine
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6784 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6785 signatures[signature] = fn.signatures[signature];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6786 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6787 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6788 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6789 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6790
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6791 return _typed(name, signatures);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6792 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6793 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6794
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6795 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6796 * Find a specific signature from a (composed) typed function, for
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6797 * example:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6798 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6799 * typed.find(fn, ['number', 'string'])
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6800 * typed.find(fn, 'number, string')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6801 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6802 * Function find only only works for exact matches.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6803 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6804 * @param {Function} fn A typed-function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6805 * @param {string \| string[]} signature Signature to be found, can be
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6806 * an array or a comma separated string.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6807 * @return {Function} Returns the matching signature, or
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6808 * throws an errror when no signature
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6809 * is found.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6810 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6811 function find(fn, signature) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6812 if (!fn.signatures) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6813 throw new TypeError('Function is no typed-function');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6814 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6815
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6816 // normalize input
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6817 var arr;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6818 if (typeof signature === 'string') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6819 arr = signature.split(',');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6820 for (var i = 0; i < arr.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6821 arr[i] = arr[i].trim();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6822 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6823 } else if (Array.isArray(signature)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6824 arr = signature;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6825 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6826 throw new TypeError('String array or a comma separated string expected');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6827 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6828
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6829 var str = arr.join(',');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6830
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6831 // find an exact match
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6832 var match = fn.signatures[str];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6833 if (match) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6834 return match;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6835 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6836
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6837 // TODO: extend find to match non-exact signatures
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6838
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6839 throw new TypeError('Signature not found (signature: ' + (fn.name \|\| 'unnamed') + '(' + arr.join(', ') + '))');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6840 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6841
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6842 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6843 * Convert a given value to another data type.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6844 * @param {*} value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6845 * @param {string} type
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6846 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6847 function convert(value, type) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6848 var from = getTypeOf(value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6849
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6850 // check conversion is needed
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6851 if (type === from) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6852 return value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6853 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6854
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6855 for (var i = 0; i < typed.conversions.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6856 var conversion = typed.conversions[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6857 if (conversion.from === from && conversion.to === type) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6858 return conversion.convert(value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6859 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6860 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6861
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6862 throw new Error('Cannot convert from ' + from + ' to ' + type);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6863 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6864
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6865 // attach types and conversions to the final `typed` function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6866 typed.config = config;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6867 typed.types = types;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6868 typed.conversions = conversions;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6869 typed.ignore = ignore;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6870 typed.create = create;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6871 typed.find = find;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6872 typed.convert = convert;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6873
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6874 // add a type
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6875 typed.addType = function (type) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6876 if (!type \|\| typeof type.name !== 'string' \|\| typeof type.test !== 'function') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6877 throw new TypeError('Object with properties {name: string, test: function} expected');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6878 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6879
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6880 typed.types.push(type);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6881 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6882
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6883 // add a conversion
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6884 typed.addConversion = function (conversion) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6885 if (!conversion \|\| typeof conversion.from !== 'string' \|\| typeof conversion.to !== 'string' \|\| typeof conversion.convert !== 'function') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6886 throw new TypeError('Object with properties {from: string, to: string, convert: function} expected');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6887 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6888
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6889 typed.conversions.push(conversion);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6890 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6891
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6892 return typed;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6893 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6894
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6895 return create();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6896 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6897
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6898 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6899 /* 72 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6900 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6901
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6902 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6903
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6904 var NumberFormatter = __webpack_require__(73);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6905
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6906 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6907 * Test whether value is a number
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6908 * @param {*} value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6909 * @return {boolean} isNumber
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6910 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6911 exports.isNumber = function (value) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6912 return typeof value === 'number';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6913 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6914
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6915 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6916 * Check if a number is integer
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6917 * @param {number \| boolean} value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6918 * @return {boolean} isInteger
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6919 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6920 exports.isInteger = function (value) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6921 return isFinite(value) ? value == Math.round(value) : false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6922 // Note: we use ==, not ===, as we can have Booleans as well
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6923 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6924
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6925 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6926 * Calculate the sign of a number
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6927 * @param {number} x
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6928 * @returns {*}
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6929 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6930 exports.sign = Math.sign \|\| function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6931 if (x > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6932 return 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6933 } else if (x < 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6934 return -1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6935 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6936 return 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6937 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6938 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6939
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6940 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6941 * Convert a number to a formatted string representation.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6942 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6943 * Syntax:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6944 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6945 * format(value)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6946 * format(value, options)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6947 * format(value, precision)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6948 * format(value, fn)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6949 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6950 * Where:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6951 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6952 * {number} value The value to be formatted
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6953 * {Object} options An object with formatting options. Available options:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6954 * {string} notation
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6955 * Number notation. Choose from:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6956 * 'fixed' Always use regular number notation.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6957 * For example '123.40' and '14000000'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6958 * 'exponential' Always use exponential notation.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6959 * For example '1.234e+2' and '1.4e+7'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6960 * 'engineering' Always use engineering notation.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6961 * For example '123.4e+0' and '14.0e+6'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6962 * 'auto' (default) Regular number notation for numbers
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6963 * having an absolute value between
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6964 * `lower` and `upper` bounds, and uses
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6965 * exponential notation elsewhere.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6966 * Lower bound is included, upper bound
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6967 * is excluded.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6968 * For example '123.4' and '1.4e7'.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6969 * {number} precision A number between 0 and 16 to round
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6970 * the digits of the number.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6971 * In case of notations 'exponential' and
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6972 * 'auto', `precision` defines the total
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6973 * number of significant digits returned
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6974 * and is undefined by default.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6975 * In case of notation 'fixed',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6976 * `precision` defines the number of
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6977 * significant digits after the decimal
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6978 * point, and is 0 by default.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6979 * {Object} exponential An object containing two parameters,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6980 * {number} lower and {number} upper,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6981 * used by notation 'auto' to determine
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6982 * when to return exponential notation.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6983 * Default values are `lower=1e-3` and
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6984 * `upper=1e5`.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6985 * Only applicable for notation `auto`.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6986 * {Function} fn A custom formatting function. Can be used to override the
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6987 * built-in notations. Function `fn` is called with `value` as
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6988 * parameter and must return a string. Is useful for example to
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6989 * format all values inside a matrix in a particular way.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6990 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6991 * Examples:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6992 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6993 * format(6.4); // '6.4'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6994 * format(1240000); // '1.24e6'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6995 * format(1/3); // '0.3333333333333333'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6996 * format(1/3, 3); // '0.333'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6997 * format(21385, 2); // '21000'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6998 * format(12.071, {notation: 'fixed'}); // '12'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	6999 * format(2.3, {notation: 'fixed', precision: 2}); // '2.30'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7000 * format(52.8, {notation: 'exponential'}); // '5.28e+1'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7001 * format(12345678, {notation: 'engineering'}); // '12.345678e+6'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7002 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7003 * @param {number} value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7004 * @param {Object \| Function \| number} [options]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7005 * @return {string} str The formatted value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7006 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7007 exports.format = function (value, options) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7008 if (typeof options === 'function') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7009 // handle format(value, fn)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7010 return options(value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7011 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7012
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7013 // handle special cases
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7014 if (value === Infinity) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7015 return 'Infinity';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7016 } else if (value === -Infinity) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7017 return '-Infinity';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7018 } else if (isNaN(value)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7019 return 'NaN';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7020 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7021
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7022 // default values for options
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7023 var notation = 'auto';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7024 var precision = undefined;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7025
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7026 if (options) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7027 // determine notation from options
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7028 if (options.notation) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7029 notation = options.notation;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7030 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7031
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7032 // determine precision from options
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7033 if (exports.isNumber(options)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7034 precision = options;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7035 } else if (options.precision) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7036 precision = options.precision;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7037 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7038 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7039
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7040 // handle the various notations
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7041 switch (notation) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7042 case 'fixed':
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7043 return exports.toFixed(value, precision);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7044
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7045 case 'exponential':
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7046 return exports.toExponential(value, precision);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7047
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7048 case 'engineering':
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7049 return exports.toEngineering(value, precision);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7050
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7051 case 'auto':
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7052 return exports.toPrecision(value, precision, options && options.exponential)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7053
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7054 // remove trailing zeros after the decimal point
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7055 .replace(/((\.\d*?)(0+))($\|e)/, function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7056 var digits = arguments[2];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7057 var e = arguments[4];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7058 return digits !== '.' ? digits + e : e;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7059 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7060
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7061 default:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7062 throw new Error('Unknown notation "' + notation + '". ' + 'Choose "auto", "exponential", or "fixed".');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7063 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7064 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7065
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7066 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7067 * Format a number in exponential notation. Like '1.23e+5', '2.3e+0', '3.500e-3'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7068 * @param {number} value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7069 * @param {number} [precision] Number of digits in formatted output.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7070 * If not provided, the maximum available digits
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7071 * is used.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7072 * @returns {string} str
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7073 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7074 exports.toExponential = function (value, precision) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7075 return new NumberFormatter(value).toExponential(precision);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7076 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7077
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7078 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7079 * Format a number in engineering notation. Like '1.23e+6', '2.3e+0', '3.500e-3'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7080 * @param {number} value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7081 * @param {number} [precision] Number of digits in formatted output.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7082 * If not provided, the maximum available digits
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7083 * is used.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7084 * @returns {string} str
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7085 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7086 exports.toEngineering = function (value, precision) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7087 return new NumberFormatter(value).toEngineering(precision);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7088 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7089
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7090 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7091 * Format a number with fixed notation.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7092 * @param {number} value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7093 * @param {number} [precision=0] Optional number of decimals after the
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7094 * decimal point. Zero by default.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7095 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7096 exports.toFixed = function (value, precision) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7097 return new NumberFormatter(value).toFixed(precision);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7098 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7099
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7100 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7101 * Format a number with a certain precision
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7102 * @param {number} value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7103 * @param {number} [precision=undefined] Optional number of digits.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7104 * @param {{lower: number, upper: number}} [options] By default:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7105 * lower = 1e-3 (excl)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7106 * upper = 1e+5 (incl)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7107 * @return {string}
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7108 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7109 exports.toPrecision = function (value, precision, options) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7110 return new NumberFormatter(value).toPrecision(precision, options);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7111 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7112
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7113 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7114 * Count the number of significant digits of a number.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7115 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7116 * For example:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7117 * 2.34 returns 3
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7118 * 0.0034 returns 2
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7119 * 120.5e+30 returns 4
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7120 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7121 * @param {number} value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7122 * @return {number} digits Number of significant digits
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7123 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7124 exports.digits = function (value) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7125 return value.toExponential().replace(/e.*$/, '') // remove exponential notation
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7126 .replace(/^0\.?0*\|\./, '') // remove decimal point and leading zeros
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7127 .length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7128 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7129
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7130 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7131 * Minimum number added to one that makes the result different than one
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7132 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7133 exports.DBL_EPSILON = Number.EPSILON \|\| 2.2204460492503130808472633361816E-16;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7134
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7135 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7136 * Compares two floating point numbers.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7137 * @param {number} x First value to compare
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7138 * @param {number} y Second value to compare
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7139 * @param {number} [epsilon] The maximum relative difference between x and y
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7140 * If epsilon is undefined or null, the function will
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7141 * test whether x and y are exactly equal.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7142 * @return {boolean} whether the two numbers are nearly equal
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7143 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7144 exports.nearlyEqual = function (x, y, epsilon) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7145 // if epsilon is null or undefined, test whether x and y are exactly equal
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7146 if (epsilon == null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7147 return x == y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7148 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7149
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7150 // use "==" operator, handles infinities
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7151 if (x == y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7152 return true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7153 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7154
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7155 // NaN
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7156 if (isNaN(x) \|\| isNaN(y)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7157 return false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7158 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7159
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7160 // at this point x and y should be finite
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7161 if (isFinite(x) && isFinite(y)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7162 // check numbers are very close, needed when comparing numbers near zero
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7163 var diff = Math.abs(x - y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7164 if (diff < exports.DBL_EPSILON) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7165 return true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7166 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7167 // use relative error
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7168 return diff <= Math.max(Math.abs(x), Math.abs(y)) * epsilon;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7169 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7170 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7171
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7172 // Infinite and Number or negative Infinite and positive Infinite cases
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7173 return false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7174 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7175
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7176 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7177 /* 73 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7178 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7179
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7180 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7181
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7182 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7183 * Format a number using methods toPrecision, toFixed, toExponential.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7184 * @param {number \| string} value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7185 * @constructor
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7186 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7187
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7188 function NumberFormatter(value) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7189 // parse the input value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7190 var match = String(value).toLowerCase().match(/^0?(-?)(\d+\.?\d)(e([+-]?\d+))?$/);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7191 if (!match) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7192 throw new SyntaxError('Invalid number');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7193 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7194
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7195 var sign = match[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7196 var coefficients = match[2];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7197 var exponent = parseFloat(match[4] \|\| '0');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7198
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7199 var dot = coefficients.indexOf('.');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7200 exponent += dot !== -1 ? dot - 1 : coefficients.length - 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7201
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7202 this.sign = sign;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7203 this.coefficients = coefficients.replace('.', '') // remove the dot (must be removed before removing leading zeros)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7204 .replace(/^0*/, function (zeros) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7205 // remove leading zeros, add their count to the exponent
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7206 exponent -= zeros.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7207 return '';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7208 }).replace(/0*$/, '') // remove trailing zeros
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7209 .split('').map(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7210 return parseInt(d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7211 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7212
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7213 if (this.coefficients.length === 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7214 this.coefficients.push(0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7215 exponent++;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7216 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7217
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7218 this.exponent = exponent;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7219 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7220
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7221 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7222 * Format a number with engineering notation.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7223 * @param {number} [precision=0] Optional number of decimals after the
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7224 * decimal point. Zero by default.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7225 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7226 NumberFormatter.prototype.toEngineering = function (precision) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7227 var rounded = this.roundDigits(precision);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7228
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7229 var e = rounded.exponent;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7230 var c = rounded.coefficients;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7231
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7232 // find nearest lower multiple of 3 for exponent
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7233 var newExp = e % 3 === 0 ? e : e < 0 ? e - 3 - e % 3 : e - e % 3;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7234
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7235 // concatenate coefficients with necessary zeros
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7236 var significandsDiff = e >= 0 ? e : Math.abs(newExp);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7237
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7238 // add zeros if necessary (for ex: 1e+8)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7239 if (c.length - 1 < significandsDiff) c = c.concat(zeros(significandsDiff - (c.length - 1)));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7240
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7241 // find difference in exponents
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7242 var expDiff = Math.abs(e - newExp);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7243
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7244 var decimalIdx = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7245 var str = '';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7246
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7247 // push decimal index over by expDiff times
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7248 while (--expDiff >= 0) decimalIdx++;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7249
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7250 // if all coefficient values are zero after the decimal point, don't add a decimal value.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7251 // otherwise concat with the rest of the coefficients
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7252 var decimals = c.slice(decimalIdx).join('');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7253 var decimalVal = decimals.match(/[1-9]/) ? '.' + decimals : '';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7254
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7255 str = c.slice(0, decimalIdx).join('') + decimalVal;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7256
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7257 str += 'e' + (e >= 0 ? '+' : '') + newExp.toString();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7258 return rounded.sign + str;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7259 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7260
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7261 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7262 * Format a number with fixed notation.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7263 * @param {number} [precision=0] Optional number of decimals after the
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7264 * decimal point. Zero by default.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7265 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7266 NumberFormatter.prototype.toFixed = function (precision) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7267 var rounded = this.roundDigits(this.exponent + 1 + (precision \|\| 0));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7268 var c = rounded.coefficients;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7269 var p = rounded.exponent + 1; // exponent may have changed
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7270
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7271 // append zeros if needed
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7272 var pp = p + (precision \|\| 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7273 if (c.length < pp) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7274 c = c.concat(zeros(pp - c.length));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7275 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7276
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7277 // prepend zeros if needed
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7278 if (p < 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7279 c = zeros(-p + 1).concat(c);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7280 p = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7281 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7282
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7283 // insert a dot if needed
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7284 if (precision) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7285 c.splice(p, 0, p === 0 ? '0.' : '.');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7286 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7287
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7288 return this.sign + c.join('');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7289 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7290
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7291 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7292 * Format a number in exponential notation. Like '1.23e+5', '2.3e+0', '3.500e-3'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7293 * @param {number} [precision] Number of digits in formatted output.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7294 * If not provided, the maximum available digits
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7295 * is used.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7296 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7297 NumberFormatter.prototype.toExponential = function (precision) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7298 // round if needed, else create a clone
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7299 var rounded = precision ? this.roundDigits(precision) : this.clone();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7300 var c = rounded.coefficients;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7301 var e = rounded.exponent;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7302
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7303 // append zeros if needed
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7304 if (c.length < precision) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7305 c = c.concat(zeros(precision - c.length));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7306 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7307
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7308 // format as `C.CCCe+EEE` or `C.CCCe-EEE`
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7309 var first = c.shift();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7310 return this.sign + first + (c.length > 0 ? '.' + c.join('') : '') + 'e' + (e >= 0 ? '+' : '') + e;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7311 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7312
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7313 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7314 * Format a number with a certain precision
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7315 * @param {number} [precision=undefined] Optional number of digits.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7316 * @param {{lower: number \| undefined, upper: number \| undefined}} [options]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7317 * By default:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7318 * lower = 1e-3 (excl)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7319 * upper = 1e+5 (incl)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7320 * @return {string}
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7321 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7322 NumberFormatter.prototype.toPrecision = function (precision, options) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7323 // determine lower and upper bound for exponential notation.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7324 var lower = options && options.lower !== undefined ? options.lower : 1e-3;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7325 var upper = options && options.upper !== undefined ? options.upper : 1e+5;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7326
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7327 var abs = Math.abs(Math.pow(10, this.exponent));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7328 if (abs < lower \|\| abs >= upper) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7329 // exponential notation
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7330 return this.toExponential(precision);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7331 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7332 var rounded = precision ? this.roundDigits(precision) : this.clone();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7333 var c = rounded.coefficients;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7334 var e = rounded.exponent;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7335
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7336 // append trailing zeros
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7337 if (c.length < precision) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7338 c = c.concat(zeros(precision - c.length));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7339 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7340
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7341 // append trailing zeros
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7342 // TODO: simplify the next statement
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7343 c = c.concat(zeros(e - c.length + 1 + (c.length < precision ? precision - c.length : 0)));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7344
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7345 // prepend zeros
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7346 c = zeros(-e).concat(c);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7347
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7348 var dot = e > 0 ? e : 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7349 if (dot < c.length - 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7350 c.splice(dot + 1, 0, '.');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7351 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7352
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7353 return this.sign + c.join('');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7354 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7355 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7356
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7357 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7358 * Crete a clone of the NumberFormatter
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7359 * @return {NumberFormatter} Returns a clone of the NumberFormatter
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7360 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7361 NumberFormatter.prototype.clone = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7362 var clone = new NumberFormatter('0');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7363 clone.sign = this.sign;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7364 clone.coefficients = this.coefficients.slice(0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7365 clone.exponent = this.exponent;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7366 return clone;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7367 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7368
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7369 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7370 * Round the number of digits of a number *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7371 * @param {number} precision A positive integer
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7372 * @return {NumberFormatter} Returns a new NumberFormatter with the rounded
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7373 * digits
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7374 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7375 NumberFormatter.prototype.roundDigits = function (precision) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7376 var rounded = this.clone();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7377 var c = rounded.coefficients;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7378
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7379 // prepend zeros if needed
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7380 while (precision <= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7381 c.unshift(0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7382 rounded.exponent++;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7383 precision++;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7384 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7385
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7386 if (c.length > precision) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7387 var removed = c.splice(precision, c.length - precision);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7388
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7389 if (removed[0] >= 5) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7390 var i = precision - 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7391 c[i]++;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7392 while (c[i] === 10) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7393 c.pop();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7394 if (i === 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7395 c.unshift(0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7396 rounded.exponent++;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7397 i++;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7398 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7399 i--;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7400 c[i]++;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7401 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7402 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7403 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7404
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7405 return rounded;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7406 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7407
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7408 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7409 * Create an array filled with zeros.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7410 * @param {number} length
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7411 * @return {Array}
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7412 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7413 function zeros(length) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7414 var arr = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7415 for (var i = 0; i < length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7416 arr.push(0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7417 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7418 return arr;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7419 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7420
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7421 module.exports = NumberFormatter;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7422
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7423 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7424 /* 74 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7425 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7426
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7427 var Emitter = __webpack_require__(75);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7428
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7429 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7430 * Extend given object with emitter functions `on`, `off`, `once`, `emit`
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7431 * @param {Object} obj
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7432 * @return {Object} obj
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7433 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7434 exports.mixin = function (obj) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7435 // create event emitter
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7436 var emitter = new Emitter();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7437
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7438 // bind methods to obj (we don't want to expose the emitter.e Array...)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7439 obj.on = emitter.on.bind(emitter);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7440 obj.off = emitter.off.bind(emitter);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7441 obj.once = emitter.once.bind(emitter);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7442 obj.emit = emitter.emit.bind(emitter);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7443
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7444 return obj;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7445 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7446
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7447 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7448 /* 75 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7449 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7450
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7451 function E() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7452 // Keep this empty so it's easier to inherit from
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7453 // (via https://github.com/lipsmack from https://github.com/scottcorgan/tiny-emitter/issues/3)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7454 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7455
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7456 E.prototype = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7457 on: function (name, callback, ctx) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7458 var e = this.e \|\| (this.e = {});
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7459
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7460 (e[name] \|\| (e[name] = [])).push({
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7461 fn: callback,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7462 ctx: ctx
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7463 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7464
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7465 return this;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7466 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7467
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7468 once: function (name, callback, ctx) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7469 var self = this;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7470 function listener() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7471 self.off(name, listener);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7472 callback.apply(ctx, arguments);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7473 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7474
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7475 listener._ = callback;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7476 return this.on(name, listener, ctx);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7477 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7478
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7479 emit: function (name) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7480 var data = [].slice.call(arguments, 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7481 var evtArr = ((this.e \|\| (this.e = {}))[name] \|\| []).slice();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7482 var i = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7483 var len = evtArr.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7484
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7485 for (i; i < len; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7486 evtArr[i].fn.apply(evtArr[i].ctx, data);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7487 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7488
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7489 return this;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7490 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7491
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7492 off: function (name, callback) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7493 var e = this.e \|\| (this.e = {});
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7494 var evts = e[name];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7495 var liveEvents = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7496
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7497 if (evts && callback) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7498 for (var i = 0, len = evts.length; i < len; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7499 if (evts[i].fn !== callback && evts[i].fn._ !== callback) liveEvents.push(evts[i]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7500 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7501 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7502
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7503 // Remove event from queue to prevent memory leak
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7504 // Suggested by https://github.com/lazd
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7505 // Ref: https://github.com/scottcorgan/tiny-emitter/commit/c6ebfaa9bc973b33d110a84a307742b7cf94c953#commitcomment-5024910
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7506
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7507 liveEvents.length ? e[name] = liveEvents : delete e[name];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7508
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7509 return this;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7510 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7511 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7512
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7513 module.exports = E;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7514
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7515 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7516 /* 76 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7517 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7518
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7519 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7520
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7521 var lazy = __webpack_require__(69).lazy;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7522 var isFactory = __webpack_require__(69).isFactory;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7523 var traverse = __webpack_require__(69).traverse;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7524 var extend = __webpack_require__(69).extend;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7525 var ArgumentsError = __webpack_require__(77);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7526
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7527 function factory(type, config, load, typed, math) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7528 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7529 * Import functions from an object or a module
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7530 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7531 * Syntax:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7532 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7533 * math.import(object)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7534 * math.import(object, options)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7535 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7536 * Where:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7537 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7538 * - `object: Object`
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7539 * An object with functions to be imported.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7540 * - `options: Object` An object with import options. Available options:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7541 * - `override: boolean`
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7542 * If true, existing functions will be overwritten. False by default.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7543 * - `silent: boolean`
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7544 * If true, the function will not throw errors on duplicates or invalid
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7545 * types. False by default.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7546 * - `wrap: boolean`
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7547 * If true, the functions will be wrapped in a wrapper function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7548 * which converts data types like Matrix to primitive data types like Array.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7549 * The wrapper is needed when extending math.js with libraries which do not
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7550 * support these data type. False by default.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7551 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7552 * Examples:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7553 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7554 * // define new functions and variables
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7555 * math.import({
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7556 * myvalue: 42,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7557 * hello: function (name) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7558 * return 'hello, ' + name + '!';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7559 * }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7560 * });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7561 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7562 * // use the imported function and variable
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7563 * math.myvalue * 2; // 84
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7564 * math.hello('user'); // 'hello, user!'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7565 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7566 * // import the npm module 'numbers'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7567 * // (must be installed first with `npm install numbers`)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7568 * math.import(require('numbers'), {wrap: true});
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7569 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7570 * math.fibonacci(7); // returns 13
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7571 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7572 * @param {Object \| Array} object Object with functions to be imported.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7573 * @param {Object} [options] Import options.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7574 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7575 function math_import(object, options) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7576 var num = arguments.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7577 if (num != 1 && num != 2) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7578 throw new ArgumentsError('import', num, 1, 2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7579 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7580
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7581 if (!options) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7582 options = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7583 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7584
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7585 if (isFactory(object)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7586 _importFactory(object, options);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7587 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7588 // TODO: allow a typed-function with name too
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7589 else if (Array.isArray(object)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7590 object.forEach(function (entry) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7591 math_import(entry, options);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7592 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7593 } else if (typeof object === 'object') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7594 // a map with functions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7595 for (var name in object) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7596 if (object.hasOwnProperty(name)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7597 var value = object[name];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7598 if (isSupportedType(value)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7599 _import(name, value, options);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7600 } else if (isFactory(object)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7601 _importFactory(object, options);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7602 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7603 math_import(value, options);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7604 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7605 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7606 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7607 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7608 if (!options.silent) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7609 throw new TypeError('Factory, Object, or Array expected');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7610 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7611 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7612 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7613
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7614 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7615 * Add a property to the math namespace and create a chain proxy for it.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7616 * @param {string} name
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7617 * @param {*} value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7618 * @param {Object} options See import for a description of the options
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7619 * @private
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7620 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7621 function _import(name, value, options) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7622 if (options.wrap && typeof value === 'function') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7623 // create a wrapper around the function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7624 value = _wrap(value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7625 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7626
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7627 if (isTypedFunction(math[name]) && isTypedFunction(value)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7628 if (options.override) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7629 // give the typed function the right name
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7630 value = typed(name, value.signatures);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7631 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7632 // merge the existing and typed function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7633 value = typed(math[name], value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7634 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7635
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7636 math[name] = value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7637 _importTransform(name, value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7638 math.emit('import', name, function resolver() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7639 return value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7640 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7641 return;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7642 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7643
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7644 if (math[name] === undefined \|\| options.override) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7645 math[name] = value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7646 _importTransform(name, value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7647 math.emit('import', name, function resolver() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7648 return value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7649 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7650 return;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7651 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7652
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7653 if (!options.silent) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7654 throw new Error('Cannot import "' + name + '": already exists');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7655 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7656 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7657
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7658 function _importTransform(name, value) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7659 if (value && typeof value.transform === 'function') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7660 math.expression.transform[name] = value.transform;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7661 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7662 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7663
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7664 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7665 * Create a wrapper a round an function which converts the arguments
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7666 * to their primitive values (like convert a Matrix to Array)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7667 * @param {Function} fn
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7668 * @return {Function} Returns the wrapped function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7669 * @private
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7670 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7671 function _wrap(fn) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7672 var wrapper = function wrapper() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7673 var args = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7674 for (var i = 0, len = arguments.length; i < len; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7675 var arg = arguments[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7676 args[i] = arg && arg.valueOf();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7677 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7678 return fn.apply(math, args);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7679 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7680
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7681 if (fn.transform) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7682 wrapper.transform = fn.transform;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7683 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7684
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7685 return wrapper;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7686 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7687
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7688 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7689 * Import an instance of a factory into math.js
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7690 * @param {{factory: Function, name: string, path: string, math: boolean}} factory
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7691 * @param {Object} options See import for a description of the options
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7692 * @private
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7693 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7694 function _importFactory(factory, options) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7695 if (typeof factory.name === 'string') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7696 var name = factory.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7697 var namespace = factory.path ? traverse(math, factory.path) : math;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7698 var existing = namespace.hasOwnProperty(name) ? namespace[name] : undefined;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7699
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7700 var resolver = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7701 var instance = load(factory);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7702
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7703 if (isTypedFunction(existing) && isTypedFunction(instance)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7704 if (options.override) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7705 // replace the existing typed function (nothing to do)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7706 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7707 // merge the existing and new typed function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7708 instance = typed(existing, instance);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7709 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7710
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7711 return instance;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7712 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7713
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7714 if (existing === undefined \|\| options.override) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7715 return instance;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7716 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7717
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7718 if (!options.silent) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7719 throw new Error('Cannot import "' + name + '": already exists');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7720 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7721 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7722
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7723 if (factory.lazy !== false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7724 lazy(namespace, name, resolver);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7725 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7726 namespace[name] = resolver();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7727 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7728
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7729 math.emit('import', name, resolver, factory.path);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7730 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7731 // unnamed factory.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7732 // no lazy loading
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7733 load(factory);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7734 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7735 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7736
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7737 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7738 * Check whether given object is a type which can be imported
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7739 * @param {Function \| number \| string \| boolean \| null \| Unit \| Complex} object
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7740 * @return {boolean}
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7741 * @private
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7742 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7743 function isSupportedType(object) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7744 return typeof object == 'function' \|\| typeof object === 'number' \|\| typeof object === 'string' \|\| typeof object === 'boolean' \|\| object === null \|\| object && object.isUnit === true \|\| object && object.isComplex === true \|\| object && object.isBigNumber === true \|\| object && object.isFraction === true \|\| object && object.isMatrix === true \|\| object && Array.isArray(object) === true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7745 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7746
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7747 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7748 * Test whether a given thing is a typed-function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7749 * @param {*} fn
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7750 * @return {boolean} Returns true when `fn` is a typed-function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7751 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7752 function isTypedFunction(fn) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7753 return typeof fn === 'function' && typeof fn.signatures === 'object';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7754 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7755
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7756 return math_import;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7757 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7758
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7759 exports.math = true; // request access to the math namespace as 5th argument of the factory function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7760 exports.name = 'import';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7761 exports.factory = factory;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7762 exports.lazy = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7763
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7764 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7765 /* 77 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7766 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7767
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7768 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7769
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7770 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7771 * Create a syntax error with the message:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7772 * 'Wrong number of arguments in function <fn> (<count> provided, <min>-<max> expected)'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7773 * @param {string} fn Function name
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7774 * @param {number} count Actual argument count
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7775 * @param {number} min Minimum required argument count
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7776 * @param {number} [max] Maximum required argument count
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7777 * @extends Error
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7778 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7779
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7780 function ArgumentsError(fn, count, min, max) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7781 if (!(this instanceof ArgumentsError)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7782 throw new SyntaxError('Constructor must be called with the new operator');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7783 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7784
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7785 this.fn = fn;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7786 this.count = count;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7787 this.min = min;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7788 this.max = max;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7789
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7790 this.message = 'Wrong number of arguments in function ' + fn + ' (' + count + ' provided, ' + min + (max != undefined ? '-' + max : '') + ' expected)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7791
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7792 this.stack = new Error().stack;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7793 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7794
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7795 ArgumentsError.prototype = new Error();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7796 ArgumentsError.prototype.constructor = Error;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7797 ArgumentsError.prototype.name = 'ArgumentsError';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7798 ArgumentsError.prototype.isArgumentsError = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7799
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7800 module.exports = ArgumentsError;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7801
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7802 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7803 /* 78 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7804 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7805
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7806 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7807
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7808 var object = __webpack_require__(69);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7809
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7810 function factory(type, config, load, typed, math) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7811 var MATRIX = ['Matrix', 'Array']; // valid values for option matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7812 var NUMBER = ['number', 'BigNumber', 'Fraction']; // valid values for option number
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7813
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7814 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7815 * Set configuration options for math.js, and get current options.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7816 * Will emit a 'config' event, with arguments (curr, prev).
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7817 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7818 * Syntax:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7819 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7820 * math.config(config: Object): Object
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7821 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7822 * Examples:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7823 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7824 * math.config().number; // outputs 'number'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7825 * math.eval('0.4'); // outputs number 0.4
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7826 * math.config({number: 'Fraction'});
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7827 * math.eval('0.4'); // outputs Fraction 2/5
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7828 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7829 * @param {Object} [options] Available options:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7830 * {number} epsilon
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7831 * Minimum relative difference between two
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7832 * compared values, used by all comparison functions.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7833 * {string} matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7834 * A string 'Matrix' (default) or 'Array'.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7835 * {string} number
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7836 * A string 'number' (default), 'BigNumber', or 'Fraction'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7837 * {number} precision
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7838 * The number of significant digits for BigNumbers.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7839 * Not applicable for Numbers.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7840 * {string} parenthesis
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7841 * How to display parentheses in LaTeX and string
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7842 * output.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7843 * @return {Object} Returns the current configuration
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7844 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7845 function _config(options) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7846 if (options) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7847 var prev = object.clone(config);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7848
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7849 // validate some of the options
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7850 validateOption(options, 'matrix', MATRIX);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7851 validateOption(options, 'number', NUMBER);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7852
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7853 // merge options
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7854 object.deepExtend(config, options);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7855
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7856 var curr = object.clone(config);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7857
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7858 // emit 'config' event
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7859 math.emit('config', curr, prev);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7860
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7861 return curr;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7862 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7863 return object.clone(config);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7864 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7865 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7866
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7867 // attach the valid options to the function so they can be extended
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7868 _config.MATRIX = MATRIX;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7869 _config.NUMBER = NUMBER;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7870
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7871 return _config;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7872 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7873
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7874 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7875 * Test whether an Array contains a specific item.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7876 * @param {Array.<string>} array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7877 * @param {string} item
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7878 * @return {boolean}
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7879 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7880 function contains(array, item) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7881 return array.indexOf(item) !== -1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7882 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7883
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7884 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7885 * Find a string in an array. Case insensitive search
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7886 * @param {Array.<string>} array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7887 * @param {string} item
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7888 * @return {number} Returns the index when found. Returns -1 when not found
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7889 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7890 function findIndex(array, item) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7891 return array.map(function (i) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7892 return i.toLowerCase();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7893 }).indexOf(item.toLowerCase());
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7894 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7895
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7896 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7897 * Validate an option
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7898 * @param {Object} options Object with options
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7899 * @param {string} name Name of the option to validate
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7900 * @param {Array.<string>} values Array with valid values for this option
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7901 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7902 function validateOption(options, name, values) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7903 if (options[name] !== undefined && !contains(values, options[name])) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7904 var index = findIndex(values, options[name]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7905 if (index !== -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7906 // right value, wrong casing
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7907 // TODO: lower case values are deprecated since v3, remove this warning some day.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7908 console.warn('Warning: Wrong casing for configuration option "' + name + '", should be "' + values[index] + '" instead of "' + options[name] + '".');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7909
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7910 options[name] = values[index]; // change the option to the right casing
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7911 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7912 // unknown value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7913 console.warn('Warning: Unknown value "' + options[name] + '" for configuration option "' + name + '". Available options: ' + values.map(JSON.stringify).join(', ') + '.');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7914 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7915 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7916 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7917
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7918 exports.name = 'config';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7919 exports.math = true; // request the math namespace as fifth argument
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7920 exports.factory = factory;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7921
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7922 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7923 /* 79 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7924 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7925
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7926 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7927
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7928 var deepMap = __webpack_require__(80);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7929
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7930 function factory(type, config, load, typed) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7931 var gamma = load(__webpack_require__(81));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7932 var latex = __webpack_require__(89);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7933
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7934 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7935 * Compute the factorial of a value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7936 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7937 * Factorial only supports an integer value as argument.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7938 * For matrices, the function is evaluated element wise.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7939 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7940 * Syntax:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7941 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7942 * math.factorial(n)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7943 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7944 * Examples:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7945 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7946 * math.factorial(5); // returns 120
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7947 * math.factorial(3); // returns 6
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7948 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7949 * See also:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7950 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7951 * combinations, gamma, permutations
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7952 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7953 * @param {number \| BigNumber \| Array \| Matrix} n An integer number
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7954 * @return {number \| BigNumber \| Array \| Matrix} The factorial of `n`
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7955 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7956 var factorial = typed('factorial', {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7957 'number': function (n) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7958 if (n < 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7959 throw new Error('Value must be non-negative');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7960 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7961
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7962 return gamma(n + 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7963 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7964
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7965 'BigNumber': function (n) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7966 if (n.isNegative()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7967 throw new Error('Value must be non-negative');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7968 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7969
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7970 return gamma(n.plus(1));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7971 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7972
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7973 'Array \| Matrix': function (n) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7974 return deepMap(n, factorial);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7975 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7976 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7977
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7978 factorial.toTex = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7979 1: '\\left(${args[0]}\\right)' + latex.operators['factorial']
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7980 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7981
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7982 return factorial;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7983 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7984
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7985 exports.name = 'factorial';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7986 exports.factory = factory;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7987
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7988 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7989 /* 80 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7990 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7991
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7992 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7993
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7994 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7995 * Execute the callback function element wise for each element in array and any
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7996 * nested array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7997 * Returns an array with the results
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7998 * @param {Array \| Matrix} array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	7999 * @param {Function} callback The callback is called with two parameters:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8000 * value1 and value2, which contain the current
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8001 * element of both arrays.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8002 * @param {boolean} [skipZeros] Invoke callback function for non-zero values only.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8003 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8004 * @return {Array \| Matrix} res
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8005 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8006
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8007 module.exports = function deepMap(array, callback, skipZeros) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8008 if (array && typeof array.map === 'function') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8009 // TODO: replace array.map with a for loop to improve performance
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8010 return array.map(function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8011 return deepMap(x, callback, skipZeros);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8012 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8013 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8014 return callback(array);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8015 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8016 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8017
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8018 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8019 /* 81 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8020 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8021
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8022 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8023
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8024 var deepMap = __webpack_require__(80);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8025 var isInteger = __webpack_require__(72).isInteger;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8026
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8027 function factory(type, config, load, typed) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8028 var multiply = load(__webpack_require__(82));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8029 var pow = load(__webpack_require__(97));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8030
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8031 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8032 * Compute the gamma function of a value using Lanczos approximation for
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8033 * small values, and an extended Stirling approximation for large values.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8034 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8035 * For matrices, the function is evaluated element wise.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8036 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8037 * Syntax:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8038 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8039 * math.gamma(n)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8040 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8041 * Examples:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8042 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8043 * math.gamma(5); // returns 24
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8044 * math.gamma(-0.5); // returns -3.5449077018110335
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8045 * math.gamma(math.i); // returns -0.15494982830180973 - 0.49801566811835596i
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8046 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8047 * See also:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8048 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8049 * combinations, factorial, permutations
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8050 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8051 * @param {number \| Array \| Matrix} n A real or complex number
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8052 * @return {number \| Array \| Matrix} The gamma of `n`
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8053 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8054 var gamma = typed('gamma', {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8055 'number': function (n) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8056 var t, x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8057
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8058 if (isInteger(n)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8059 if (n <= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8060 return isFinite(n) ? Infinity : NaN;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8061 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8062
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8063 if (n > 171) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8064 return Infinity; // Will overflow
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8065 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8066
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8067 var value = n - 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8068 var res = n - 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8069 while (value > 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8070 res *= value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8071 value--;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8072 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8073
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8074 if (res == 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8075 res = 1; // 0! is per definition 1
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8076 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8077
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8078 return res;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8079 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8080
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8081 if (n < 0.5) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8082 return Math.PI / (Math.sin(Math.PI * n) * gamma(1 - n));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8083 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8084
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8085 if (n >= 171.35) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8086 return Infinity; // will overflow
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8087 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8088
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8089 if (n > 85.0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8090 // Extended Stirling Approx
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8091 var twoN = n * n;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8092 var threeN = twoN * n;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8093 var fourN = threeN * n;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8094 var fiveN = fourN * n;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8095 return Math.sqrt(2 * Math.PI / n) * Math.pow(n / Math.E, n) * (1 + 1 / (12 * n) + 1 / (288 * twoN) - 139 / (51840 * threeN) - 571 / (2488320 * fourN) + 163879 / (209018880 * fiveN) + 5246819 / (75246796800 * fiveN * n));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8096 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8097
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8098 --n;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8099 x = p[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8100 for (var i = 1; i < p.length; ++i) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8101 x += p[i] / (n + i);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8102 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8103
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8104 t = n + g + 0.5;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8105 return Math.sqrt(2 * Math.PI) * Math.pow(t, n + 0.5) * Math.exp(-t) * x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8106 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8107
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8108 'Complex': function (n) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8109 var t, x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8110
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8111 if (n.im == 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8112 return gamma(n.re);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8113 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8114
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8115 n = new type.Complex(n.re - 1, n.im);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8116 x = new type.Complex(p[0], 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8117 for (var i = 1; i < p.length; ++i) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8118 var real = n.re + i; // x += p[i]/(n+i)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8119 var den = real * real + n.im * n.im;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8120 if (den != 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8121 x.re += p[i] * real / den;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8122 x.im += -(p[i] * n.im) / den;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8123 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8124 x.re = p[i] < 0 ? -Infinity : Infinity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8125 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8126 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8127
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8128 t = new type.Complex(n.re + g + 0.5, n.im);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8129 var twoPiSqrt = Math.sqrt(2 * Math.PI);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8130
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8131 n.re += 0.5;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8132 var result = pow(t, n);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8133 if (result.im == 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8134 // sqrt(2PI)result
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8135 result.re *= twoPiSqrt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8136 } else if (result.re == 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8137 result.im *= twoPiSqrt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8138 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8139 result.re *= twoPiSqrt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8140 result.im *= twoPiSqrt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8141 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8142
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8143 var r = Math.exp(-t.re); // exp(-t)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8144 t.re = r * Math.cos(-t.im);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8145 t.im = r * Math.sin(-t.im);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8146
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8147 return multiply(multiply(result, t), x);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8148 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8149
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8150 'BigNumber': function (n) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8151 if (n.isInteger()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8152 return n.isNegative() \|\| n.isZero() ? new type.BigNumber(Infinity) : bigFactorial(n.minus(1));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8153 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8154
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8155 if (!n.isFinite()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8156 return new type.BigNumber(n.isNegative() ? NaN : Infinity);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8157 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8158
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8159 throw new Error('Integer BigNumber expected');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8160 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8161
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8162 'Array \| Matrix': function (n) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8163 return deepMap(n, gamma);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8164 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8165 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8166
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8167 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8168 * Calculate factorial for a BigNumber
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8169 * @param {BigNumber} n
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8170 * @returns {BigNumber} Returns the factorial of n
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8171 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8172 function bigFactorial(n) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8173 if (n.isZero()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8174 return new type.BigNumber(1); // 0! is per definition 1
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8175 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8176
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8177 var precision = config.precision + (Math.log(n.toNumber()) \| 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8178 var Big = type.BigNumber.clone({ precision: precision });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8179
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8180 var res = new Big(n);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8181 var value = n.toNumber() - 1; // number
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8182 while (value > 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8183 res = res.times(value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8184 value--;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8185 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8186
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8187 return new type.BigNumber(res.toPrecision(type.BigNumber.precision));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8188 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8189
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8190 gamma.toTex = { 1: '\\Gamma\\left(${args[0]}\\right)' };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8191
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8192 return gamma;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8193 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8194
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8195 // TODO: comment on the variables g and p
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8196
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8197 var g = 4.7421875;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8198
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8199 var p = [0.99999999999999709182, 57.156235665862923517, -59.597960355475491248, 14.136097974741747174, -0.49191381609762019978, 0.33994649984811888699e-4, 0.46523628927048575665e-4, -0.98374475304879564677e-4, 0.15808870322491248884e-3, -0.21026444172410488319e-3, 0.21743961811521264320e-3, -0.16431810653676389022e-3, 0.84418223983852743293e-4, -0.26190838401581408670e-4, 0.36899182659531622704e-5];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8200
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8201 exports.name = 'gamma';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8202 exports.factory = factory;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8203
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8204 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8205 /* 82 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8206 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8207
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8208 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8209
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8210 var extend = __webpack_require__(69).extend;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8211 var array = __webpack_require__(83);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8212
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8213 function factory(type, config, load, typed) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8214 var latex = __webpack_require__(89);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8215
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8216 var matrix = load(__webpack_require__(90));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8217 var addScalar = load(__webpack_require__(91));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8218 var multiplyScalar = load(__webpack_require__(92));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8219 var equalScalar = load(__webpack_require__(93));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8220
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8221 var algorithm11 = load(__webpack_require__(95));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8222 var algorithm14 = load(__webpack_require__(96));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8223
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8224 var DenseMatrix = type.DenseMatrix;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8225 var SparseMatrix = type.SparseMatrix;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8226
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8227 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8228 * Multiply two values, `x * y`.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8229 * For matrices, the matrix product is calculated.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8230 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8231 * Syntax:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8232 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8233 * math.multiply(x, y)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8234 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8235 * Examples:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8236 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8237 * math.multiply(4, 5.2); // returns number 20.8
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8238 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8239 * var a = math.complex(2, 3);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8240 * var b = math.complex(4, 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8241 * math.multiply(a, b); // returns Complex 5 + 14i
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8242 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8243 * var c = [[1, 2], [4, 3]];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8244 * var d = [[1, 2, 3], [3, -4, 7]];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8245 * math.multiply(c, d); // returns Array [[7, -6, 17], [13, -4, 33]]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8246 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8247 * var e = math.unit('2.1 km');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8248 * math.multiply(3, e); // returns Unit 6.3 km
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8249 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8250 * See also:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8251 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8252 * divide
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8253 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8254 * @param {number \| BigNumber \| Fraction \| Complex \| Unit \| Array \| Matrix} x First value to multiply
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8255 * @param {number \| BigNumber \| Fraction \| Complex \| Unit \| Array \| Matrix} y Second value to multiply
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8256 * @return {number \| BigNumber \| Fraction \| Complex \| Unit \| Array \| Matrix} Multiplication of `x` and `y`
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8257 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8258 var multiply = typed('multiply', extend({
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8259 // we extend the signatures of multiplyScalar with signatures dealing with matrices
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8260
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8261 'Array, Array': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8262 // check dimensions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8263 _validateMatrixDimensions(array.size(x), array.size(y));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8264
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8265 // use dense matrix implementation
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8266 var m = multiply(matrix(x), matrix(y));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8267 // return array or scalar
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8268 return m && m.isMatrix === true ? m.valueOf() : m;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8269 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8270
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8271 'Matrix, Matrix': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8272 // dimensions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8273 var xsize = x.size();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8274 var ysize = y.size();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8275
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8276 // check dimensions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8277 _validateMatrixDimensions(xsize, ysize);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8278
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8279 // process dimensions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8280 if (xsize.length === 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8281 // process y dimensions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8282 if (ysize.length === 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8283 // Vector * Vector
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8284 return _multiplyVectorVector(x, y, xsize[0]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8285 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8286 // Vector * Matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8287 return _multiplyVectorMatrix(x, y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8288 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8289 // process y dimensions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8290 if (ysize.length === 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8291 // Matrix * Vector
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8292 return _multiplyMatrixVector(x, y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8293 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8294 // Matrix * Matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8295 return _multiplyMatrixMatrix(x, y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8296 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8297
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8298 'Matrix, Array': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8299 // use Matrix * Matrix implementation
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8300 return multiply(x, matrix(y));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8301 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8302
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8303 'Array, Matrix': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8304 // use Matrix * Matrix implementation
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8305 return multiply(matrix(x, y.storage()), y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8306 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8307
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8308 'Matrix, any': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8309 // result
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8310 var c;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8311
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8312 // process storage format
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8313 switch (x.storage()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8314 case 'sparse':
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8315 c = algorithm11(x, y, multiplyScalar, false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8316 break;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8317 case 'dense':
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8318 c = algorithm14(x, y, multiplyScalar, false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8319 break;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8320 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8321 return c;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8322 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8323
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8324 'any, Matrix': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8325 // result
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8326 var c;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8327 // check storage format
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8328 switch (y.storage()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8329 case 'sparse':
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8330 c = algorithm11(y, x, multiplyScalar, true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8331 break;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8332 case 'dense':
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8333 c = algorithm14(y, x, multiplyScalar, true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8334 break;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8335 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8336 return c;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8337 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8338
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8339 'Array, any': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8340 // use matrix implementation
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8341 return algorithm14(matrix(x), y, multiplyScalar, false).valueOf();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8342 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8343
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8344 'any, Array': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8345 // use matrix implementation
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8346 return algorithm14(matrix(y), x, multiplyScalar, true).valueOf();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8347 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8348 }, multiplyScalar.signatures));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8349
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8350 var _validateMatrixDimensions = function (size1, size2) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8351 // check left operand dimensions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8352 switch (size1.length) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8353 case 1:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8354 // check size2
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8355 switch (size2.length) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8356 case 1:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8357 // Vector x Vector
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8358 if (size1[0] !== size2[0]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8359 // throw error
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8360 throw new RangeError('Dimension mismatch in multiplication. Vectors must have the same length');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8361 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8362 break;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8363 case 2:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8364 // Vector x Matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8365 if (size1[0] !== size2[0]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8366 // throw error
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8367 throw new RangeError('Dimension mismatch in multiplication. Vector length (' + size1[0] + ') must match Matrix rows (' + size2[0] + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8368 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8369 break;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8370 default:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8371 throw new Error('Can only multiply a 1 or 2 dimensional matrix (Matrix B has ' + size2.length + ' dimensions)');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8372 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8373 break;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8374 case 2:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8375 // check size2
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8376 switch (size2.length) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8377 case 1:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8378 // Matrix x Vector
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8379 if (size1[1] !== size2[0]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8380 // throw error
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8381 throw new RangeError('Dimension mismatch in multiplication. Matrix columns (' + size1[1] + ') must match Vector length (' + size2[0] + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8382 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8383 break;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8384 case 2:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8385 // Matrix x Matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8386 if (size1[1] !== size2[0]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8387 // throw error
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8388 throw new RangeError('Dimension mismatch in multiplication. Matrix A columns (' + size1[1] + ') must match Matrix B rows (' + size2[0] + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8389 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8390 break;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8391 default:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8392 throw new Error('Can only multiply a 1 or 2 dimensional matrix (Matrix B has ' + size2.length + ' dimensions)');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8393 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8394 break;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8395 default:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8396 throw new Error('Can only multiply a 1 or 2 dimensional matrix (Matrix A has ' + size1.length + ' dimensions)');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8397 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8398 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8399
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8400 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8401 * C = A * B
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8402 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8403 * @param {Matrix} a Dense Vector (N)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8404 * @param {Matrix} b Dense Vector (N)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8405 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8406 * @return {number} Scalar value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8407 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8408 var _multiplyVectorVector = function (a, b, n) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8409 // check empty vector
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8410 if (n === 0) throw new Error('Cannot multiply two empty vectors');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8411
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8412 // a dense
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8413 var adata = a._data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8414 var adt = a._datatype;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8415 // b dense
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8416 var bdata = b._data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8417 var bdt = b._datatype;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8418
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8419 // datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8420 var dt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8421 // addScalar signature to use
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8422 var af = addScalar;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8423 // multiplyScalar signature to use
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8424 var mf = multiplyScalar;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8425
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8426 // process data types
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8427 if (adt && bdt && adt === bdt && typeof adt === 'string') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8428 // datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8429 dt = adt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8430 // find signatures that matches (dt, dt)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8431 af = typed.find(addScalar, [dt, dt]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8432 mf = typed.find(multiplyScalar, [dt, dt]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8433 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8434
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8435 // result (do not initialize it with zero)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8436 var c = mf(adata[0], bdata[0]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8437 // loop data
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8438 for (var i = 1; i < n; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8439 // multiply and accumulate
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8440 c = af(c, mf(adata[i], bdata[i]));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8441 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8442 return c;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8443 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8444
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8445 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8446 * C = A * B
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8447 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8448 * @param {Matrix} a Dense Vector (M)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8449 * @param {Matrix} b Matrix (MxN)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8450 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8451 * @return {Matrix} Dense Vector (N)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8452 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8453 var _multiplyVectorMatrix = function (a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8454 // process storage
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8455 switch (b.storage()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8456 case 'dense':
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8457 return _multiplyVectorDenseMatrix(a, b);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8458 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8459 throw new Error('Not implemented');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8460 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8461
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8462 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8463 * C = A * B
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8464 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8465 * @param {Matrix} a Dense Vector (M)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8466 * @param {Matrix} b Dense Matrix (MxN)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8467 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8468 * @return {Matrix} Dense Vector (N)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8469 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8470 var _multiplyVectorDenseMatrix = function (a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8471 // a dense
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8472 var adata = a._data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8473 var asize = a._size;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8474 var adt = a._datatype;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8475 // b dense
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8476 var bdata = b._data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8477 var bsize = b._size;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8478 var bdt = b._datatype;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8479 // rows & columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8480 var alength = asize[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8481 var bcolumns = bsize[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8482
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8483 // datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8484 var dt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8485 // addScalar signature to use
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8486 var af = addScalar;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8487 // multiplyScalar signature to use
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8488 var mf = multiplyScalar;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8489
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8490 // process data types
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8491 if (adt && bdt && adt === bdt && typeof adt === 'string') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8492 // datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8493 dt = adt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8494 // find signatures that matches (dt, dt)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8495 af = typed.find(addScalar, [dt, dt]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8496 mf = typed.find(multiplyScalar, [dt, dt]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8497 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8498
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8499 // result
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8500 var c = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8501
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8502 // loop matrix columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8503 for (var j = 0; j < bcolumns; j++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8504 // sum (do not initialize it with zero)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8505 var sum = mf(adata[0], bdata[0][j]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8506 // loop vector
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8507 for (var i = 1; i < alength; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8508 // multiply & accumulate
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8509 sum = af(sum, mf(adata[i], bdata[i][j]));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8510 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8511 c[j] = sum;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8512 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8513
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8514 // return matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8515 return new DenseMatrix({
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8516 data: c,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8517 size: [bcolumns],
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8518 datatype: dt
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8519 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8520 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8521
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8522 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8523 * C = A * B
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8524 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8525 * @param {Matrix} a Matrix (MxN)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8526 * @param {Matrix} b Dense Vector (N)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8527 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8528 * @return {Matrix} Dense Vector (M)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8529 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8530 var _multiplyMatrixVector = function (a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8531 // process storage
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8532 switch (a.storage()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8533 case 'dense':
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8534 return _multiplyDenseMatrixVector(a, b);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8535 case 'sparse':
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8536 return _multiplySparseMatrixVector(a, b);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8537 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8538 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8539
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8540 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8541 * C = A * B
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8542 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8543 * @param {Matrix} a Matrix (MxN)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8544 * @param {Matrix} b Matrix (NxC)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8545 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8546 * @return {Matrix} Matrix (MxC)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8547 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8548 var _multiplyMatrixMatrix = function (a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8549 // process storage
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8550 switch (a.storage()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8551 case 'dense':
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8552 // process storage
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8553 switch (b.storage()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8554 case 'dense':
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8555 return _multiplyDenseMatrixDenseMatrix(a, b);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8556 case 'sparse':
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8557 return _multiplyDenseMatrixSparseMatrix(a, b);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8558 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8559 break;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8560 case 'sparse':
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8561 // process storage
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8562 switch (b.storage()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8563 case 'dense':
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8564 return _multiplySparseMatrixDenseMatrix(a, b);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8565 case 'sparse':
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8566 return _multiplySparseMatrixSparseMatrix(a, b);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8567 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8568 break;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8569 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8570 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8571
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8572 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8573 * C = A * B
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8574 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8575 * @param {Matrix} a DenseMatrix (MxN)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8576 * @param {Matrix} b Dense Vector (N)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8577 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8578 * @return {Matrix} Dense Vector (M)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8579 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8580 var _multiplyDenseMatrixVector = function (a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8581 // a dense
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8582 var adata = a._data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8583 var asize = a._size;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8584 var adt = a._datatype;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8585 // b dense
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8586 var bdata = b._data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8587 var bdt = b._datatype;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8588 // rows & columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8589 var arows = asize[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8590 var acolumns = asize[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8591
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8592 // datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8593 var dt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8594 // addScalar signature to use
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8595 var af = addScalar;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8596 // multiplyScalar signature to use
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8597 var mf = multiplyScalar;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8598
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8599 // process data types
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8600 if (adt && bdt && adt === bdt && typeof adt === 'string') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8601 // datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8602 dt = adt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8603 // find signatures that matches (dt, dt)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8604 af = typed.find(addScalar, [dt, dt]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8605 mf = typed.find(multiplyScalar, [dt, dt]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8606 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8607
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8608 // result
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8609 var c = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8610
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8611 // loop matrix a rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8612 for (var i = 0; i < arows; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8613 // current row
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8614 var row = adata[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8615 // sum (do not initialize it with zero)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8616 var sum = mf(row[0], bdata[0]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8617 // loop matrix a columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8618 for (var j = 1; j < acolumns; j++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8619 // multiply & accumulate
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8620 sum = af(sum, mf(row[j], bdata[j]));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8621 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8622 c[i] = sum;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8623 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8624
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8625 // return matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8626 return new DenseMatrix({
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8627 data: c,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8628 size: [arows],
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8629 datatype: dt
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8630 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8631 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8632
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8633 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8634 * C = A * B
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8635 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8636 * @param {Matrix} a DenseMatrix (MxN)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8637 * @param {Matrix} b DenseMatrix (NxC)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8638 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8639 * @return {Matrix} DenseMatrix (MxC)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8640 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8641 var _multiplyDenseMatrixDenseMatrix = function (a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8642 // a dense
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8643 var adata = a._data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8644 var asize = a._size;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8645 var adt = a._datatype;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8646 // b dense
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8647 var bdata = b._data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8648 var bsize = b._size;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8649 var bdt = b._datatype;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8650 // rows & columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8651 var arows = asize[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8652 var acolumns = asize[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8653 var bcolumns = bsize[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8654
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8655 // datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8656 var dt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8657 // addScalar signature to use
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8658 var af = addScalar;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8659 // multiplyScalar signature to use
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8660 var mf = multiplyScalar;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8661
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8662 // process data types
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8663 if (adt && bdt && adt === bdt && typeof adt === 'string') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8664 // datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8665 dt = adt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8666 // find signatures that matches (dt, dt)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8667 af = typed.find(addScalar, [dt, dt]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8668 mf = typed.find(multiplyScalar, [dt, dt]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8669 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8670
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8671 // result
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8672 var c = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8673
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8674 // loop matrix a rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8675 for (var i = 0; i < arows; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8676 // current row
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8677 var row = adata[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8678 // initialize row array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8679 c[i] = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8680 // loop matrix b columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8681 for (var j = 0; j < bcolumns; j++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8682 // sum (avoid initializing sum to zero)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8683 var sum = mf(row[0], bdata[0][j]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8684 // loop matrix a columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8685 for (var x = 1; x < acolumns; x++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8686 // multiply & accumulate
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8687 sum = af(sum, mf(row[x], bdata[x][j]));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8688 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8689 c[i][j] = sum;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8690 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8691 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8692
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8693 // return matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8694 return new DenseMatrix({
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8695 data: c,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8696 size: [arows, bcolumns],
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8697 datatype: dt
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8698 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8699 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8700
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8701 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8702 * C = A * B
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8703 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8704 * @param {Matrix} a DenseMatrix (MxN)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8705 * @param {Matrix} b SparseMatrix (NxC)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8706 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8707 * @return {Matrix} SparseMatrix (MxC)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8708 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8709 var _multiplyDenseMatrixSparseMatrix = function (a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8710 // a dense
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8711 var adata = a._data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8712 var asize = a._size;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8713 var adt = a._datatype;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8714 // b sparse
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8715 var bvalues = b._values;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8716 var bindex = b._index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8717 var bptr = b._ptr;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8718 var bsize = b._size;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8719 var bdt = b._datatype;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8720 // validate b matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8721 if (!bvalues) throw new Error('Cannot multiply Dense Matrix times Pattern only Matrix');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8722 // rows & columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8723 var arows = asize[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8724 var bcolumns = bsize[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8725
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8726 // datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8727 var dt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8728 // addScalar signature to use
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8729 var af = addScalar;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8730 // multiplyScalar signature to use
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8731 var mf = multiplyScalar;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8732 // equalScalar signature to use
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8733 var eq = equalScalar;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8734 // zero value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8735 var zero = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8736
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8737 // process data types
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8738 if (adt && bdt && adt === bdt && typeof adt === 'string') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8739 // datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8740 dt = adt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8741 // find signatures that matches (dt, dt)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8742 af = typed.find(addScalar, [dt, dt]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8743 mf = typed.find(multiplyScalar, [dt, dt]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8744 eq = typed.find(equalScalar, [dt, dt]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8745 // convert 0 to the same datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8746 zero = typed.convert(0, dt);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8747 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8748
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8749 // result
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8750 var cvalues = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8751 var cindex = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8752 var cptr = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8753 // c matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8754 var c = new SparseMatrix({
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8755 values: cvalues,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8756 index: cindex,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8757 ptr: cptr,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8758 size: [arows, bcolumns],
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8759 datatype: dt
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8760 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8761
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8762 // loop b columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8763 for (var jb = 0; jb < bcolumns; jb++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8764 // update ptr
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8765 cptr[jb] = cindex.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8766 // indeces in column jb
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8767 var kb0 = bptr[jb];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8768 var kb1 = bptr[jb + 1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8769 // do not process column jb if no data exists
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8770 if (kb1 > kb0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8771 // last row mark processed
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8772 var last = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8773 // loop a rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8774 for (var i = 0; i < arows; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8775 // column mark
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8776 var mark = i + 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8777 // C[i, jb]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8778 var cij;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8779 // values in b column j
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8780 for (var kb = kb0; kb < kb1; kb++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8781 // row
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8782 var ib = bindex[kb];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8783 // check value has been initialized
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8784 if (last !== mark) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8785 // first value in column jb
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8786 cij = mf(adata[i][ib], bvalues[kb]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8787 // update mark
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8788 last = mark;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8789 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8790 // accumulate value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8791 cij = af(cij, mf(adata[i][ib], bvalues[kb]));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8792 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8793 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8794 // check column has been processed and value != 0
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8795 if (last === mark && !eq(cij, zero)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8796 // push row & value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8797 cindex.push(i);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8798 cvalues.push(cij);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8799 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8800 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8801 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8802 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8803 // update ptr
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8804 cptr[bcolumns] = cindex.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8805
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8806 // return sparse matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8807 return c;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8808 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8809
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8810 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8811 * C = A * B
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8812 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8813 * @param {Matrix} a SparseMatrix (MxN)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8814 * @param {Matrix} b Dense Vector (N)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8815 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8816 * @return {Matrix} SparseMatrix (M, 1)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8817 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8818 var _multiplySparseMatrixVector = function (a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8819 // a sparse
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8820 var avalues = a._values;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8821 var aindex = a._index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8822 var aptr = a._ptr;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8823 var adt = a._datatype;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8824 // validate a matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8825 if (!avalues) throw new Error('Cannot multiply Pattern only Matrix times Dense Matrix');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8826 // b dense
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8827 var bdata = b._data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8828 var bdt = b._datatype;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8829 // rows & columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8830 var arows = a._size[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8831 var brows = b._size[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8832 // result
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8833 var cvalues = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8834 var cindex = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8835 var cptr = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8836
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8837 // datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8838 var dt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8839 // addScalar signature to use
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8840 var af = addScalar;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8841 // multiplyScalar signature to use
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8842 var mf = multiplyScalar;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8843 // equalScalar signature to use
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8844 var eq = equalScalar;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8845 // zero value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8846 var zero = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8847
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8848 // process data types
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8849 if (adt && bdt && adt === bdt && typeof adt === 'string') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8850 // datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8851 dt = adt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8852 // find signatures that matches (dt, dt)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8853 af = typed.find(addScalar, [dt, dt]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8854 mf = typed.find(multiplyScalar, [dt, dt]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8855 eq = typed.find(equalScalar, [dt, dt]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8856 // convert 0 to the same datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8857 zero = typed.convert(0, dt);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8858 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8859
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8860 // workspace
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8861 var x = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8862 // vector with marks indicating a value x[i] exists in a given column
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8863 var w = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8864
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8865 // update ptr
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8866 cptr[0] = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8867 // rows in b
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8868 for (var ib = 0; ib < brows; ib++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8869 // b[ib]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8870 var vbi = bdata[ib];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8871 // check b[ib] != 0, avoid loops
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8872 if (!eq(vbi, zero)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8873 // A values & index in ib column
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8874 for (var ka0 = aptr[ib], ka1 = aptr[ib + 1], ka = ka0; ka < ka1; ka++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8875 // a row
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8876 var ia = aindex[ka];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8877 // check value exists in current j
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8878 if (!w[ia]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8879 // ia is new entry in j
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8880 w[ia] = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8881 // add i to pattern of C
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8882 cindex.push(ia);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8883 // x(ia) = A
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8884 x[ia] = mf(vbi, avalues[ka]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8885 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8886 // i exists in C already
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8887 x[ia] = af(x[ia], mf(vbi, avalues[ka]));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8888 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8889 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8890 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8891 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8892 // copy values from x to column jb of c
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8893 for (var p1 = cindex.length, p = 0; p < p1; p++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8894 // row
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8895 var ic = cindex[p];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8896 // copy value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8897 cvalues[p] = x[ic];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8898 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8899 // update ptr
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8900 cptr[1] = cindex.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8901
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8902 // return sparse matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8903 return new SparseMatrix({
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8904 values: cvalues,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8905 index: cindex,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8906 ptr: cptr,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8907 size: [arows, 1],
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8908 datatype: dt
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8909 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8910 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8911
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8912 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8913 * C = A * B
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8914 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8915 * @param {Matrix} a SparseMatrix (MxN)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8916 * @param {Matrix} b DenseMatrix (NxC)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8917 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8918 * @return {Matrix} SparseMatrix (MxC)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8919 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8920 var _multiplySparseMatrixDenseMatrix = function (a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8921 // a sparse
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8922 var avalues = a._values;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8923 var aindex = a._index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8924 var aptr = a._ptr;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8925 var adt = a._datatype;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8926 // validate a matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8927 if (!avalues) throw new Error('Cannot multiply Pattern only Matrix times Dense Matrix');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8928 // b dense
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8929 var bdata = b._data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8930 var bdt = b._datatype;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8931 // rows & columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8932 var arows = a._size[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8933 var brows = b._size[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8934 var bcolumns = b._size[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8935
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8936 // datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8937 var dt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8938 // addScalar signature to use
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8939 var af = addScalar;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8940 // multiplyScalar signature to use
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8941 var mf = multiplyScalar;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8942 // equalScalar signature to use
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8943 var eq = equalScalar;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8944 // zero value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8945 var zero = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8946
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8947 // process data types
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8948 if (adt && bdt && adt === bdt && typeof adt === 'string') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8949 // datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8950 dt = adt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8951 // find signatures that matches (dt, dt)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8952 af = typed.find(addScalar, [dt, dt]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8953 mf = typed.find(multiplyScalar, [dt, dt]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8954 eq = typed.find(equalScalar, [dt, dt]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8955 // convert 0 to the same datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8956 zero = typed.convert(0, dt);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8957 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8958
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8959 // result
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8960 var cvalues = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8961 var cindex = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8962 var cptr = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8963 // c matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8964 var c = new SparseMatrix({
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8965 values: cvalues,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8966 index: cindex,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8967 ptr: cptr,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8968 size: [arows, bcolumns],
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8969 datatype: dt
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8970 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8971
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8972 // workspace
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8973 var x = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8974 // vector with marks indicating a value x[i] exists in a given column
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8975 var w = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8976
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8977 // loop b columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8978 for (var jb = 0; jb < bcolumns; jb++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8979 // update ptr
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8980 cptr[jb] = cindex.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8981 // mark in workspace for current column
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8982 var mark = jb + 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8983 // rows in jb
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8984 for (var ib = 0; ib < brows; ib++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8985 // b[ib, jb]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8986 var vbij = bdata[ib][jb];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8987 // check b[ib, jb] != 0, avoid loops
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8988 if (!eq(vbij, zero)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8989 // A values & index in ib column
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8990 for (var ka0 = aptr[ib], ka1 = aptr[ib + 1], ka = ka0; ka < ka1; ka++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8991 // a row
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8992 var ia = aindex[ka];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8993 // check value exists in current j
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8994 if (w[ia] !== mark) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8995 // ia is new entry in j
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8996 w[ia] = mark;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8997 // add i to pattern of C
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8998 cindex.push(ia);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	8999 // x(ia) = A
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9000 x[ia] = mf(vbij, avalues[ka]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9001 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9002 // i exists in C already
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9003 x[ia] = af(x[ia], mf(vbij, avalues[ka]));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9004 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9005 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9006 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9007 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9008 // copy values from x to column jb of c
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9009 for (var p0 = cptr[jb], p1 = cindex.length, p = p0; p < p1; p++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9010 // row
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9011 var ic = cindex[p];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9012 // copy value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9013 cvalues[p] = x[ic];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9014 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9015 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9016 // update ptr
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9017 cptr[bcolumns] = cindex.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9018
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9019 // return sparse matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9020 return c;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9021 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9022
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9023 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9024 * C = A * B
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9025 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9026 * @param {Matrix} a SparseMatrix (MxN)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9027 * @param {Matrix} b SparseMatrix (NxC)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9028 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9029 * @return {Matrix} SparseMatrix (MxC)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9030 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9031 var _multiplySparseMatrixSparseMatrix = function (a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9032 // a sparse
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9033 var avalues = a._values;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9034 var aindex = a._index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9035 var aptr = a._ptr;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9036 var adt = a._datatype;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9037 // b sparse
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9038 var bvalues = b._values;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9039 var bindex = b._index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9040 var bptr = b._ptr;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9041 var bdt = b._datatype;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9042
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9043 // rows & columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9044 var arows = a._size[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9045 var bcolumns = b._size[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9046 // flag indicating both matrices (a & b) contain data
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9047 var values = avalues && bvalues;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9048
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9049 // datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9050 var dt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9051 // addScalar signature to use
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9052 var af = addScalar;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9053 // multiplyScalar signature to use
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9054 var mf = multiplyScalar;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9055
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9056 // process data types
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9057 if (adt && bdt && adt === bdt && typeof adt === 'string') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9058 // datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9059 dt = adt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9060 // find signatures that matches (dt, dt)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9061 af = typed.find(addScalar, [dt, dt]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9062 mf = typed.find(multiplyScalar, [dt, dt]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9063 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9064
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9065 // result
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9066 var cvalues = values ? [] : undefined;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9067 var cindex = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9068 var cptr = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9069 // c matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9070 var c = new SparseMatrix({
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9071 values: cvalues,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9072 index: cindex,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9073 ptr: cptr,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9074 size: [arows, bcolumns],
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9075 datatype: dt
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9076 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9077
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9078 // workspace
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9079 var x = values ? [] : undefined;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9080 // vector with marks indicating a value x[i] exists in a given column
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9081 var w = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9082 // variables
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9083 var ka, ka0, ka1, kb, kb0, kb1, ia, ib;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9084 // loop b columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9085 for (var jb = 0; jb < bcolumns; jb++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9086 // update ptr
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9087 cptr[jb] = cindex.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9088 // mark in workspace for current column
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9089 var mark = jb + 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9090 // B values & index in j
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9091 for (kb0 = bptr[jb], kb1 = bptr[jb + 1], kb = kb0; kb < kb1; kb++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9092 // b row
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9093 ib = bindex[kb];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9094 // check we need to process values
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9095 if (values) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9096 // loop values in a[:,ib]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9097 for (ka0 = aptr[ib], ka1 = aptr[ib + 1], ka = ka0; ka < ka1; ka++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9098 // row
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9099 ia = aindex[ka];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9100 // check value exists in current j
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9101 if (w[ia] !== mark) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9102 // ia is new entry in j
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9103 w[ia] = mark;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9104 // add i to pattern of C
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9105 cindex.push(ia);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9106 // x(ia) = A
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9107 x[ia] = mf(bvalues[kb], avalues[ka]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9108 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9109 // i exists in C already
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9110 x[ia] = af(x[ia], mf(bvalues[kb], avalues[ka]));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9111 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9112 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9113 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9114 // loop values in a[:,ib]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9115 for (ka0 = aptr[ib], ka1 = aptr[ib + 1], ka = ka0; ka < ka1; ka++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9116 // row
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9117 ia = aindex[ka];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9118 // check value exists in current j
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9119 if (w[ia] !== mark) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9120 // ia is new entry in j
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9121 w[ia] = mark;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9122 // add i to pattern of C
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9123 cindex.push(ia);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9124 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9125 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9126 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9127 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9128 // check we need to process matrix values (pattern matrix)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9129 if (values) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9130 // copy values from x to column jb of c
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9131 for (var p0 = cptr[jb], p1 = cindex.length, p = p0; p < p1; p++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9132 // row
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9133 var ic = cindex[p];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9134 // copy value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9135 cvalues[p] = x[ic];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9136 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9137 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9138 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9139 // update ptr
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9140 cptr[bcolumns] = cindex.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9141
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9142 // return sparse matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9143 return c;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9144 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9145
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9146 multiply.toTex = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9147 2: '\\left(${args[0]}' + latex.operators['multiply'] + '${args[1]}\\right)'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9148 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9149
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9150 return multiply;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9151 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9152
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9153 exports.name = 'multiply';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9154 exports.factory = factory;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9155
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9156 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9157 /* 83 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9158 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9159
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9160 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9161
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9162 var number = __webpack_require__(72);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9163 var string = __webpack_require__(84);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9164 var object = __webpack_require__(69);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9165 var types = __webpack_require__(86);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9166
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9167 var DimensionError = __webpack_require__(87);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9168 var IndexError = __webpack_require__(88);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9169
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9170 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9171 * Calculate the size of a multi dimensional array.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9172 * This function checks the size of the first entry, it does not validate
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9173 * whether all dimensions match. (use function `validate` for that)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9174 * @param {Array} x
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9175 * @Return {Number[]} size
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9176 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9177 exports.size = function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9178 var s = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9179
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9180 while (Array.isArray(x)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9181 s.push(x.length);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9182 x = x[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9183 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9184
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9185 return s;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9186 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9187
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9188 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9189 * Recursively validate whether each element in a multi dimensional array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9190 * has a size corresponding to the provided size array.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9191 * @param {Array} array Array to be validated
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9192 * @param {number[]} size Array with the size of each dimension
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9193 * @param {number} dim Current dimension
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9194 * @throws DimensionError
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9195 * @private
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9196 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9197 function _validate(array, size, dim) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9198 var i;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9199 var len = array.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9200
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9201 if (len != size[dim]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9202 throw new DimensionError(len, size[dim]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9203 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9204
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9205 if (dim < size.length - 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9206 // recursively validate each child array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9207 var dimNext = dim + 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9208 for (i = 0; i < len; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9209 var child = array[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9210 if (!Array.isArray(child)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9211 throw new DimensionError(size.length - 1, size.length, '<');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9212 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9213 _validate(array[i], size, dimNext);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9214 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9215 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9216 // last dimension. none of the childs may be an array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9217 for (i = 0; i < len; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9218 if (Array.isArray(array[i])) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9219 throw new DimensionError(size.length + 1, size.length, '>');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9220 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9221 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9222 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9223 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9224
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9225 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9226 * Validate whether each element in a multi dimensional array has
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9227 * a size corresponding to the provided size array.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9228 * @param {Array} array Array to be validated
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9229 * @param {number[]} size Array with the size of each dimension
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9230 * @throws DimensionError
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9231 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9232 exports.validate = function (array, size) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9233 var isScalar = size.length == 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9234 if (isScalar) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9235 // scalar
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9236 if (Array.isArray(array)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9237 throw new DimensionError(array.length, 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9238 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9239 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9240 // array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9241 _validate(array, size, 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9242 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9243 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9244
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9245 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9246 * Test whether index is an integer number with index >= 0 and index < length
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9247 * when length is provided
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9248 * @param {number} index Zero-based index
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9249 * @param {number} [length] Length of the array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9250 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9251 exports.validateIndex = function (index, length) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9252 if (!number.isNumber(index) \|\| !number.isInteger(index)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9253 throw new TypeError('Index must be an integer (value: ' + index + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9254 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9255 if (index < 0 \|\| typeof length === 'number' && index >= length) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9256 throw new IndexError(index, length);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9257 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9258 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9259
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9260 // a constant used to specify an undefined defaultValue
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9261 exports.UNINITIALIZED = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9262
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9263 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9264 * Resize a multi dimensional array. The resized array is returned.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9265 * @param {Array} array Array to be resized
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9266 * @param {Array.<number>} size Array with the size of each dimension
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9267 * @param {*} [defaultValue=0] Value to be filled in in new entries,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9268 * zero by default. To leave new entries undefined,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9269 * specify array.UNINITIALIZED as defaultValue
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9270 * @return {Array} array The resized array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9271 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9272 exports.resize = function (array, size, defaultValue) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9273 // TODO: add support for scalars, having size=[] ?
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9274
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9275 // check the type of the arguments
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9276 if (!Array.isArray(array) \|\| !Array.isArray(size)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9277 throw new TypeError('Array expected');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9278 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9279 if (size.length === 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9280 throw new Error('Resizing to scalar is not supported');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9281 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9282
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9283 // check whether size contains positive integers
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9284 size.forEach(function (value) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9285 if (!number.isNumber(value) \|\| !number.isInteger(value) \|\| value < 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9286 throw new TypeError('Invalid size, must contain positive integers ' + '(size: ' + string.format(size) + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9287 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9288 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9289
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9290 // recursively resize the array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9291 var _defaultValue = defaultValue !== undefined ? defaultValue : 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9292 _resize(array, size, 0, _defaultValue);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9293
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9294 return array;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9295 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9296
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9297 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9298 * Recursively resize a multi dimensional array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9299 * @param {Array} array Array to be resized
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9300 * @param {number[]} size Array with the size of each dimension
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9301 * @param {number} dim Current dimension
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9302 * @param {*} [defaultValue] Value to be filled in in new entries,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9303 * undefined by default.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9304 * @private
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9305 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9306 function _resize(array, size, dim, defaultValue) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9307 var i;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9308 var elem;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9309 var oldLen = array.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9310 var newLen = size[dim];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9311 var minLen = Math.min(oldLen, newLen);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9312
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9313 // apply new length
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9314 array.length = newLen;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9315
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9316 if (dim < size.length - 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9317 // non-last dimension
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9318 var dimNext = dim + 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9319
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9320 // resize existing child arrays
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9321 for (i = 0; i < minLen; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9322 // resize child array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9323 elem = array[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9324 if (!Array.isArray(elem)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9325 elem = [elem]; // add a dimension
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9326 array[i] = elem;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9327 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9328 _resize(elem, size, dimNext, defaultValue);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9329 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9330
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9331 // create new child arrays
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9332 for (i = minLen; i < newLen; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9333 // get child array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9334 elem = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9335 array[i] = elem;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9336
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9337 // resize new child array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9338 _resize(elem, size, dimNext, defaultValue);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9339 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9340 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9341 // last dimension
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9342
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9343 // remove dimensions of existing values
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9344 for (i = 0; i < minLen; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9345 while (Array.isArray(array[i])) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9346 array[i] = array[i][0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9347 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9348 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9349
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9350 if (defaultValue !== exports.UNINITIALIZED) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9351 // fill new elements with the default value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9352 for (i = minLen; i < newLen; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9353 array[i] = defaultValue;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9354 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9355 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9356 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9357 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9358
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9359 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9360 * Squeeze a multi dimensional array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9361 * @param {Array} array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9362 * @param {Array} [size]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9363 * @returns {Array} returns the array itself
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9364 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9365 exports.squeeze = function (array, size) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9366 var s = size \|\| exports.size(array);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9367
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9368 // squeeze outer dimensions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9369 while (Array.isArray(array) && array.length === 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9370 array = array[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9371 s.shift();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9372 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9373
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9374 // find the first dimension to be squeezed
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9375 var dims = s.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9376 while (s[dims - 1] === 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9377 dims--;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9378 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9379
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9380 // squeeze inner dimensions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9381 if (dims < s.length) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9382 array = _squeeze(array, dims, 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9383 s.length = dims;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9384 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9385
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9386 return array;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9387 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9388
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9389 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9390 * Recursively squeeze a multi dimensional array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9391 * @param {Array} array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9392 * @param {number} dims Required number of dimensions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9393 * @param {number} dim Current dimension
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9394 * @returns {Array \| *} Returns the squeezed array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9395 * @private
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9396 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9397 function _squeeze(array, dims, dim) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9398 var i, ii;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9399
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9400 if (dim < dims) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9401 var next = dim + 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9402 for (i = 0, ii = array.length; i < ii; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9403 array[i] = _squeeze(array[i], dims, next);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9404 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9405 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9406 while (Array.isArray(array)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9407 array = array[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9408 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9409 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9410
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9411 return array;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9412 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9413
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9414 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9415 * Unsqueeze a multi dimensional array: add dimensions when missing
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9416 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9417 * Paramter `size` will be mutated to match the new, unqueezed matrix size.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9418 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9419 * @param {Array} array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9420 * @param {number} dims Desired number of dimensions of the array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9421 * @param {number} [outer] Number of outer dimensions to be added
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9422 * @param {Array} [size] Current size of array.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9423 * @returns {Array} returns the array itself
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9424 * @private
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9425 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9426 exports.unsqueeze = function (array, dims, outer, size) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9427 var s = size \|\| exports.size(array);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9428
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9429 // unsqueeze outer dimensions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9430 if (outer) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9431 for (var i = 0; i < outer; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9432 array = [array];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9433 s.unshift(1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9434 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9435 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9436
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9437 // unsqueeze inner dimensions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9438 array = _unsqueeze(array, dims, 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9439 while (s.length < dims) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9440 s.push(1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9441 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9442
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9443 return array;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9444 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9445
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9446 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9447 * Recursively unsqueeze a multi dimensional array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9448 * @param {Array} array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9449 * @param {number} dims Required number of dimensions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9450 * @param {number} dim Current dimension
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9451 * @returns {Array \| *} Returns the squeezed array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9452 * @private
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9453 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9454 function _unsqueeze(array, dims, dim) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9455 var i, ii;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9456
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9457 if (Array.isArray(array)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9458 var next = dim + 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9459 for (i = 0, ii = array.length; i < ii; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9460 array[i] = _unsqueeze(array[i], dims, next);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9461 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9462 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9463 for (var d = dim; d < dims; d++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9464 array = [array];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9465 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9466 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9467
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9468 return array;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9469 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9470 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9471 * Flatten a multi dimensional array, put all elements in a one dimensional
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9472 * array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9473 * @param {Array} array A multi dimensional array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9474 * @return {Array} The flattened array (1 dimensional)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9475 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9476 exports.flatten = function (array) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9477 if (!Array.isArray(array)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9478 //if not an array, return as is
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9479 return array;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9480 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9481 var flat = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9482
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9483 array.forEach(function callback(value) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9484 if (Array.isArray(value)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9485 value.forEach(callback); //traverse through sub-arrays recursively
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9486 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9487 flat.push(value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9488 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9489 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9490
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9491 return flat;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9492 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9493
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9494 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9495 * Test whether an object is an array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9496 * @param {*} value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9497 * @return {boolean} isArray
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9498 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9499 exports.isArray = Array.isArray;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9500
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9501 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9502 /* 84 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9503 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9504
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9505 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9506
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9507 var formatNumber = __webpack_require__(72).format;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9508 var formatBigNumber = __webpack_require__(85).format;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9509
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9510 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9511 * Test whether value is a string
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9512 * @param {*} value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9513 * @return {boolean} isString
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9514 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9515 exports.isString = function (value) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9516 return typeof value === 'string';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9517 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9518
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9519 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9520 * Check if a text ends with a certain string.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9521 * @param {string} text
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9522 * @param {string} search
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9523 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9524 exports.endsWith = function (text, search) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9525 var start = text.length - search.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9526 var end = text.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9527 return text.substring(start, end) === search;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9528 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9529
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9530 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9531 * Format a value of any type into a string.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9532 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9533 * Usage:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9534 * math.format(value)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9535 * math.format(value, precision)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9536 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9537 * When value is a function:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9538 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9539 * - When the function has a property `syntax`, it returns this
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9540 * syntax description.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9541 * - In other cases, a string `'function'` is returned.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9542 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9543 * When `value` is an Object:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9544 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9545 * - When the object contains a property `format` being a function, this
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9546 * function is invoked as `value.format(options)` and the result is returned.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9547 * - When the object has its own `toString` method, this method is invoked
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9548 * and the result is returned.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9549 * - In other cases the function will loop over all object properties and
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9550 * return JSON object notation like '{"a": 2, "b": 3}'.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9551 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9552 * Example usage:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9553 * math.format(2/7); // '0.2857142857142857'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9554 * math.format(math.pi, 3); // '3.14'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9555 * math.format(new Complex(2, 3)); // '2 + 3i'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9556 * math.format('hello'); // '"hello"'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9557 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9558 * @param {*} value Value to be stringified
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9559 * @param {Object \| number \| Function} [options] Formatting options. See
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9560 * lib/utils/number:format for a
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9561 * description of the available
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9562 * options.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9563 * @return {string} str
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9564 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9565 exports.format = function (value, options) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9566 if (typeof value === 'number') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9567 return formatNumber(value, options);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9568 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9569
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9570 if (value && value.isBigNumber === true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9571 return formatBigNumber(value, options);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9572 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9573
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9574 if (value && value.isFraction === true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9575 if (!options \|\| options.fraction !== 'decimal') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9576 // output as ratio, like '1/3'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9577 return value.s * value.n + '/' + value.d;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9578 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9579 // output as decimal, like '0.(3)'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9580 return value.toString();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9581 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9582 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9583
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9584 if (Array.isArray(value)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9585 return formatArray(value, options);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9586 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9587
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9588 if (exports.isString(value)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9589 return '"' + value + '"';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9590 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9591
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9592 if (typeof value === 'function') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9593 return value.syntax ? String(value.syntax) : 'function';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9594 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9595
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9596 if (value && typeof value === 'object') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9597 if (typeof value.format === 'function') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9598 return value.format(options);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9599 } else if (value && value.toString() !== {}.toString()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9600 // this object has a non-native toString method, use that one
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9601 return value.toString();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9602 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9603 var entries = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9604
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9605 for (var key in value) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9606 if (value.hasOwnProperty(key)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9607 entries.push('"' + key + '": ' + exports.format(value[key], options));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9608 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9609 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9610
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9611 return '{' + entries.join(', ') + '}';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9612 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9613 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9614
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9615 return String(value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9616 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9617
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9618 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9619 * Recursively format an n-dimensional matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9620 * Example output: "[[1, 2], [3, 4]]"
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9621 * @param {Array} array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9622 * @param {Object \| number \| Function} [options] Formatting options. See
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9623 * lib/utils/number:format for a
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9624 * description of the available
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9625 * options.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9626 * @returns {string} str
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9627 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9628 function formatArray(array, options) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9629 if (Array.isArray(array)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9630 var str = '[';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9631 var len = array.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9632 for (var i = 0; i < len; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9633 if (i != 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9634 str += ', ';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9635 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9636 str += formatArray(array[i], options);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9637 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9638 str += ']';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9639 return str;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9640 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9641 return exports.format(array, options);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9642 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9643 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9644
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9645 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9646 /* 85 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9647 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9648
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9649 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9650 * Convert a BigNumber to a formatted string representation.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9651 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9652 * Syntax:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9653 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9654 * format(value)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9655 * format(value, options)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9656 * format(value, precision)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9657 * format(value, fn)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9658 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9659 * Where:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9660 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9661 * {number} value The value to be formatted
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9662 * {Object} options An object with formatting options. Available options:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9663 * {string} notation
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9664 * Number notation. Choose from:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9665 * 'fixed' Always use regular number notation.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9666 * For example '123.40' and '14000000'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9667 * 'exponential' Always use exponential notation.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9668 * For example '1.234e+2' and '1.4e+7'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9669 * 'auto' (default) Regular number notation for numbers
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9670 * having an absolute value between
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9671 * `lower` and `upper` bounds, and uses
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9672 * exponential notation elsewhere.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9673 * Lower bound is included, upper bound
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9674 * is excluded.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9675 * For example '123.4' and '1.4e7'.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9676 * {number} precision A number between 0 and 16 to round
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9677 * the digits of the number.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9678 * In case of notations 'exponential' and
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9679 * 'auto', `precision` defines the total
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9680 * number of significant digits returned
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9681 * and is undefined by default.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9682 * In case of notation 'fixed',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9683 * `precision` defines the number of
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9684 * significant digits after the decimal
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9685 * point, and is 0 by default.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9686 * {Object} exponential An object containing two parameters,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9687 * {number} lower and {number} upper,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9688 * used by notation 'auto' to determine
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9689 * when to return exponential notation.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9690 * Default values are `lower=1e-3` and
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9691 * `upper=1e5`.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9692 * Only applicable for notation `auto`.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9693 * {Function} fn A custom formatting function. Can be used to override the
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9694 * built-in notations. Function `fn` is called with `value` as
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9695 * parameter and must return a string. Is useful for example to
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9696 * format all values inside a matrix in a particular way.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9697 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9698 * Examples:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9699 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9700 * format(6.4); // '6.4'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9701 * format(1240000); // '1.24e6'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9702 * format(1/3); // '0.3333333333333333'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9703 * format(1/3, 3); // '0.333'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9704 * format(21385, 2); // '21000'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9705 * format(12.071, {notation: 'fixed'}); // '12'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9706 * format(2.3, {notation: 'fixed', precision: 2}); // '2.30'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9707 * format(52.8, {notation: 'exponential'}); // '5.28e+1'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9708 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9709 * @param {BigNumber} value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9710 * @param {Object \| Function \| number} [options]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9711 * @return {string} str The formatted value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9712 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9713 exports.format = function (value, options) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9714 if (typeof options === 'function') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9715 // handle format(value, fn)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9716 return options(value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9717 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9718
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9719 // handle special cases
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9720 if (!value.isFinite()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9721 return value.isNaN() ? 'NaN' : value.gt(0) ? 'Infinity' : '-Infinity';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9722 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9723
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9724 // default values for options
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9725 var notation = 'auto';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9726 var precision = undefined;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9727
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9728 if (options !== undefined) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9729 // determine notation from options
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9730 if (options.notation) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9731 notation = options.notation;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9732 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9733
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9734 // determine precision from options
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9735 if (typeof options === 'number') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9736 precision = options;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9737 } else if (options.precision) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9738 precision = options.precision;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9739 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9740 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9741
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9742 // handle the various notations
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9743 switch (notation) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9744 case 'fixed':
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9745 return exports.toFixed(value, precision);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9746
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9747 case 'exponential':
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9748 return exports.toExponential(value, precision);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9749
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9750 case 'auto':
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9751 // determine lower and upper bound for exponential notation.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9752 // TODO: implement support for upper and lower to be BigNumbers themselves
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9753 var lower = 1e-3;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9754 var upper = 1e5;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9755 if (options && options.exponential) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9756 if (options.exponential.lower !== undefined) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9757 lower = options.exponential.lower;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9758 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9759 if (options.exponential.upper !== undefined) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9760 upper = options.exponential.upper;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9761 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9762 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9763
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9764 // adjust the configuration of the BigNumber constructor (yeah, this is quite tricky...)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9765 var oldConfig = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9766 toExpNeg: value.constructor.toExpNeg,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9767 toExpPos: value.constructor.toExpPos
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9768 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9769
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9770 value.constructor.config({
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9771 toExpNeg: Math.round(Math.log(lower) / Math.LN10),
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9772 toExpPos: Math.round(Math.log(upper) / Math.LN10)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9773 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9774
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9775 // handle special case zero
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9776 if (value.isZero()) return '0';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9777
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9778 // determine whether or not to output exponential notation
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9779 var str;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9780 var abs = value.abs();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9781 if (abs.gte(lower) && abs.lt(upper)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9782 // normal number notation
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9783 str = value.toSignificantDigits(precision).toFixed();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9784 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9785 // exponential notation
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9786 str = exports.toExponential(value, precision);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9787 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9788
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9789 // remove trailing zeros after the decimal point
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9790 return str.replace(/((\.\d*?)(0+))($\|e)/, function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9791 var digits = arguments[2];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9792 var e = arguments[4];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9793 return digits !== '.' ? digits + e : e;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9794 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9795
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9796 default:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9797 throw new Error('Unknown notation "' + notation + '". ' + 'Choose "auto", "exponential", or "fixed".');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9798 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9799 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9800
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9801 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9802 * Format a number in exponential notation. Like '1.23e+5', '2.3e+0', '3.500e-3'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9803 * @param {BigNumber} value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9804 * @param {number} [precision] Number of digits in formatted output.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9805 * If not provided, the maximum available digits
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9806 * is used.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9807 * @returns {string} str
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9808 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9809 exports.toExponential = function (value, precision) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9810 if (precision !== undefined) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9811 return value.toExponential(precision - 1); // Note the offset of one
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9812 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9813 return value.toExponential();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9814 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9815 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9816
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9817 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9818 * Format a number with fixed notation.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9819 * @param {BigNumber} value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9820 * @param {number} [precision=0] Optional number of decimals after the
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9821 * decimal point. Zero by default.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9822 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9823 exports.toFixed = function (value, precision) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9824 return value.toFixed(precision \|\| 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9825 // Note: the (precision \|\| 0) is needed as the toFixed of BigNumber has an
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9826 // undefined default precision instead of 0.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9827 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9828
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9829 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9830 /* 86 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9831 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9832
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9833 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9834
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9835 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9836 * Determine the type of a variable
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9837 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9838 * type(x)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9839 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9840 * The following types are recognized:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9841 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9842 * 'undefined'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9843 * 'null'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9844 * 'boolean'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9845 * 'number'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9846 * 'string'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9847 * 'Array'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9848 * 'Function'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9849 * 'Date'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9850 * 'RegExp'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9851 * 'Object'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9852 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9853 * @param {*} x
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9854 * @return {string} Returns the name of the type. Primitive types are lower case,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9855 * non-primitive types are upper-camel-case.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9856 * For example 'number', 'string', 'Array', 'Date'.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9857 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9858
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9859 exports.type = function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9860 var type = typeof x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9861
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9862 if (type === 'object') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9863 if (x === null) return 'null';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9864 if (x instanceof Boolean) return 'boolean';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9865 if (x instanceof Number) return 'number';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9866 if (x instanceof String) return 'string';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9867 if (Array.isArray(x)) return 'Array';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9868 if (x instanceof Date) return 'Date';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9869 if (x instanceof RegExp) return 'RegExp';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9870
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9871 return 'Object';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9872 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9873
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9874 if (type === 'function') return 'Function';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9875
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9876 return type;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9877 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9878
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9879 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9880 * Test whether a value is a scalar
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9881 * @param x
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9882 * @return {boolean} Returns true when x is a scalar, returns false when
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9883 * x is a Matrix or Array.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9884 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9885 exports.isScalar = function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9886 return !(x && x.isMatrix \|\| Array.isArray(x));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9887 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9888
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9889 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9890 /* 87 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9891 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9892
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9893 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9894
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9895 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9896 * Create a range error with the message:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9897 * 'Dimension mismatch (<actual size> != <expected size>)'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9898 * @param {number \| number[]} actual The actual size
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9899 * @param {number \| number[]} expected The expected size
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9900 * @param {string} [relation='!='] Optional relation between actual
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9901 * and expected size: '!=', '<', etc.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9902 * @extends RangeError
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9903 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9904
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9905 function DimensionError(actual, expected, relation) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9906 if (!(this instanceof DimensionError)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9907 throw new SyntaxError('Constructor must be called with the new operator');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9908 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9909
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9910 this.actual = actual;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9911 this.expected = expected;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9912 this.relation = relation;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9913
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9914 this.message = 'Dimension mismatch (' + (Array.isArray(actual) ? '[' + actual.join(', ') + ']' : actual) + ' ' + (this.relation \|\| '!=') + ' ' + (Array.isArray(expected) ? '[' + expected.join(', ') + ']' : expected) + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9915
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9916 this.stack = new Error().stack;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9917 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9918
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9919 DimensionError.prototype = new RangeError();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9920 DimensionError.prototype.constructor = RangeError;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9921 DimensionError.prototype.name = 'DimensionError';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9922 DimensionError.prototype.isDimensionError = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9923
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9924 module.exports = DimensionError;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9925
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9926 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9927 /* 88 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9928 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9929
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9930 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9931
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9932 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9933 * Create a range error with the message:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9934 * 'Index out of range (index < min)'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9935 * 'Index out of range (index < max)'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9936 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9937 * @param {number} index The actual index
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9938 * @param {number} [min=0] Minimum index (included)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9939 * @param {number} [max] Maximum index (excluded)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9940 * @extends RangeError
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9941 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9942
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9943 function IndexError(index, min, max) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9944 if (!(this instanceof IndexError)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9945 throw new SyntaxError('Constructor must be called with the new operator');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9946 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9947
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9948 this.index = index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9949 if (arguments.length < 3) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9950 this.min = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9951 this.max = min;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9952 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9953 this.min = min;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9954 this.max = max;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9955 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9956
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9957 if (this.min !== undefined && this.index < this.min) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9958 this.message = 'Index out of range (' + this.index + ' < ' + this.min + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9959 } else if (this.max !== undefined && this.index >= this.max) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9960 this.message = 'Index out of range (' + this.index + ' > ' + (this.max - 1) + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9961 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9962 this.message = 'Index out of range (' + this.index + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9963 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9964
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9965 this.stack = new Error().stack;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9966 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9967
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9968 IndexError.prototype = new RangeError();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9969 IndexError.prototype.constructor = RangeError;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9970 IndexError.prototype.name = 'IndexError';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9971 IndexError.prototype.isIndexError = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9972
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9973 module.exports = IndexError;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9974
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9975 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9976 /* 89 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9977 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9978
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9979 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9980
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9981 exports.symbols = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9982 // GREEK LETTERS
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9983 Alpha: 'A', alpha: '\\alpha',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9984 Beta: 'B', beta: '\\beta',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9985 Gamma: '\\Gamma', gamma: '\\gamma',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9986 Delta: '\\Delta', delta: '\\delta',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9987 Epsilon: 'E', epsilon: '\\epsilon', varepsilon: '\\varepsilon',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9988 Zeta: 'Z', zeta: '\\zeta',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9989 Eta: 'H', eta: '\\eta',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9990 Theta: '\\Theta', theta: '\\theta', vartheta: '\\vartheta',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9991 Iota: 'I', iota: '\\iota',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9992 Kappa: 'K', kappa: '\\kappa', varkappa: '\\varkappa',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9993 Lambda: '\\Lambda', lambda: '\\lambda',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9994 Mu: 'M', mu: '\\mu',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9995 Nu: 'N', nu: '\\nu',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9996 Xi: '\\Xi', xi: '\\xi',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9997 Omicron: 'O', omicron: 'o',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9998 Pi: '\\Pi', pi: '\\pi', varpi: '\\varpi',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	9999 Rho: 'P', rho: '\\rho', varrho: '\\varrho',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10000 Sigma: '\\Sigma', sigma: '\\sigma', varsigma: '\\varsigma',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10001 Tau: 'T', tau: '\\tau',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10002 Upsilon: '\\Upsilon', upsilon: '\\upsilon',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10003 Phi: '\\Phi', phi: '\\phi', varphi: '\\varphi',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10004 Chi: 'X', chi: '\\chi',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10005 Psi: '\\Psi', psi: '\\psi',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10006 Omega: '\\Omega', omega: '\\omega',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10007 //logic
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10008 'true': '\\mathrm{True}',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10009 'false': '\\mathrm{False}',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10010 //other
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10011 i: 'i', //TODO use \i ??
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10012 inf: '\\infty',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10013 Inf: '\\infty',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10014 infinity: '\\infty',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10015 Infinity: '\\infty',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10016 oo: '\\infty',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10017 lim: '\\lim',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10018 'undefined': '\\mathbf{?}'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10019 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10020
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10021 exports.operators = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10022 'transpose': '^\\top',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10023 'factorial': '!',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10024 'pow': '^',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10025 'dotPow': '.^\\wedge', //TODO find ideal solution
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10026 'unaryPlus': '+',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10027 'unaryMinus': '-',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10028 'bitNot': '~', //TODO find ideal solution
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10029 'not': '\\neg',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10030 'multiply': '\\cdot',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10031 'divide': '\\frac', //TODO how to handle that properly?
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10032 'dotMultiply': '.\\cdot', //TODO find ideal solution
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10033 'dotDivide': '.:', //TODO find ideal solution
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10034 'mod': '\\mod',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10035 'add': '+',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10036 'subtract': '-',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10037 'to': '\\rightarrow',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10038 'leftShift': '<<',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10039 'rightArithShift': '>>',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10040 'rightLogShift': '>>>',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10041 'equal': '=',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10042 'unequal': '\\neq',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10043 'smaller': '<',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10044 'larger': '>',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10045 'smallerEq': '\\leq',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10046 'largerEq': '\\geq',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10047 'bitAnd': '\\&',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10048 'bitXor': '\\underline{\|}',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10049 'bitOr': '\|',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10050 'and': '\\wedge',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10051 'xor': '\\veebar',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10052 'or': '\\vee'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10053 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10054
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10055 exports.defaultTemplate = '\\mathrm{${name}}\\left(${args}\\right)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10056
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10057 var units = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10058 deg: '^\\circ'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10059 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10060
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10061 //@param {string} name
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10062 //@param {boolean} isUnit
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10063 exports.toSymbol = function (name, isUnit) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10064 isUnit = typeof isUnit === 'undefined' ? false : isUnit;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10065 if (isUnit) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10066 if (units.hasOwnProperty(name)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10067 return units[name];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10068 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10069 return '\\mathrm{' + name + '}';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10070 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10071
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10072 if (exports.symbols.hasOwnProperty(name)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10073 return exports.symbols[name];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10074 } else if (name.indexOf('_') !== -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10075 //symbol with index (eg. alpha_1)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10076 var index = name.indexOf('_');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10077 return exports.toSymbol(name.substring(0, index)) + '_{' + exports.toSymbol(name.substring(index + 1)) + '}';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10078 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10079 return name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10080 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10081
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10082 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10083 /* 90 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10084 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10085
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10086 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10087
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10088 function factory(type, config, load, typed) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10089 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10090 * Create a Matrix. The function creates a new `math.type.Matrix` object from
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10091 * an `Array`. A Matrix has utility functions to manipulate the data in the
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10092 * matrix, like getting the size and getting or setting values in the matrix.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10093 * Supported storage formats are 'dense' and 'sparse'.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10094 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10095 * Syntax:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10096 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10097 * math.matrix() // creates an empty matrix using default storage format (dense).
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10098 * math.matrix(data) // creates a matrix with initial data using default storage format (dense).
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10099 * math.matrix('dense') // creates an empty matrix using the given storage format.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10100 * math.matrix(data, 'dense') // creates a matrix with initial data using the given storage format.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10101 * math.matrix(data, 'sparse') // creates a sparse matrix with initial data.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10102 * math.matrix(data, 'sparse', 'number') // creates a sparse matrix with initial data, number data type.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10103 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10104 * Examples:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10105 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10106 * var m = math.matrix([[1, 2], [3, 4]]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10107 * m.size(); // Array [2, 2]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10108 * m.resize([3, 2], 5);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10109 * m.valueOf(); // Array [[1, 2], [3, 4], [5, 5]]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10110 * m.get([1, 0]) // number 3
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10111 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10112 * See also:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10113 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10114 * bignumber, boolean, complex, index, number, string, unit, sparse
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10115 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10116 * @param {Array \| Matrix} [data] A multi dimensional array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10117 * @param {string} [format] The Matrix storage format
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10118 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10119 * @return {Matrix} The created matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10120 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10121 var matrix = typed('matrix', {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10122 '': function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10123 return _create([]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10124 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10125
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10126 'string': function (format) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10127 return _create([], format);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10128 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10129
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10130 'string, string': function (format, datatype) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10131 return _create([], format, datatype);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10132 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10133
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10134 'Array': function (data) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10135 return _create(data);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10136 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10137
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10138 'Matrix': function (data) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10139 return _create(data, data.storage());
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10140 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10141
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10142 'Array \| Matrix, string': _create,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10143
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10144 'Array \| Matrix, string, string': _create
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10145 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10146
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10147 matrix.toTex = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10148 0: '\\begin{bmatrix}\\end{bmatrix}',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10149 1: '\\left(${args[0]}\\right)',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10150 2: '\\left(${args[0]}\\right)'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10151 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10152
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10153 return matrix;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10154
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10155 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10156 * Create a new Matrix with given storage format
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10157 * @param {Array} data
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10158 * @param {string} [format]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10159 * @param {string} [datatype]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10160 * @returns {Matrix} Returns a new Matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10161 * @private
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10162 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10163 function _create(data, format, datatype) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10164 // get storage format constructor
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10165 var M = type.Matrix.storage(format \|\| 'default');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10166
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10167 // create instance
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10168 return new M(data, datatype);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10169 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10170 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10171
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10172 exports.name = 'matrix';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10173 exports.factory = factory;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10174
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10175 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10176 /* 91 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10177 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10178
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10179 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10180
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10181 function factory(type, config, load, typed) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10182
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10183 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10184 * Add two scalar values, `x + y`.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10185 * This function is meant for internal use: it is used by the public function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10186 * `add`
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10187 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10188 * This function does not support collections (Array or Matrix), and does
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10189 * not validate the number of of inputs.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10190 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10191 * @param {number \| BigNumber \| Fraction \| Complex \| Unit} x First value to add
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10192 * @param {number \| BigNumber \| Fraction \| Complex} y Second value to add
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10193 * @return {number \| BigNumber \| Fraction \| Complex \| Unit} Sum of `x` and `y`
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10194 * @private
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10195 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10196 var add = typed('add', {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10197
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10198 'number, number': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10199 return x + y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10200 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10201
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10202 'Complex, Complex': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10203 return x.add(y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10204 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10205
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10206 'BigNumber, BigNumber': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10207 return x.plus(y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10208 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10209
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10210 'Fraction, Fraction': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10211 return x.add(y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10212 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10213
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10214 'Unit, Unit': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10215 if (x.value == null) throw new Error('Parameter x contains a unit with undefined value');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10216 if (y.value == null) throw new Error('Parameter y contains a unit with undefined value');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10217 if (!x.equalBase(y)) throw new Error('Units do not match');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10218
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10219 var res = x.clone();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10220 res.value = add(res.value, y.value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10221 res.fixPrefix = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10222 return res;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10223 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10224 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10225
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10226 return add;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10227 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10228
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10229 exports.factory = factory;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10230
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10231 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10232 /* 92 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10233 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10234
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10235 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10236
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10237 function factory(type, config, load, typed) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10238
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10239 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10240 * Multiply two scalar values, `x * y`.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10241 * This function is meant for internal use: it is used by the public function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10242 * `multiply`
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10243 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10244 * This function does not support collections (Array or Matrix), and does
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10245 * not validate the number of of inputs.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10246 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10247 * @param {number \| BigNumber \| Fraction \| Complex \| Unit} x First value to multiply
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10248 * @param {number \| BigNumber \| Fraction \| Complex} y Second value to multiply
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10249 * @return {number \| BigNumber \| Fraction \| Complex \| Unit} Multiplication of `x` and `y`
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10250 * @private
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10251 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10252 var multiplyScalar = typed('multiplyScalar', {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10253
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10254 'number, number': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10255 return x * y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10256 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10257
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10258 'Complex, Complex': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10259 return x.mul(y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10260 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10261
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10262 'BigNumber, BigNumber': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10263 return x.times(y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10264 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10265
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10266 'Fraction, Fraction': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10267 return x.mul(y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10268 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10269
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10270 'number \| Fraction \| BigNumber \| Complex, Unit': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10271 var res = y.clone();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10272 res.value = res.value === null ? res._normalize(x) : multiplyScalar(res.value, x);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10273 return res;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10274 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10275
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10276 'Unit, number \| Fraction \| BigNumber \| Complex': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10277 var res = x.clone();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10278 res.value = res.value === null ? res._normalize(y) : multiplyScalar(res.value, y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10279 return res;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10280 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10281
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10282 'Unit, Unit': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10283 return x.multiply(y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10284 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10285
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10286 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10287
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10288 return multiplyScalar;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10289 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10290
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10291 exports.factory = factory;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10292
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10293 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10294 /* 93 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10295 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10296
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10297 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10298
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10299 var nearlyEqual = __webpack_require__(72).nearlyEqual;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10300 var bigNearlyEqual = __webpack_require__(94);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10301
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10302 function factory(type, config, load, typed) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10303
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10304 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10305 * Test whether two values are equal.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10306 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10307 * @param {number \| BigNumber \| Fraction \| boolean \| Complex \| Unit} x First value to compare
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10308 * @param {number \| BigNumber \| Fraction \| boolean \| Complex} y Second value to compare
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10309 * @return {boolean} Returns true when the compared values are equal, else returns false
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10310 * @private
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10311 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10312 var equalScalar = typed('equalScalar', {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10313
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10314 'boolean, boolean': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10315 return x === y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10316 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10317
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10318 'number, number': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10319 return x === y \|\| nearlyEqual(x, y, config.epsilon);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10320 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10321
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10322 'BigNumber, BigNumber': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10323 return x.eq(y) \|\| bigNearlyEqual(x, y, config.epsilon);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10324 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10325
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10326 'Fraction, Fraction': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10327 return x.equals(y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10328 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10329
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10330 'Complex, Complex': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10331 return x.equals(y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10332 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10333
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10334 'Unit, Unit': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10335 if (!x.equalBase(y)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10336 throw new Error('Cannot compare units with different base');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10337 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10338 return equalScalar(x.value, y.value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10339 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10340
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10341 'string, string': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10342 return x === y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10343 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10344 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10345
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10346 return equalScalar;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10347 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10348
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10349 exports.factory = factory;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10350
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10351 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10352 /* 94 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10353 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10354
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10355 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10356
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10357 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10358 * Compares two BigNumbers.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10359 * @param {BigNumber} x First value to compare
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10360 * @param {BigNumber} y Second value to compare
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10361 * @param {number} [epsilon] The maximum relative difference between x and y
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10362 * If epsilon is undefined or null, the function will
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10363 * test whether x and y are exactly equal.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10364 * @return {boolean} whether the two numbers are nearly equal
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10365 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10366
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10367 module.exports = function nearlyEqual(x, y, epsilon) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10368 // if epsilon is null or undefined, test whether x and y are exactly equal
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10369 if (epsilon == null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10370 return x.eq(y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10371 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10372
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10373 // use "==" operator, handles infinities
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10374 if (x.eq(y)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10375 return true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10376 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10377
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10378 // NaN
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10379 if (x.isNaN() \|\| y.isNaN()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10380 return false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10381 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10382
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10383 // at this point x and y should be finite
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10384 if (x.isFinite() && y.isFinite()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10385 // check numbers are very close, needed when comparing numbers near zero
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10386 var diff = x.minus(y).abs();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10387 if (diff.isZero()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10388 return true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10389 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10390 // use relative error
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10391 var max = x.constructor.max(x.abs(), y.abs());
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10392 return diff.lte(max.times(epsilon));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10393 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10394 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10395
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10396 // Infinite and Number or negative Infinite and positive Infinite cases
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10397 return false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10398 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10399
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10400 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10401 /* 95 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10402 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10403
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10404 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10405
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10406 function factory(type, config, load, typed) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10407
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10408 var equalScalar = load(__webpack_require__(93));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10409
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10410 var SparseMatrix = type.SparseMatrix;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10411
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10412 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10413 * Iterates over SparseMatrix S nonzero items and invokes the callback function f(Sij, b).
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10414 * Callback function invoked NZ times (number of nonzero items in S).
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10415 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10416 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10417 * ┌ f(Sij, b) ; S(i,j) !== 0
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10418 * C(i,j) = ┤
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10419 * └ 0 ; otherwise
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10420 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10421 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10422 * @param {Matrix} s The SparseMatrix instance (S)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10423 * @param {Scalar} b The Scalar value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10424 * @param {Function} callback The f(Aij,b) operation to invoke
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10425 * @param {boolean} inverse A true value indicates callback should be invoked f(b,Sij)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10426 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10427 * @return {Matrix} SparseMatrix (C)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10428 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10429 * https://github.com/josdejong/mathjs/pull/346#issuecomment-97626813
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10430 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10431 var algorithm11 = function (s, b, callback, inverse) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10432 // sparse matrix arrays
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10433 var avalues = s._values;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10434 var aindex = s._index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10435 var aptr = s._ptr;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10436 var asize = s._size;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10437 var adt = s._datatype;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10438
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10439 // sparse matrix cannot be a Pattern matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10440 if (!avalues) throw new Error('Cannot perform operation on Pattern Sparse Matrix and Scalar value');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10441
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10442 // rows & columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10443 var rows = asize[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10444 var columns = asize[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10445
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10446 // datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10447 var dt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10448 // equal signature to use
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10449 var eq = equalScalar;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10450 // zero value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10451 var zero = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10452 // callback signature to use
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10453 var cf = callback;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10454
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10455 // process data types
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10456 if (typeof adt === 'string') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10457 // datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10458 dt = adt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10459 // find signature that matches (dt, dt)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10460 eq = typed.find(equalScalar, [dt, dt]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10461 // convert 0 to the same datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10462 zero = typed.convert(0, dt);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10463 // convert b to the same datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10464 b = typed.convert(b, dt);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10465 // callback
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10466 cf = typed.find(callback, [dt, dt]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10467 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10468
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10469 // result arrays
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10470 var cvalues = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10471 var cindex = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10472 var cptr = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10473 // matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10474 var c = new SparseMatrix({
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10475 values: cvalues,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10476 index: cindex,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10477 ptr: cptr,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10478 size: [rows, columns],
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10479 datatype: dt
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10480 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10481
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10482 // loop columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10483 for (var j = 0; j < columns; j++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10484 // initialize ptr
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10485 cptr[j] = cindex.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10486 // values in j
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10487 for (var k0 = aptr[j], k1 = aptr[j + 1], k = k0; k < k1; k++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10488 // row
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10489 var i = aindex[k];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10490 // invoke callback
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10491 var v = inverse ? cf(b, avalues[k]) : cf(avalues[k], b);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10492 // check value is zero
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10493 if (!eq(v, zero)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10494 // push index & value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10495 cindex.push(i);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10496 cvalues.push(v);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10497 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10498 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10499 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10500 // update ptr
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10501 cptr[columns] = cindex.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10502
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10503 // return sparse matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10504 return c;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10505 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10506
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10507 return algorithm11;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10508 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10509
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10510 exports.name = 'algorithm11';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10511 exports.factory = factory;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10512
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10513 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10514 /* 96 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10515 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10516
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10517 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10518
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10519 var clone = __webpack_require__(69).clone;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10520
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10521 function factory(type, config, load, typed) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10522
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10523 var DenseMatrix = type.DenseMatrix;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10524
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10525 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10526 * Iterates over DenseMatrix items and invokes the callback function f(Aij..z, b).
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10527 * Callback function invoked MxN times.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10528 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10529 * C(i,j,...z) = f(Aij..z, b)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10530 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10531 * @param {Matrix} a The DenseMatrix instance (A)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10532 * @param {Scalar} b The Scalar value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10533 * @param {Function} callback The f(Aij..z,b) operation to invoke
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10534 * @param {boolean} inverse A true value indicates callback should be invoked f(b,Aij..z)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10535 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10536 * @return {Matrix} DenseMatrix (C)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10537 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10538 * https://github.com/josdejong/mathjs/pull/346#issuecomment-97659042
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10539 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10540 var algorithm14 = function (a, b, callback, inverse) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10541 // a arrays
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10542 var adata = a._data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10543 var asize = a._size;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10544 var adt = a._datatype;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10545
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10546 // datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10547 var dt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10548 // callback signature to use
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10549 var cf = callback;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10550
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10551 // process data types
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10552 if (typeof adt === 'string') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10553 // datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10554 dt = adt;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10555 // convert b to the same datatype
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10556 b = typed.convert(b, dt);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10557 // callback
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10558 cf = typed.find(callback, [dt, dt]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10559 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10560
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10561 // populate cdata, iterate through dimensions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10562 var cdata = asize.length > 0 ? _iterate(cf, 0, asize, asize[0], adata, b, inverse) : [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10563
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10564 // c matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10565 return new DenseMatrix({
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10566 data: cdata,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10567 size: clone(asize),
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10568 datatype: dt
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10569 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10570 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10571
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10572 // recursive function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10573 var _iterate = function (f, level, s, n, av, bv, inverse) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10574 // initialize array for this level
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10575 var cv = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10576 // check we reach the last level
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10577 if (level === s.length - 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10578 // loop arrays in last level
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10579 for (var i = 0; i < n; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10580 // invoke callback and store value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10581 cv[i] = inverse ? f(bv, av[i]) : f(av[i], bv);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10582 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10583 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10584 // iterate current level
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10585 for (var j = 0; j < n; j++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10586 // iterate next level
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10587 cv[j] = _iterate(f, level + 1, s, s[level + 1], av[j], bv, inverse);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10588 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10589 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10590 return cv;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10591 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10592
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10593 return algorithm14;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10594 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10595
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10596 exports.name = 'algorithm14';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10597 exports.factory = factory;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10598
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10599 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10600 /* 97 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10601 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10602
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10603 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10604
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10605 var isInteger = __webpack_require__(72).isInteger;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10606 var size = __webpack_require__(83).size;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10607
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10608 function factory(type, config, load, typed) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10609 var latex = __webpack_require__(89);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10610 var eye = load(__webpack_require__(98));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10611 var multiply = load(__webpack_require__(82));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10612 var matrix = load(__webpack_require__(90));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10613 var fraction = load(__webpack_require__(99));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10614 var number = load(__webpack_require__(100));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10615
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10616 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10617 * Calculates the power of x to y, `x ^ y`.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10618 * Matrix exponentiation is supported for square matrices `x`, and positive
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10619 * integer exponents `y`.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10620 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10621 * For cubic roots of negative numbers, the function returns the principal
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10622 * root by default. In order to let the function return the real root,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10623 * math.js can be configured with `math.config({predictable: true})`.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10624 * To retrieve all cubic roots of a value, use `math.cbrt(x, true)`.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10625 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10626 * Syntax:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10627 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10628 * math.pow(x, y)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10629 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10630 * Examples:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10631 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10632 * math.pow(2, 3); // returns number 8
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10633 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10634 * var a = math.complex(2, 3);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10635 * math.pow(a, 2) // returns Complex -5 + 12i
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10636 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10637 * var b = [[1, 2], [4, 3]];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10638 * math.pow(b, 2); // returns Array [[9, 8], [16, 17]]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10639 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10640 * See also:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10641 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10642 * multiply, sqrt, cbrt, nthRoot
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10643 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10644 * @param {number \| BigNumber \| Complex \| Array \| Matrix} x The base
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10645 * @param {number \| BigNumber \| Complex} y The exponent
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10646 * @return {number \| BigNumber \| Complex \| Array \| Matrix} The value of `x` to the power `y`
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10647 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10648 var pow = typed('pow', {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10649 'number, number': _pow,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10650
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10651 'Complex, Complex': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10652 return x.pow(y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10653 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10654
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10655 'BigNumber, BigNumber': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10656 if (y.isInteger() \|\| x >= 0 \|\| config.predictable) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10657 return x.pow(y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10658 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10659 return new type.Complex(x.toNumber(), 0).pow(y.toNumber(), 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10660 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10661 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10662
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10663 'Fraction, Fraction': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10664 if (y.d !== 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10665 if (config.predictable) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10666 throw new Error('Function pow does not support non-integer exponents for fractions.');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10667 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10668 return _pow(x.valueOf(), y.valueOf());
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10669 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10670 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10671 return x.pow(y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10672 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10673 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10674
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10675 'Array, number': _powArray,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10676
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10677 'Array, BigNumber': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10678 return _powArray(x, y.toNumber());
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10679 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10680
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10681 'Matrix, number': _powMatrix,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10682
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10683 'Matrix, BigNumber': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10684 return _powMatrix(x, y.toNumber());
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10685 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10686
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10687 'Unit, number': function (x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10688 return x.pow(y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10689 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10690
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10691 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10692
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10693 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10694 * Calculates the power of x to y, x^y, for two numbers.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10695 * @param {number} x
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10696 * @param {number} y
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10697 * @return {number \| Complex} res
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10698 * @private
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10699 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10700 function _pow(x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10701
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10702 // Alternatively could define a 'realmode' config option or something, but
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10703 // 'predictable' will work for now
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10704 if (config.predictable && !isInteger(y) && x < 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10705 // Check to see if y can be represented as a fraction
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10706 try {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10707 var yFrac = fraction(y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10708 var yNum = number(yFrac);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10709 if (y === yNum \|\| Math.abs((y - yNum) / y) < 1e-14) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10710 if (yFrac.d % 2 === 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10711 return (yFrac.n % 2 === 0 ? 1 : -1) * Math.pow(-x, y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10712 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10713 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10714 } catch (ex) {}
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10715 // fraction() throws an error if y is Infinity, etc.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10716
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10717
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10718 // Unable to express y as a fraction, so continue on
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10719 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10720
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10721 if (isInteger(y) \|\| x >= 0 \|\| config.predictable) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10722 return Math.pow(x, y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10723 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10724 return new type.Complex(x, 0).pow(y, 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10725 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10726 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10727
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10728 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10729 * Calculate the power of a 2d array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10730 * @param {Array} x must be a 2 dimensional, square matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10731 * @param {number} y a positive, integer value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10732 * @returns {Array}
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10733 * @private
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10734 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10735 function _powArray(x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10736 if (!isInteger(y) \|\| y < 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10737 throw new TypeError('For A^b, b must be a positive integer (value is ' + y + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10738 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10739 // verify that A is a 2 dimensional square matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10740 var s = size(x);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10741 if (s.length != 2) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10742 throw new Error('For A^b, A must be 2 dimensional (A has ' + s.length + ' dimensions)');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10743 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10744 if (s[0] != s[1]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10745 throw new Error('For A^b, A must be square (size is ' + s[0] + 'x' + s[1] + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10746 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10747
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10748 var res = eye(s[0]).valueOf();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10749 var px = x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10750 while (y >= 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10751 if ((y & 1) == 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10752 res = multiply(px, res);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10753 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10754 y >>= 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10755 px = multiply(px, px);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10756 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10757 return res;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10758 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10759
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10760 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10761 * Calculate the power of a 2d matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10762 * @param {Matrix} x must be a 2 dimensional, square matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10763 * @param {number} y a positive, integer value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10764 * @returns {Matrix}
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10765 * @private
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10766 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10767 function _powMatrix(x, y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10768 return matrix(_powArray(x.valueOf(), y));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10769 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10770
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10771 pow.toTex = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10772 2: '\\left(${args[0]}\\right)' + latex.operators['pow'] + '{${args[1]}}'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10773 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10774
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10775 return pow;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10776 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10777
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10778 exports.name = 'pow';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10779 exports.factory = factory;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10780
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10781 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10782 /* 98 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10783 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10784
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10785 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10786
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10787 var array = __webpack_require__(83);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10788 var isInteger = __webpack_require__(72).isInteger;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10789
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10790 function factory(type, config, load, typed) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10791
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10792 var matrix = load(__webpack_require__(90));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10793
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10794 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10795 * Create a 2-dimensional identity matrix with size m x n or n x n.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10796 * The matrix has ones on the diagonal and zeros elsewhere.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10797 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10798 * Syntax:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10799 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10800 * math.eye(n)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10801 * math.eye(n, format)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10802 * math.eye(m, n)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10803 * math.eye(m, n, format)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10804 * math.eye([m, n])
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10805 * math.eye([m, n], format)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10806 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10807 * Examples:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10808 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10809 * math.eye(3); // returns [[1, 0, 0], [0, 1, 0], [0, 0, 1]]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10810 * math.eye(3, 2); // returns [[1, 0], [0, 1], [0, 0]]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10811 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10812 * var A = [[1, 2, 3], [4, 5, 6]];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10813 * math.eye(math.size(A)); // returns [[1, 0, 0], [0, 1, 0]]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10814 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10815 * See also:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10816 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10817 * diag, ones, zeros, size, range
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10818 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10819 * @param {...number \| Matrix \| Array} size The size for the matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10820 * @param {string} [format] The Matrix storage format
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10821 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10822 * @return {Matrix \| Array \| number} A matrix with ones on the diagonal.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10823 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10824 var eye = typed('eye', {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10825 '': function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10826 return config.matrix === 'Matrix' ? matrix([]) : [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10827 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10828
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10829 'string': function (format) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10830 return matrix(format);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10831 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10832
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10833 'number \| BigNumber': function (rows) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10834 return _eye(rows, rows, config.matrix === 'Matrix' ? 'default' : undefined);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10835 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10836
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10837 'number \| BigNumber, string': function (rows, format) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10838 return _eye(rows, rows, format);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10839 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10840
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10841 'number \| BigNumber, number \| BigNumber': function (rows, cols) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10842 return _eye(rows, cols, config.matrix === 'Matrix' ? 'default' : undefined);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10843 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10844
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10845 'number \| BigNumber, number \| BigNumber, string': function (rows, cols, format) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10846 return _eye(rows, cols, format);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10847 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10848
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10849 'Array': function (size) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10850 return _eyeVector(size);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10851 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10852
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10853 'Array, string': function (size, format) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10854 return _eyeVector(size, format);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10855 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10856
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10857 'Matrix': function (size) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10858 return _eyeVector(size.valueOf(), size.storage());
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10859 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10860
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10861 'Matrix, string': function (size, format) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10862 return _eyeVector(size.valueOf(), format);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10863 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10864 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10865
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10866 eye.toTex = undefined; // use default template
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10867
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10868 return eye;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10869
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10870 function _eyeVector(size, format) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10871 switch (size.length) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10872 case 0:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10873 return format ? matrix(format) : [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10874 case 1:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10875 return _eye(size[0], size[0], format);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10876 case 2:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10877 return _eye(size[0], size[1], format);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10878 default:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10879 throw new Error('Vector containing two values expected');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10880 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10881 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10882
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10883 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10884 * Create an identity matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10885 * @param {number \| BigNumber} rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10886 * @param {number \| BigNumber} cols
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10887 * @param {string} [format]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10888 * @returns {Matrix}
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10889 * @private
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10890 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10891 function _eye(rows, cols, format) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10892 // BigNumber constructor with the right precision
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10893 var Big = rows && rows.isBigNumber === true ? type.BigNumber : cols && cols.isBigNumber === true ? type.BigNumber : null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10894
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10895 if (rows && rows.isBigNumber === true) rows = rows.toNumber();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10896 if (cols && cols.isBigNumber === true) cols = cols.toNumber();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10897
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10898 if (!isInteger(rows) \|\| rows < 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10899 throw new Error('Parameters in function eye must be positive integers');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10900 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10901 if (!isInteger(cols) \|\| cols < 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10902 throw new Error('Parameters in function eye must be positive integers');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10903 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10904
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10905 var one = Big ? new type.BigNumber(1) : 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10906 var defaultValue = Big ? new Big(0) : 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10907 var size = [rows, cols];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10908
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10909 // check we need to return a matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10910 if (format) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10911 // get matrix storage constructor
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10912 var F = type.Matrix.storage(format);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10913 // create diagonal matrix (use optimized implementation for storage format)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10914 return F.diagonal(size, one, 0, defaultValue);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10915 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10916
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10917 // create and resize array
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10918 var res = array.resize([], size, defaultValue);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10919 // fill in ones on the diagonal
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10920 var minimum = rows < cols ? rows : cols;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10921 // fill diagonal
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10922 for (var d = 0; d < minimum; d++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10923 res[d][d] = one;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10924 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10925 return res;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10926 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10927 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10928
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10929 exports.name = 'eye';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10930 exports.factory = factory;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10931
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10932 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10933 /* 99 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10934 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10935
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10936 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10937
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10938 var deepMap = __webpack_require__(80);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10939
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10940 function factory(type, config, load, typed) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10941 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10942 * Create a fraction convert a value to a fraction.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10943 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10944 * Syntax:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10945 * math.fraction(numerator, denominator)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10946 * math.fraction({n: numerator, d: denominator})
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10947 * math.fraction(matrix: Array \| Matrix) Turn all matrix entries
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10948 * into fractions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10949 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10950 * Examples:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10951 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10952 * math.fraction(1, 3);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10953 * math.fraction('2/3');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10954 * math.fraction({n: 2, d: 3});
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10955 * math.fraction([0.2, 0.25, 1.25]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10956 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10957 * See also:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10958 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10959 * bignumber, number, string, unit
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10960 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10961 * @param {number \| string \| Fraction \| BigNumber \| Array \| Matrix} [args]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10962 * Arguments specifying the numerator and denominator of
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10963 * the fraction
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10964 * @return {Fraction \| Array \| Matrix} Returns a fraction
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10965 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10966 var fraction = typed('fraction', {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10967 'number': function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10968 if (!isFinite(x) \|\| isNaN(x)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10969 throw new Error(x + ' cannot be represented as a fraction');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10970 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10971
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10972 return new type.Fraction(x);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10973 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10974
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10975 'string': function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10976 return new type.Fraction(x);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10977 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10978
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10979 'number, number': function (numerator, denominator) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10980 return new type.Fraction(numerator, denominator);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10981 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10982
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10983 'BigNumber': function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10984 return new type.Fraction(x.toString());
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10985 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10986
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10987 'Fraction': function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10988 return x; // fractions are immutable
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10989 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10990
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10991 'Object': function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10992 return new type.Fraction(x);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10993 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10994
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10995 'Array \| Matrix': function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10996 return deepMap(x, fraction);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10997 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10998 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	10999
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11000 return fraction;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11001 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11002
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11003 exports.name = 'fraction';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11004 exports.factory = factory;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11005
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11006 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11007 /* 100 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11008 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11009
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11010 'use strict';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11011
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11012 var deepMap = __webpack_require__(80);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11013
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11014 function factory(type, config, load, typed) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11015 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11016 * Create a number or convert a string, boolean, or unit to a number.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11017 * When value is a matrix, all elements will be converted to number.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11018 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11019 * Syntax:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11020 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11021 * math.number(value)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11022 * math.number(unit, valuelessUnit)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11023 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11024 * Examples:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11025 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11026 * math.number(2); // returns number 2
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11027 * math.number('7.2'); // returns number 7.2
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11028 * math.number(true); // returns number 1
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11029 * math.number([true, false, true, true]); // returns [1, 0, 1, 1]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11030 * math.number(math.unit('52cm'), 'm'); // returns 0.52
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11031 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11032 * See also:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11033 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11034 * bignumber, boolean, complex, index, matrix, string, unit
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11035 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11036 * @param {string \| number \| BigNumber \| Fraction \| boolean \| Array \| Matrix \| Unit \| null} [value] Value to be converted
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11037 * @param {Unit \| string} [valuelessUnit] A valueless unit, used to convert a unit to a number
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11038 * @return {number \| Array \| Matrix} The created number
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11039 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11040 var number = typed('number', {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11041 '': function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11042 return 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11043 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11044
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11045 'number': function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11046 return x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11047 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11048
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11049 'string': function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11050 var num = Number(x);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11051 if (isNaN(num)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11052 throw new SyntaxError('String "' + x + '" is no valid number');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11053 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11054 return num;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11055 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11056
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11057 'BigNumber': function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11058 return x.toNumber();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11059 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11060
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11061 'Fraction': function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11062 return x.valueOf();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11063 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11064
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11065 'Unit': function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11066 throw new Error('Second argument with valueless unit expected');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11067 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11068
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11069 'Unit, string \| Unit': function (unit, valuelessUnit) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11070 return unit.toNumber(valuelessUnit);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11071 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11072
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11073 'Array \| Matrix': function (x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11074 return deepMap(x, number);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11075 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11076 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11077
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11078 number.toTex = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11079 0: '0',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11080 1: '\\left(${args[0]}\\right)',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11081 2: '\\left(\\left(${args[0]}\\right)${args[1]}\\right)'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11082 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11083
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11084 return number;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11085 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11086
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11087 exports.name = 'number';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11088 exports.factory = factory;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11089
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11090 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11091 /* 101 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11092 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11093
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11094 module.exports = function get_previous_zoom(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11095 var prev_zoom = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11096
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11097 var inst_trans = d3.select(params.root + ' .clust_group').attr('transform');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11098
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11099 if (inst_trans != null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11100
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11101 // prevent from crashing if no scaling was done
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11102 if (inst_trans.indexOf('scale') > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11103 prev_zoom.zoom_x = parseFloat(inst_trans.split('scale')[1].replace('(', '').replace(')', '').split(',')[0]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11104
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11105 prev_zoom.zoom_y = parseFloat(inst_trans.split('scale')[1].replace('(', '').replace(')', '').split(',')[1]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11106 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11107 prev_zoom.zoom_x = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11108 prev_zoom.zoom_y = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11109 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11110 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11111 prev_zoom.zoom_x = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11112 prev_zoom.zoom_y = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11113 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11114
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11115 return prev_zoom;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11116 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11117
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11118 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11119 /* 102 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11120 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11121
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11122 var d3_tip_custom = __webpack_require__(48);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11123
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11124 module.exports = function make_row_tooltips(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11125
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11126 if (params.labels.show_label_tooltips) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11127
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11128 // remove old tooltips
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11129 d3.selectAll(params.viz.root_tips + '_row_tip').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11130
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11131 var root_tip_selector = params.viz.root_tips.replace('.', '');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11132
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11133 // d3-tooltip
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11134 var row_tip = d3_tip_custom().attr('class', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11135 var class_string = root_tip_selector + ' d3-tip ' + root_tip_selector + '_row_tip';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11136 return class_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11137 }).direction('e').offset([0, 10]).style('display', 'none').html(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11138 var inst_name = d.name.replace(/_/g, ' ').split('#')[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11139 return "<span>" + inst_name + "</span>";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11140 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11141
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11142 d3.select(params.viz.viz_wrapper).select(params.root + ' .row_container').call(row_tip);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11143
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11144 d3.select(params.root + ' .row_label_zoom_container').selectAll('g').on('mouseover', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11145
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11146 d3.select(params.viz.root_tips + '_row_tip').classed(d.name, true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11147
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11148 d3.selectAll(params.viz.root_tips + '_row_tip').style('display', 'block');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11149
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11150 d3.select(this).select('text').classed('active', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11151
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11152 row_tip.show(d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11153
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11154 if (params.row_tip_callback != null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11155 params.row_tip_callback(params.viz.root_tips, d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11156 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11157 }).on('mouseout', function mouseout(d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11158
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11159 d3.selectAll(params.viz.root_tips + '_row_tip').style('display', 'none').classed(d.name, false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11160
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11161 d3.select(this).select('text').classed('active', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11162
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11163 row_tip.hide(d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11164 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11165 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11166
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11167 d3.select(params.root + ' .row_label_zoom_container').selectAll('g').on('mouseover', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11168 d3.select(this).select('text').classed('active', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11169 }).on('mouseout', function mouseout() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11170 d3.select(this).select('text').classed('active', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11171 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11172 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11173 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11174
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11175 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11176 /* 103 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11177 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11178
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11179 var utils = __webpack_require__(2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11180 var add_col_click_hlight = __webpack_require__(104);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11181 var col_reorder = __webpack_require__(105);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11182 var row_reorder = __webpack_require__(52);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11183 var make_col_tooltips = __webpack_require__(109);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11184 var col_viz_aid_triangle = __webpack_require__(110);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11185
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11186 module.exports = function make_col_label_container(cgm, text_delay = 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11187
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11188 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11189 var col_container;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11190
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11191 var col_nodes = params.network_data.col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11192
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11193 // offset click group column label
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11194 var x_offset_click = params.viz.x_scale.rangeBand() / 2 + params.viz.border_width.x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11195 // reduce width of rotated rects
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11196
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11197
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11198 // make container to pre-position zoomable elements
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11199 if (d3.select(params.root + ' .col_container').empty()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11200
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11201 col_container = d3.select(params.viz.viz_svg).append('g').attr('class', 'col_container').attr('transform', 'translate(' + params.viz.clust.margin.left + ',' + params.viz.norm_labels.margin.top + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11202
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11203 // white background rect for col labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11204 col_container.append('rect').attr('fill', params.viz.background_color) //!! prog_colors
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11205 .attr('width', 30 * params.viz.clust.dim.width + 'px').attr('height', params.viz.label_background.col).attr('class', 'white_bars');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11206
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11207 // col labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11208 col_container.append('g').attr('class', 'col_label_outer_container')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11209 // position the outer col label group
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11210 .attr('transform', 'translate(0,' + params.viz.norm_labels.width.col + ')').append('g').attr('class', 'col_zoom_container');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11211 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11212
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11213 col_container = d3.select(params.root + ' .col_container').attr('transform', 'translate(' + params.viz.clust.margin.left + ',' + params.viz.norm_labels.margin.top + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11214
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11215 // white background rect for col labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11216 col_container.select('.white_bars').attr('fill', params.viz.background_color) //!! prog_colors
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11217 .attr('width', 30 * params.viz.clust.dim.width + 'px').attr('height', params.viz.label_background.col);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11218
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11219 // col labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11220 col_container.select(params.root + ' .col_label_outer_container');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11221 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11222
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11223 // add main column label group
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11224 var col_label_obj = d3.select(params.root + ' .col_zoom_container').selectAll('.col_label_text').data(col_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11225 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11226 }).enter().append('g').attr('class', 'col_label_text').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11227 var inst_index = d.col_index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11228 return 'translate(' + params.viz.x_scale(inst_index) + ', 0) rotate(-90)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11229 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11230
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11231 // append group for individual column label
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11232 var col_label_group = col_label_obj
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11233 // append new group for rect and label (not white lines)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11234 .append('g').attr('class', 'col_label_group')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11235 // rotate column labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11236 .attr('transform', 'translate(' + params.viz.x_scale.rangeBand() / 2 + ',' + x_offset_click + ') rotate(45)').on('mouseover', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11237 d3.select(this).select('text').classed('active', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11238 }).on('mouseout', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11239 d3.select(this).select('text').classed('active', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11240 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11241
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11242 // append column value bars
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11243 if (utils.has(params.network_data.col_nodes[0], 'value')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11244
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11245 col_label_group.append('rect').attr('class', 'col_bars').attr('width', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11246 var inst_value = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11247 if (d.value > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11248 inst_value = params.labels.bar_scale_col(d.value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11249 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11250 return inst_value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11251 })
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11252 // rotate labels - reduce width if rotating
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11253 .attr('height', params.viz.x_scale.rangeBand() * 0.66).style('fill', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11254 return d.value > 0 ? params.matrix.bar_colors[0] : params.matrix.bar_colors[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11255 }).attr('opacity', 0.6);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11256 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11257
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11258 // add column label
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11259 col_label_group.append('text').attr('x', 0)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11260 // manually tuned
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11261 .attr('y', params.viz.x_scale.rangeBand() * 0.64).attr('dx', params.viz.border_width.x).attr('text-anchor', 'start').attr('full_name', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11262 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11263 })
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11264 // original font size
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11265 .style('font-size', params.labels.default_fs_col + 'px').style('cursor', 'default').text(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11266 return utils.normal_name(d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11267 })
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11268 // .attr('pointer-events','none')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11269 .style('opacity', 0).transition().delay(text_delay).duration(text_delay).style('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11270
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11271 make_col_tooltips(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11272
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11273 // add triangle under rotated labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11274 col_label_group.append('path').style('stroke-width', 0).attr('d', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11275 return col_viz_aid_triangle(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11276 }).attr('fill', '#eee').style('opacity', 0).transition().delay(text_delay).duration(text_delay).style('opacity', params.viz.triangle_opacity);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11277
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11278 // add col callback function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11279 d3.selectAll(params.root + ' .col_label_text').on('click', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11280
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11281 if (typeof params.click_label == 'function') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11282 params.click_label(d.name, 'col');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11283 add_col_click_hlight(params, this, d.ini);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11284 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11285
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11286 if (params.tile_click_hlight) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11287 add_col_click_hlight(params, this, d.ini);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11288 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11289 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11290 }).on('dblclick', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11291
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11292 var data_attr = '__data__';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11293 var col_name = this[data_attr].name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11294
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11295 if (params.sim_mat) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11296 col_reorder(cgm, this, col_name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11297
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11298 var row_selection = d3.selectAll(params.root + ' .row_label_group').filter(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11299 return d.name == col_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11300 })[0][0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11301
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11302 row_reorder(cgm, row_selection, col_name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11303 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11304 col_reorder(cgm, this, col_name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11305 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11306
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11307 if (params.tile_click_hlight) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11308 add_col_click_hlight(params, this, d.ini);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11309 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11310 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11311 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11312
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11313 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11314 /* 104 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11315 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11316
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11317 module.exports = function (params, clicked_col, id_clicked_col) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11318
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11319 if (id_clicked_col != params.click_hlight_col) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11320
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11321 params.click_hlight_col = id_clicked_col;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11322
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11323 var rel_width_hlight = 6;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11324 var opacity_hlight = 0.85;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11325 var hlight_width = rel_width_hlight * params.viz.border_width.x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11326
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11327 d3.selectAll(params.root + ' .click_hlight').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11328
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11329 // // highlight selected column
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11330 // ///////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11331 // // unhilight and unbold all columns (already unbolded earlier)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11332 // d3.selectAll('.col_label_text')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11333 // .select('rect')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11334 // .style('opacity', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11335 // // highlight column name
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11336 // d3.select(clicked_col)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11337 // .select('rect')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11338 // .style('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11339
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11340 d3.select(clicked_col).append('rect').classed('click_hlight', true).classed('col_top_hlight', true).attr('width', params.viz.clust.dim.height).attr('height', hlight_width).attr('fill', params.matrix.hlight_color).attr('opacity', opacity_hlight).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11341 var tmp_translate_y = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11342 var tmp_translate_x = -(params.viz.clust.dim.height + params.viz.cat_room.col + params.viz.uni_margin);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11343 return 'translate(' + tmp_translate_x + ',' + tmp_translate_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11344 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11345
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11346 d3.select(clicked_col).append('rect').classed('click_hlight', true).classed('col_bottom_hlight', true).attr('width', params.viz.clust.dim.height).attr('height', hlight_width).attr('fill', params.matrix.hlight_color).attr('opacity', opacity_hlight).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11347 // reverse x and y since rotated
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11348 var tmp_translate_y = params.viz.x_scale.rangeBand() - hlight_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11349 var tmp_translate_x = -(params.viz.clust.dim.height + params.viz.cat_room.col + params.viz.uni_margin);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11350 return 'translate(' + tmp_translate_x + ',' + tmp_translate_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11351 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11352 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11353 d3.selectAll(params.root + ' .click_hlight').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11354 params.click_hlight_col = -666;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11355 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11356 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11357
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11358 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11359 /* 105 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11360 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11361
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11362 // var utils = require('../Utils_clust');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11363 var reposition_tile_highlight = __webpack_require__(53);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11364 var toggle_dendro_view = __webpack_require__(54);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11365 var show_visible_area = __webpack_require__(106);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11366 var ini_zoom_info = __webpack_require__(36);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11367 var get_previous_zoom = __webpack_require__(101);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11368 var calc_downsampled_levels = __webpack_require__(27);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11369
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11370 module.exports = function col_reorder(cgm, col_selection, inst_term) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11371
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11372 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11373 var prev_zoom = get_previous_zoom(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11374
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11375 if (prev_zoom.zoom_y === 1 && prev_zoom.zoom_x === 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11376
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11377 params.viz.inst_order.col = 'custom';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11378
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11379 toggle_dendro_view(cgm, 'col');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11380
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11381 d3.selectAll(params.root + ' .toggle_row_order .btn').classed('active', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11382
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11383 params.viz.run_trans = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11384
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11385 var mat = $.extend(true, {}, params.matrix.matrix);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11386 var row_nodes = params.network_data.row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11387 var col_nodes = params.network_data.col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11388
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11389 // find the column number of col_selection term from col_nodes
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11390 // gather column node names
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11391 var tmp_arr = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11392 col_nodes.forEach(function (node) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11393 tmp_arr.push(node.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11394 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11395
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11396 // find index
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11397 var inst_col = _.indexOf(tmp_arr, inst_term);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11398
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11399 // gather the values of the input genes
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11400 tmp_arr = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11401 row_nodes.forEach(function (node, index) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11402 tmp_arr.push(mat[index].row_data[inst_col].value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11403 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11404
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11405 // sort the cols
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11406 var tmp_sort = d3.range(tmp_arr.length).sort(function (a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11407 return tmp_arr[b] - tmp_arr[a];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11408 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11409
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11410 // resort rows (rows are reorderd by double clicking a col)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11411 params.viz.y_scale.domain(tmp_sort);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11412
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11413 // save to custom row order
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11414 params.matrix.orders.custom_col = tmp_sort;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11415
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11416 var t;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11417
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11418 var row_nodes_names = params.network_data.row_nodes_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11419
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11420 // reorder
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11421 if (params.network_data.links.length > params.matrix.def_large_matrix) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11422 t = d3.select(params.root + ' .viz_svg');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11423 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11424 t = d3.select(params.root + ' .viz_svg').transition().duration(2500);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11425 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11426
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11427 // reorder row_label_triangle groups
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11428 t.selectAll('.row_cat_group').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11429 var inst_index = _.indexOf(row_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11430 return 'translate(0,' + params.viz.y_scale(inst_index) + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11431 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11432
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11433 // Move Row Labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11434 t.select('.row_label_zoom_container').selectAll('.row_label_group').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11435 var inst_index = _.indexOf(row_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11436 return 'translate(0,' + params.viz.y_scale(inst_index) + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11437 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11438
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11439 // only update matri if not downsampled
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11440 if (params.viz.ds_level === -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11441 // reorder matrix rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11442 t.selectAll('.row').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11443 var inst_index = _.indexOf(row_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11444 return 'translate(0,' + params.viz.y_scale(inst_index) + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11445 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11446 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11447
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11448 // highlight selected column
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11449 ///////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11450 // unhilight and unbold all columns (already unbolded earlier)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11451 d3.selectAll(params.root + ' .col_label_text').select('.highlight_rect').style('opacity', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11452 // highlight column name
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11453 d3.select(col_selection).select('.highlight_rect').style('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11454
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11455 // redefine x and y positions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11456 params.network_data.links.forEach(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11457 d.x = params.viz.x_scale(d.target);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11458 d.y = params.viz.y_scale(d.source);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11459 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11460
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11461 reposition_tile_highlight(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11462
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11463 params.zoom_info = ini_zoom_info();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11464
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11465 setTimeout(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11466 params.viz.run_trans = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11467 }, 2500);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11468
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11469 // calculate downsmapling if necessary
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11470 if (params.viz.ds_num_levels > 0 && params.viz.ds_level >= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11471
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11472 calc_downsampled_levels(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11473
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11474 var zooming_stopped = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11475 var zooming_out = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11476 var make_all_rows = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11477 // show_visible_area is also run with two_translate_zoom, but at that point
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11478 // the parameters were not updated and two_translate_zoom if only run
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11479 // if needed to reset zoom
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11480 show_visible_area(cgm, zooming_stopped, zooming_out, make_all_rows);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11481 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11482 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11483 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11484
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11485 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11486 /* 106 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11487 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11488
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11489 var find_viz_rows = __webpack_require__(107);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11490 var make_matrix_rows = __webpack_require__(41);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11491 var make_row_labels = __webpack_require__(50);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11492 var make_row_visual_aid_triangles = __webpack_require__(108);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11493
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11494 module.exports = function show_visible_area(cgm, zooming_stopped = false, zooming_out = false, make_all_rows = false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11495
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11496 // console.log('show_visible_area stopped: ' + String(zooming_stopped));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11497
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11498 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11499 var zoom_info = params.zoom_info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11500
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11501 // update ds_level if necessary
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11502 //////////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11503 var check_ds_level = params.viz.ds_level;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11504 var old_ds_level = params.viz.ds_level;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11505
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11506 // toggle the downsampling level (if necessary)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11507 if (params.viz.ds === null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11508 check_ds_level = -1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11509 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11510
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11511 check_ds_level = Math.floor(Math.log(zoom_info.zoom_y) / Math.log(params.viz.ds_zt));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11512
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11513 if (check_ds_level > params.viz.ds_num_levels - 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11514 check_ds_level = -1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11515 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11516 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11517
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11518 // check if override_ds is necessary
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11519 //////////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11520 // force update of view if moving to more coarse view
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11521 var override_ds = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11522
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11523 if (old_ds_level == -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11524 // transitioning to more coarse downsampling view (from real data)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11525 if (check_ds_level >= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11526 override_ds = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11527 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11528 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11529 // transitioning to more coarse downsampling view
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11530 if (check_ds_level < old_ds_level) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11531 override_ds = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11532 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11533 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11534
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11535 // update level if zooming has stopped or if transitioning to more coarse view
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11536 var new_ds_level;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11537
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11538 if (zooming_stopped === true \|\| override_ds === true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11539
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11540 // update new_ds_level if necessary (if decreasing detail, zooming out)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11541 new_ds_level = check_ds_level;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11542
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11543 // set zooming_stopped to true in case of override_ds
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11544 zooming_stopped = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11545
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11546 params.viz.ds_level = new_ds_level;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11547 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11548 // keep the old level (zooming is still occuring and not zooming out)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11549 new_ds_level = old_ds_level;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11550 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11551
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11552 var viz_area = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11553 var buffer_size = 5;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11554 // get translation vector absolute values
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11555 viz_area.min_x = Math.abs(zoom_info.trans_x) / zoom_info.zoom_x - (buffer_size + 1) * params.viz.rect_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11556 viz_area.min_y = Math.abs(zoom_info.trans_y) / zoom_info.zoom_y - (buffer_size + 1) * params.viz.rect_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11557
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11558 viz_area.max_x = Math.abs(zoom_info.trans_x) / zoom_info.zoom_x + params.viz.clust.dim.width / zoom_info.zoom_x + buffer_size * params.viz.rect_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11559
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11560 viz_area.max_y = Math.abs(zoom_info.trans_y) / zoom_info.zoom_y + params.viz.clust.dim.height / zoom_info.zoom_y + buffer_size * params.viz.rect_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11561
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11562 // generate lists of visible rows/cols
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11563 find_viz_rows(params, viz_area);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11564
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11565 var missing_rows;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11566 if (make_all_rows === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11567 missing_rows = _.difference(params.viz.viz_nodes.row, params.viz.viz_nodes.curr_row);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11568 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11569 // make all rows (reordering)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11570 missing_rows = 'all';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11571
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11572 // remove downsampled rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11573 d3.selectAll(params.root + ' .ds' + String(new_ds_level) + '_row').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11574 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11575
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11576 if (params.viz.ds != null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11577 var ds_row_class = '.ds' + String(params.viz.ds_level) + '_row';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11578 d3.selectAll(ds_row_class).style('display', 'block');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11579 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11580
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11581 // if downsampling
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11582 if (new_ds_level >= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11583 // remove old rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11584 d3.selectAll(params.root + ' .row').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11585 // remove tile tooltips and row tooltips
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11586 d3.selectAll(params.viz.root_tips + '_tile_tip').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11587 d3.selectAll(params.viz.root_tips + '_row_tip').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11588 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11589
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11590 // default state for downsampling
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11591 var inst_matrix;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11592
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11593 if (new_ds_level < 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11594 // set matrix to default matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11595 inst_matrix = params.matrix.matrix;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11596
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11597 // make row visual-aid triangles
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11598 make_row_visual_aid_triangles(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11599 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11600 // set matrix to downsampled matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11601 inst_matrix = params.matrix.ds_matrix[new_ds_level];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11602
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11603 d3.selectAll(params.root + ' .row_cat_group path').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11604 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11605
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11606 // also remove row visual aid triangles if zooming out
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11607 if (zooming_out === true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11608 d3.selectAll(params.root + ' .row_cat_group path').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11609 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11610
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11611 // remove rows and labels that are not visible and change ds_level
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11612 /* run when zooming has stopped */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11613 if (zooming_stopped === true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11614
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11615 // remove not visible matrix rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11616 if (new_ds_level >= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11617
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11618 // remove downsampled rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11619 d3.selectAll(params.root + ' .ds' + String(new_ds_level) + '_row').each(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11620 if (_.contains(params.viz.viz_nodes.row, d.name) === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11621 d3.select(this).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11622 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11623 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11624 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11625 // remove real data rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11626 d3.selectAll(params.root + ' .row').each(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11627 if (_.contains(params.viz.viz_nodes.row, d.name) === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11628 d3.select(this).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11629 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11630 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11631 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11632
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11633 // remove not visible row labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11634 d3.selectAll(params.root + ' .row_label_group').each(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11635 if (_.contains(params.viz.viz_nodes.row, d.name) === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11636 d3.select(this).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11637 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11638 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11639
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11640 // level change
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11641 if (new_ds_level != old_ds_level) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11642
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11643 // console.log('old: ' + String(old_ds_level) + ' new: '+ String(new_ds_level));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11644
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11645 // all visible rows are missing at new downsampling level
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11646 missing_rows = params.viz.viz_nodes.row;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11647
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11648 // remove old level rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11649 d3.selectAll(params.root + ' .ds' + String(old_ds_level) + '_row').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11650 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11651 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11652
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11653 // console.log('missing_rows: ' + String(missing_rows))
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11654 // console.log(missing_rows)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11655
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11656 // only make new matrix_rows if there are missing rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11657 if (missing_rows.length >= 1 \|\| missing_rows === 'all') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11658 make_matrix_rows(params, inst_matrix, missing_rows, new_ds_level);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11659 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11660
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11661 // only make new row_labels if there are missing row_labels, downsampled, and
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11662 // not zooming out or zooming has stopped
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11663 if (new_ds_level === -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11664
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11665 if (zooming_out === false \|\| zooming_stopped) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11666
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11667 // check if labels need to be made
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11668 ///////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11669 // get the names visible row_labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11670 var visible_row_labels = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11671 d3.selectAll(params.root + ' .row_label_group').each(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11672 visible_row_labels.push(d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11673 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11674
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11675 // find missing labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11676 var missing_row_labels = _.difference(params.viz.viz_nodes.row, visible_row_labels);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11677
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11678 // make labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11679 //////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11680 // only make row labels if there are any missing
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11681 var addback_thresh = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11682 if (missing_row_labels.length > addback_thresh) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11683 make_row_labels(cgm, missing_row_labels);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11684 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11685 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11686 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11687 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11688
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11689 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11690 /* 107 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11691 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11692
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11693 module.exports = function find_viz_rows(params, viz_area) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11694
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11695 var should_be_rows = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11696 var curr_rows = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11697
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11698 // find rows that should be visible
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11699 var y_trans;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11700
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11701 // default y_scale (no downsampling)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11702 var y_scale = params.viz.y_scale;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11703 var ds_level = params.viz.ds_level;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11704 var row_names = params.network_data.row_nodes_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11705 var row_class = '.row';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11706
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11707 // if downsampling redefine variables
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11708 if (ds_level >= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11709 y_scale = params.viz.ds[ds_level].y_scale;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11710 row_names = d3.range(params.matrix.ds_matrix[ds_level].length).map(String);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11711 row_class = '.ds' + String(ds_level) + '_row';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11712 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11713
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11714 // find rows that should be visible
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11715 for (var i = 0; i < row_names.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11716 y_trans = y_scale(i);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11717 if (y_trans < viz_area.max_y && y_trans > viz_area.min_y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11718 should_be_rows.push(row_names[i]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11719 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11720 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11721
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11722 // find currently visible rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11723 d3.selectAll(params.root + ' ' + row_class).each(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11724 curr_rows.push(d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11725 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11726
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11727 // nodes that should be visible
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11728 params.viz.viz_nodes.row = should_be_rows;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11729 // nodes that are visible
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11730 params.viz.viz_nodes.curr_row = curr_rows;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11731 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11732
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11733 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11734 /* 108 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11735 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11736
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11737 module.exports = function make_row_visual_aid_triangles(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11738
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11739 if (d3.select(params.root + ' .row_cat_group path').empty() === true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11740 d3.selectAll(params.root + ' .row_cat_group').append('path').attr('d', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11741 var origin_x = params.viz.cat_room.symbol_width - 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11742 var origin_y = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11743 var mid_x = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11744 var mid_y = params.viz.y_scale.rangeBand() / 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11745 var final_x = params.viz.cat_room.symbol_width - 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11746 var final_y = params.viz.y_scale.rangeBand();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11747 var output_string = 'M ' + origin_x + ',' + origin_y + ' L ' + mid_x + ',' + mid_y + ', L ' + final_x + ',' + final_y + ' Z';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11748 return output_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11749 }).attr('fill', '#eee').style('opacity', params.viz.triangle_opacity);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11750 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11751 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11752
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11753 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11754 /* 109 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11755 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11756
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11757 var d3_tip_custom = __webpack_require__(48);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11758
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11759 module.exports = function make_col_tooltips(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11760
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11761 if (params.labels.show_label_tooltips) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11762
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11763 // remove old col tooltips
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11764 d3.selectAll(params.viz.root_tips + '_col_tip').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11765
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11766 // d3-tooltip
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11767 var col_tip = d3_tip_custom().attr('class', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11768 var root_tip_selector = params.viz.root_tips.replace('.', '');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11769 var class_string = root_tip_selector + ' d3-tip ' + root_tip_selector + '_col_tip';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11770 return class_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11771 }).direction('w').offset([20, 0]).style('display', 'none').html(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11772 var inst_name = d.name.replace(/_/g, ' ').split('#')[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11773 return "<span>" + inst_name + "</span>";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11774 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11775
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11776 d3.select(params.viz.viz_wrapper).select('svg').select(params.root + ' .col_zoom_container').selectAll('.col_label_group').select('text').call(col_tip);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11777
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11778 d3.select(params.root + ' .col_zoom_container').selectAll('.col_label_group').on('mouseover', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11779
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11780 d3.selectAll(params.viz.root_tips + '_col_tip').style('display', 'block');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11781
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11782 col_tip.show(d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11783 if (params.col_tip_callback != null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11784 params.col_tip_callback(d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11785 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11786 }).on('mouseout', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11787 col_tip.hide(this);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11788
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11789 d3.selectAll(params.viz.root_tips + '_col_tip').style('display', 'none');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11790 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11791 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11792 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11793
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11794 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11795 /* 110 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11796 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11797
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11798 module.exports = function col_viz_aid_triangle(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11799
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11800 // x and y are flipped since its rotated
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11801 var reduce_rect_width = params.viz.x_scale.rangeBand() * 0.36;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11802 var origin_y = -params.viz.border_width.x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11803 var start_x = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11804 var final_x = params.viz.x_scale.rangeBand() - reduce_rect_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11805 var start_y = -(params.viz.x_scale.rangeBand() - reduce_rect_width + params.viz.border_width.x);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11806 var final_y = -params.viz.border_width.x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11807 var output_string = 'M ' + origin_y + ',0 L ' + start_y + ',' + start_x + ', L ' + final_y + ',' + final_x + ' Z';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11808 return output_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11809 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11810
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11811 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11812 /* 111 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11813 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11814
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11815 module.exports = function (params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11816
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11817 d3.select(params.viz.viz_svg).append('rect').attr('fill', params.viz.background_color).attr('height', params.viz.super_labels.dim.width + 'px').attr('width', '3000px').classed('super_col_bkg', true).classed('white_bars', true).attr('transform', 'translate(' + params.viz.clust.margin.left + ',' + params.viz.super_labels.margin.top + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11818
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11819 d3.select(params.viz.viz_svg).append('text').attr('class', 'super_col').text(params.labels.super.col).attr('text-anchor', 'center').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11820
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11821 var inst_text_width = d3.select(this)[0][0].getBBox().width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11822
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11823 var inst_x = params.viz.clust.dim.width / 2 + params.viz.norm_labels.width.row - inst_text_width / 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11824 var inst_y = params.viz.super_labels.dim.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11825 return 'translate(' + inst_x + ',' + inst_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11826 }).style('font-size', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11827 var inst_font_size = params.labels.super_label_fs * params.labels.super_label_scale;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11828 return inst_font_size + 'px';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11829 }).style('font-weight', 300);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11830
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11831 d3.select(params.viz.viz_svg).append('rect').attr('fill', params.viz.background_color).attr('width', params.viz.super_labels.dim.width + 'px').attr('height', '3000px').classed('super_row_bkg', true).classed('white_bars', true).attr('transform', 'translate(' + params.viz.super_labels.margin.left + ',0)');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11832
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11833 // append super title row group - used to separate translation from rotation
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11834 d3.select(params.viz.viz_svg).append('g').classed('super_row', true).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11835 // position in the middle of the clustergram
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11836 var inst_x = params.viz.super_labels.dim.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11837 var inst_y = params.viz.clust.dim.height / 2 + params.viz.norm_labels.width.col;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11838 return 'translate(' + inst_x + ',' + inst_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11839 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11840
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11841 // super row label (rotate the already translated title )
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11842 d3.select(params.root + ' .super_row').append('text').text(params.labels.super.row).attr('text-anchor', 'center').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11843 var inst_text_width = d3.select(this)[0][0].getBBox().width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11844 var inst_x_offset = inst_text_width / 2 + params.viz.norm_labels.width.col;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11845 var inst_offset = 'translate(0,' + inst_x_offset + '), rotate(-90)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11846 return inst_offset;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11847 }).style('font-size', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11848 var inst_font_size = params.labels.super_label_fs * params.labels.super_label_scale;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11849 return inst_font_size + 'px';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11850 }).style('font-weight', 300)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11851 .attr("dy", "1em");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11852 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11853
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11854 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11855 /* 112 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11856 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11857
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11858 var get_cat_title = __webpack_require__(113);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11859 var ini_cat_reorder = __webpack_require__(114);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11860 var make_row_cat_super_labels = __webpack_require__(122);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11861 var make_dendro_crop_buttons = __webpack_require__(60);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11862
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11863 module.exports = function Spillover(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11864
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11865 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11866
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11867 var viz = params.viz;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11868
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11869 // hide spillover from slanted column labels on right side
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11870 d3.select(viz.root + ' .col_container').append('path').style('stroke-width', '0').attr('d', 'M 0,0 L 1000,-1000, L 1000,0 Z').attr('fill', viz.background_color) //!! prog_colors
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11871 .attr('class', 'right_slant_triangle').attr('transform', 'translate(' + viz.clust.dim.width + ',' + viz.norm_labels.width.col + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11872
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11873 // hide spillover from slanted column labels on left side
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11874 d3.select(viz.root + ' .col_container').append('path').style('stroke-width', '0').attr('d', 'M 0,0 L 500,-500, L 0,-500 Z').attr('fill', viz.background_color).attr('class', 'left_slant_triangle')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11875 // shift left by 1 px to prevent cutting off labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11876 .attr('transform', 'translate(-1,' + viz.norm_labels.width.col + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11877
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11878 var rect_height = viz.clust.margin.top + viz.uni_margin / 5;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11879 // white rect to cover excess labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11880 d3.select(viz.viz_svg).append('rect').attr('fill', viz.background_color) //!! prog_colors
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11881 .attr('width', viz.clust.margin.left).attr('height', rect_height).attr('class', 'top_left_white');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11882
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11883 var inst_height = viz.cat_room.col + 1.5 * viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11884 // white rect to cover excess labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11885 d3.select(viz.viz_svg).append('rect').attr('fill', viz.background_color).attr('width', 2 * viz.clust.dim.width).attr('height', inst_height).attr('class', 'top_right_white').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11886 var tmp_left = viz.clust.margin.left + viz.clust.dim.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11887 var tmp_top = viz.norm_labels.width.col + viz.norm_labels.margin.top - viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11888 return 'translate(' + tmp_left + ', ' + tmp_top + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11889 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11890
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11891 x_offset = viz.clust.margin.left + viz.clust.dim.width + viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11892 y_offset = viz.norm_labels.margin.top + viz.norm_labels.width.col + 2.5 * viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11893 var cat_text_size = 1.15 * viz.cat_room.symbol_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11894 var cat_super_opacity = 0.65;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11895 var extra_y_room = 1.25;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11896
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11897 // col category super labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11898 if (viz.show_categories.col) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11899
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11900 d3.select(viz.viz_svg).selectAll().data(viz.all_cats.col).enter().append('text').classed('col_cat_super', true).style('font-size', cat_text_size + 'px').style('opacity', cat_super_opacity).style('cursor', 'default').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11901 var inst_cat = parseInt(d.split('-')[1], 10);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11902 var inst_y = y_offset + extra_y_room * viz.cat_room.symbol_width * inst_cat;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11903 return 'translate(' + x_offset + ',' + inst_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11904 }).text(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11905 return get_cat_title(viz, d, 'col');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11906 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11907 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11908
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11909 // row category super labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11910 make_row_cat_super_labels(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11911
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11912 // white border bottom - prevent clustergram from hitting border
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11913 if (viz.show_dendrogram) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11914 // quick fix to make room for crop buttons
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11915 y_offset = viz.clust.margin.top + viz.clust.dim.height + viz.dendro_room.col - 2 * viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11916 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11917 y_offset = viz.clust.margin.top + viz.clust.dim.height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11918 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11919
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11920 var b_spill_container = d3.select(viz.viz_svg).append('g').classed('bottom_spillover_container', true).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11921 // shift up enough to show the entire border width
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11922 return 'translate(0,' + y_offset + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11923 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11924
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11925 b_spill_container.append('rect').attr('class', 'bottom_spillover').attr('fill', viz.background_color) //!! prog_colors
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11926 .attr('width', viz.svg_dim.width).attr('height', 2 * viz.svg_dim.height);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11927
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11928 x_offset = viz.clust.margin.left;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11929 y_offset = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11930 b_spill_container.append('g').classed('col_dendro_icons_container', true).attr('transform', 'translate(' + x_offset + ',' + y_offset + ')').append('g').classed('col_dendro_icons_group', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11931
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11932 make_dendro_crop_buttons(cgm, 'col');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11933
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11934 var x_offset = viz.clust.margin.left + viz.clust.dim.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11935 var y_offset = viz.clust.margin.top + viz.clust.dim.height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11936 var tmp_width = viz.cat_room.col + viz.clust.dim.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11937 var tmp_height = viz.cat_room.row + 10 * viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11938 d3.select(viz.viz_svg).append('rect').attr('fill', viz.background_color).attr('width', tmp_width).attr('height', tmp_height).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11939 return 'translate(' + x_offset + ',' + y_offset + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11940 }).classed('white_bars', true).classed('dendro_corner_spillover', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11941
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11942 // hide spillover left top of col dendrogram
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11943 x_offset = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11944 y_offset = viz.clust.margin.top + viz.clust.dim.height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11945 tmp_width = viz.clust.margin.left;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11946 tmp_height = viz.clust.dim.height * 10;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11947 d3.select(viz.viz_svg).append('rect').attr('fill', viz.background_color).attr('width', tmp_width).attr('height', tmp_height).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11948 return 'translate(' + x_offset + ',' + y_offset + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11949 }).classed('white_bars', true).classed('dendro_col_spillover', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11950
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11951 ini_cat_reorder(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11952 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11953
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11954 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11955 /* 113 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11956 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11957
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11958 module.exports = function get_cat_title(viz, inst_cat, inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11959 var cat_title;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11960
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11961 // make default title if none is given
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11962 if (viz.cat_names[inst_rc][inst_cat] === inst_cat) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11963 var inst_num = parseInt(inst_cat.split('-')[1], 10) + 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11964 // generate placeholder title
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11965 cat_title = 'Category ' + inst_num;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11966 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11967 // make real title
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11968 cat_title = viz.cat_names[inst_rc][inst_cat];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11969 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11970
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11971 return cat_title;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11972 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11973
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11974 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11975 /* 114 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11976 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11977
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11978 var all_reorder = __webpack_require__(115);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11979
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11980 module.exports = function ini_cat_reorder(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11981 /* eslint-disable */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11982
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11983 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11984
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11985 _.each(['row', 'col'], function (inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11986
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11987 if (params.viz.show_categories[inst_rc]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11988 d3.selectAll(params.root + ' .' + inst_rc + '_cat_super').on('dblclick', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11989
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11990 if (params.sim_mat) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11991 inst_rc = 'both';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11992 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11993
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11994 d3.selectAll(params.root + ' .toggle_' + inst_rc + '_order .btn').classed('active', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11995
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11996 var order_id = this.__data__.replace('-', '_') + '_index';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11997 if (params.viz.sim_mat) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11998 all_reorder(cgm, order_id, 'row');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	11999 all_reorder(cgm, order_id, 'col');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12000 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12001 all_reorder(cgm, order_id, inst_rc);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12002 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12003 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12004 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12005 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12006 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12007
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12008 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12009 /* 115 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12010 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12011
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12012 var toggle_dendro_view = __webpack_require__(54);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12013 var show_visible_area = __webpack_require__(106);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12014 var ini_zoom_info = __webpack_require__(36);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12015 var calc_downsampled_levels = __webpack_require__(27);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12016 var two_translate_zoom = __webpack_require__(116);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12017 var get_previous_zoom = __webpack_require__(101);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12018
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12019 module.exports = function (cgm, inst_order, inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12020
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12021 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12022
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12023 var prev_zoom = get_previous_zoom(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12024
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12025 var delay_reorder = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12026 if (prev_zoom.zoom_y != 1 \|\| prev_zoom.zoom_x != 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12027 // reset zoom before reordering
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12028 two_translate_zoom(cgm, 0, 0, 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12029 delay_reorder = 1200;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12030 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12031
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12032 // row/col names are swapped, will improve later
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12033 var other_rc;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12034 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12035 other_rc = 'col';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12036 } else if (inst_rc === 'col') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12037 other_rc = 'row';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12038 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12039
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12040 params.viz.run_trans = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12041
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12042 // save order state
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12043 if (other_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12044 params.viz.inst_order.row = inst_order;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12045 } else if (other_rc === 'col') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12046 params.viz.inst_order.col = inst_order;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12047 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12048
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12049 if (params.viz.show_dendrogram) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12050 toggle_dendro_view(cgm, inst_rc);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12051 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12052
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12053 if (other_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12054 params.viz.x_scale.domain(params.matrix.orders[params.viz.inst_order.row + '_row']);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12055 } else if (other_rc == 'col') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12056 params.viz.y_scale.domain(params.matrix.orders[params.viz.inst_order.col + '_col']);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12057 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12058
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12059 // only animate transition if there are a small number of tiles
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12060 var t;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12061 if (d3.selectAll(params.root + ' .tile')[0].length < params.matrix.def_large_matrix) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12062 t = d3.select(params.root + ' .viz_svg').transition().duration(2500).delay(delay_reorder);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12063 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12064 t = d3.select(params.root + ' .viz_svg');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12065 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12066
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12067 var row_nodes_names = params.network_data.row_nodes_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12068 var col_nodes_names = params.network_data.col_nodes_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12069
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12070 // only update matrix if not downsampled (otherwise rows are updated)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12071 if (params.viz.ds_level === -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12072
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12073 t.selectAll('.row').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12074 var inst_index = _.indexOf(row_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12075 return 'translate(0,' + params.viz.y_scale(inst_index) + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12076 }).selectAll('.tile').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12077 return 'translate(' + params.viz.x_scale(d.pos_x) + ' , 0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12078 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12079
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12080 t.selectAll('.tile_up').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12081 return 'translate(' + params.viz.x_scale(d.pos_x) + ' , 0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12082 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12083
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12084 t.selectAll('.tile_dn').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12085 return 'translate(' + params.viz.x_scale(d.pos_x) + ' , 0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12086 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12087 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12088
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12089 // Move Row Labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12090 t.select('.row_label_zoom_container').selectAll('.row_label_group').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12091 var inst_index = _.indexOf(row_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12092 return 'translate(0,' + params.viz.y_scale(inst_index) + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12093 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12094
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12095 // Move Col Labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12096 t.select('.col_zoom_container').selectAll('.col_label_text').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12097 var inst_index = _.indexOf(col_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12098 return 'translate(' + params.viz.x_scale(inst_index) + ') rotate(-90)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12099 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12100
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12101 // reorder row categories
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12102 t.selectAll('.row_cat_group').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12103 var inst_index = _.indexOf(row_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12104 return 'translate(0,' + params.viz.y_scale(inst_index) + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12105 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12106
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12107 // reorder col_class groups
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12108 t.selectAll('.col_cat_group').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12109 var inst_index = _.indexOf(col_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12110 return 'translate(' + params.viz.x_scale(inst_index) + ',0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12111 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12112
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12113 // redefine x and y positions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12114 params.network_data.links.forEach(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12115 d.x = params.viz.x_scale(d.target);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12116 d.y = params.viz.y_scale(d.source);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12117 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12118
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12119 params.zoom_info = ini_zoom_info();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12120
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12121 // calculate downsmapling if necessary
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12122 if (params.viz.ds_num_levels > 0 && params.viz.ds_level >= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12123
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12124 calc_downsampled_levels(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12125 var zooming_stopped = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12126 var zooming_out = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12127 var make_all_rows = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12128
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12129 // show_visible_area is also run with two_translate_zoom, but at that point
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12130 // the parameters were not updated and two_translate_zoom if only run
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12131 // if needed to reset zoom
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12132 show_visible_area(cgm, zooming_stopped, zooming_out, make_all_rows);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12133 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12134
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12135 setTimeout(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12136 params.viz.run_trans = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12137 }, 2500);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12138 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12139
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12140 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12141 /* 116 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12142 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12143
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12144 var utils = __webpack_require__(2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12145 var label_constrain_and_trim = __webpack_require__(117);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12146 var show_visible_area = __webpack_require__(106);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12147 var ini_zoom_info = __webpack_require__(36);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12148 var toggle_grid_lines = __webpack_require__(121);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12149
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12150 module.exports = function two_translate_zoom(cgm, pan_dx, pan_dy, fin_zoom) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12151
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12152 // console.log('pan_dy: ' + String(pan_dy))
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12153
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12154 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12155
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12156 d3.selectAll(params.viz.root_tips).style('display', 'none');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12157
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12158 params.zoom_info = ini_zoom_info();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12159
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12160 show_visible_area(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12161
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12162 // do not allow while transitioning, e.g. reordering
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12163 if (!params.viz.run_trans) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12164
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12165 // define the commonly used variable half_height
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12166 var half_height = params.viz.clust.dim.height / 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12167
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12168 // y pan room, the pan room has to be less than half_height since
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12169 // zooming in on a gene that is near the top of the clustergram also causes
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12170 // panning out of the visible region
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12171 var y_pan_room = half_height / fin_zoom;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12172
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12173 // prevent visualization from panning down too much
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12174 // when zooming into genes near the top of the clustergram
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12175 if (pan_dy >= half_height - y_pan_room) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12176
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12177 // console.log(' prevent visualization from panning down too much')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12178
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12179 // explanation of panning rules
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12180 /////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12181 /*
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12182 prevent the clustergram from panning down too much
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12183 if the amount of panning is equal to the half_height then it needs to be reduced
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12184 effectively, the the visualization needs to be moved up (negative) by some factor
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12185 of the half-width-of-the-visualization.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12186 If there was no zooming involved, then the
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12187 visualization would be centered first, then panned to center the top term
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12188 this would require a
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12189 correction to re-center it. However, because of the zooming the offset is
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12190 reduced by the zoom factor (this is because the panning is occurring on something
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12191 that will be zoomed into - this is why the pan_dy value is not scaled in the two
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12192 translate transformations, but it has to be scaled afterwards to set the translate
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12193 vector)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12194 pan_dy = half_height - (half_height)/fin_zoom
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12195 if pan_dy is greater than the pan room, then panning has to be restricted
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12196 start by shifting back up (negative) by half_height/fin_zoom then shift back down
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12197 by the difference between half_height and pan_dy (so that the top of the clustergram is
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12198 visible)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12199 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12200
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12201 var shift_top_viz = half_height - pan_dy;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12202 var shift_up_viz = -half_height / fin_zoom + shift_top_viz;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12203
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12204 // reduce pan_dy so that the visualization does not get panned to far down
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12205 pan_dy = pan_dy + shift_up_viz;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12206 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12207
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12208 // prevent visualization from panning up too much
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12209 // when zooming into genes at the bottom of the clustergram
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12210 if (pan_dy < -(half_height - y_pan_room)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12211
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12212 shift_top_viz = half_height + pan_dy;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12213
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12214 shift_up_viz = half_height / fin_zoom - shift_top_viz; //- move_up_one_row;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12215
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12216 // reduce pan_dy so that the visualization does not get panned to far down
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12217 pan_dy = pan_dy + shift_up_viz;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12218 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12219
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12220 // will improve this !!
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12221 var zoom_y = fin_zoom;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12222 var zoom_x = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12223
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12224 // search duration - the duration of zooming and panning
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12225 var search_duration = 700;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12226
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12227 // center_y
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12228 var center_y = -(zoom_y - 1) * half_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12229
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12230 // transform clust group
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12231 ////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12232 d3.select(params.root + ' .clust_group').transition().duration(search_duration)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12233 // first apply the margin transformation
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12234 // then zoom, then apply the final transformation
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12235 .attr('transform', 'translate(' + [0, 0 + center_y] + ')' + ' scale(' + zoom_x + ',' + zoom_y + ')' + 'translate(' + [pan_dx, pan_dy] + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12236
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12237 // transform row labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12238 d3.select(params.root + ' .row_label_zoom_container').transition().duration(search_duration).attr('transform', 'translate(' + [0, center_y] + ')' + ' scale(' + zoom_y + ',' + zoom_y + ')' + 'translate(' + [0, pan_dy] + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12239
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12240 // transform row_cat_container
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12241 // use the offset saved in params, only zoom in the y direction
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12242 d3.select(params.root + ' .row_cat_container').transition().duration(search_duration).attr('transform', 'translate(' + [0, center_y] + ')' + ' scale(' + 1 + ',' + zoom_y + ')' + 'translate(' + [0, pan_dy] + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12243
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12244 d3.select(params.root + ' .row_dendro_container').transition().duration(search_duration).attr('transform', 'translate(' + [0, center_y] + ')' + ' scale(' + zoom_x + ',' + zoom_y + ')' + 'translate(' + [params.viz.uni_margin / 2, pan_dy] + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12245
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12246 // toggle crop buttons
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12247 var inst_button_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12248 _.each(['row', 'col'], function (inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12249
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12250 inst_button_opacity = d3.select(params.root + ' .' + inst_rc + '_dendro_crop_buttons').style('opacity');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12251 d3.selectAll(params.root + ' .' + inst_rc + '_dendro_crop_buttons').style('opacity', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12252 setTimeout(show_crop_buttons, 700, inst_rc, inst_button_opacity);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12253 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12254
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12255 // transform col labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12256 d3.select(params.root + ' .col_zoom_container').transition().duration(search_duration).attr('transform', ' scale(' + zoom_x + ',' + zoom_x + ')' + 'translate(' + [pan_dx, 0] + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12257
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12258 // transform col_class
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12259 d3.select(params.root + ' .col_cat_container').transition().duration(search_duration).attr('transform', ' scale(' + zoom_x + ',' + 1 + ')' + 'translate(' + [pan_dx, 0] + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12260
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12261 d3.select(params.root + ' .col_dendro_container').transition().duration(search_duration).attr('transform', ' scale(' + zoom_x + ',' + 1 + ')' + 'translate(' + [pan_dx, params.viz.uni_margin / 2] + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12262
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12263 // set y translate: center_y is positive, positive moves the visualization down
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12264 // the translate vector has the initial margin, the first y centering, and pan_dy
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12265 // times the scaling zoom_y
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12266 var net_y_offset = params.viz.clust.margin.top + center_y + pan_dy * zoom_y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12267 var net_x_offset = params.viz.clust.margin.left + pan_dx;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12268
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12269 // reset the zoom and translate
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12270 params.zoom_behavior.scale(zoom_y).translate([net_x_offset, net_y_offset]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12271
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12272 label_constrain_and_trim(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12273
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12274 // re-size of the highlighting rects
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12275 /////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12276 if (d3.select(params.root + ' .row_label_zoom_container text').empty() === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12277 d3.select(params.root + ' .row_label_zoom_container').each(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12278 // get the bounding box of the row label text
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12279 var bbox = d3.select(this).select('text')[0][0].getBBox();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12280
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12281 // use the bounding box to set the size of the rect
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12282 d3.select(this).select('rect').attr('x', bbox.x * 0.5).attr('y', 0).attr('width', bbox.width * 0.5).attr('height', params.viz.y_scale.rangeBand()).style('fill', 'yellow');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12283 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12284 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12285
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12286 // reset crop button zooming
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12287 d3.select(params.root + ' .row_dendro_icons_group').attr('transform', 'translate(' + [0, 0 + center_y] + ')' + ' scale(' + zoom_x + ',' + zoom_y + ')' + 'translate(' + [pan_dx, pan_dy] + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12288
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12289 d3.select(params.root + ' .row_dendro_icons_group').selectAll('path').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12290 var inst_x = params.viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12291 var inst_y = d.pos_mid;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12292 return 'translate(' + inst_x + ',' + inst_y + ') ' + 'scale(1, ' + 1 / zoom_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12293 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12294
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12295 // console.log('zooming x and y')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12296 // console.log(zoom_x)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12297 // console.log(zoom_y)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12298
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12299 // need to improve behavior
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12300 d3.select(params.root + ' .col_dendro_icons_group').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12301 var inst_trans =
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12302 // 'translate(' + [0, 0 + center_y] + ')' +
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12303 ' scale(' + zoom_x + ',' + zoom_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12304 // + 'translate(' + [pan_dx, pan_dy ] + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12305 return inst_trans;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12306 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12307
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12308 d3.select(params.root + ' .col_dendro_icons_group').selectAll('path').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12309 var inst_x = d.pos_mid;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12310 var inst_y = params.viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12311 // return 'translate('+ inst_x +',' + inst_y + ') ' + 'scale('+1/zoom_x+',1)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12312 return 'translate(' + inst_x + ',' + inst_y + ') ' + 'scale(1,1)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12313 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12314
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12315 // column value bars
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12316 ///////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12317 // reduce the height of the column value bars based on the zoom applied
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12318 // recalculate the height and divide by the zooming scale
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12319 // col_label_obj.select('rect')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12320 if (utils.has(params.network_data.col_nodes[0], 'value')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12321
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12322 d3.selectAll(params.root + ' .col_bars').attr('width', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12323 var inst_value = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12324 if (d.value > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12325 inst_value = params.labels.bar_scale_col(d.value) / zoom_x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12326 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12327 return inst_value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12328 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12329 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12330
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12331 if (utils.has(params.network_data.row_nodes[0], 'value')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12332
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12333 d3.selectAll(params.root + ' .row_bars').transition().duration(search_duration).attr('width', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12334 var inst_value = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12335 inst_value = params.labels.bar_scale_row(Math.abs(d.value)) / zoom_y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12336 return inst_value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12337 }).attr('x', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12338 var inst_value = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12339 inst_value = -params.labels.bar_scale_row(Math.abs(d.value)) / zoom_y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12340 return inst_value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12341 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12342 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12343
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12344 toggle_grid_lines(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12345 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12346
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12347 function show_crop_buttons(inst_rc, inst_button_opacity) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12348 d3.selectAll(params.root + ' .' + inst_rc + '_dendro_crop_buttons').transition().duration(search_duration).style('opacity', inst_button_opacity);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12349 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12350 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12351
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12352 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12353 /* 117 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12354 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12355
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12356 var utils = __webpack_require__(2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12357 var trim_text = __webpack_require__(118);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12358 var constrain_font_size = __webpack_require__(119);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12359
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12360 module.exports = function label_constrain_and_trim(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12361
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12362 // console.log('label_constrain_and_trim');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12363
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12364 // reset text in rows and columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12365 d3.selectAll(params.root + ' .row_label_group').select('text').text(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12366 return utils.normal_name(d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12367 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12368
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12369 d3.selectAll(params.root + ' .col_label_text').select('text').text(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12370 return utils.normal_name(d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12371 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12372
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12373 constrain_font_size(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12374
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12375 d3.selectAll(params.root + ' .row_label_group').each(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12376 trim_text(params, this, 'row');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12377 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12378
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12379 d3.selectAll(params.root + ' .col_label_group').each(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12380 trim_text(params, this, 'col');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12381 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12382 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12383
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12384 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12385 /* 118 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12386 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12387
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12388
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12389 module.exports = function (params, inst_selection, inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12390 if (d3.select(inst_selection).style('display') != 'none') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12391
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12392 // trim text that is longer than the container
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12393 var inst_zoom;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12394 var inst_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12395 var trimmed_text;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12396 var current_num_char;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12397 var inst_text;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12398 var original_text;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12399 var keep_num_char;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12400 var i;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12401
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12402 var max_width = params.viz.norm_labels.width[inst_rc];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12403
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12404 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12405 if (params.viz.zoom_ratio.y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12406 inst_zoom = params.zoom_behavior.scale() / params.viz.zoom_ratio.y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12407 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12408 inst_zoom = params.zoom_behavior.scale();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12409 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12410 // num_trims = params.labels.row_max_char;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12411 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12412 if (params.viz.zoom_ratio.x > 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12413 inst_zoom = params.zoom_behavior.scale() / params.viz.zoom_ratio.x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12414 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12415 inst_zoom = params.zoom_behavior.scale();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12416 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12417 // num_trims = params.labels.col_max_char;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12418 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12419
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12420 var num_trims;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12421 d3.select(inst_selection).select('text').each(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12422 num_trims = d.name.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12423 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12424
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12425 var tmp_width = d3.select(inst_selection).select('text').node().getBBox().width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12426
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12427 inst_width = calc_width(tmp_width, inst_zoom);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12428
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12429 if (inst_width > max_width) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12430
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12431 for (i = 1; i < num_trims; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12432 if (inst_width > max_width) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12433
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12434 d3.select(inst_selection).select('text').text(trim);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12435
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12436 tmp_width = d3.select(inst_selection).select('text').node().getBBox().width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12437
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12438 inst_width = calc_width(tmp_width, inst_zoom);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12439 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12440 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12441 } else if (inst_width < max_width * 0.75) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12442
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12443 for (i = 1; i < num_trims; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12444 if (inst_width < max_width * 0.75) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12445
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12446 d3.select(inst_selection).select('text').text(add_back);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12447
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12448 tmp_width = d3.select(inst_selection).select('text').node().getBBox().width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12449
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12450 inst_width = calc_width(tmp_width, inst_zoom);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12451 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12452 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12453 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12454 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12455
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12456 function trim() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12457 inst_text = d3.select(this).text();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12458 current_num_char = inst_text.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12459 keep_num_char = current_num_char - 3;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12460 trimmed_text = inst_text.substring(0, keep_num_char) + '..';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12461 return trimmed_text;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12462 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12463
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12464 function add_back(d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12465 inst_text = d3.select(this).text();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12466 if (inst_text.slice(-2) === '..') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12467 current_num_char = inst_text.length - 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12468 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12469 current_num_char = inst_text.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12470 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12471
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12472 original_text = d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12473 keep_num_char = current_num_char + 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12474 trimmed_text = original_text.substring(0, keep_num_char) + '..';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12475
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12476 // if '..' was added to original text
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12477 if (trimmed_text.length > original_text.length) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12478 trimmed_text = original_text;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12479 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12480
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12481 return trimmed_text;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12482 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12483
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12484 function calc_width(tmp_width, inst_zoom) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12485 if (inst_zoom < 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12486 inst_width = tmp_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12487 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12488 inst_width = tmp_width * inst_zoom;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12489 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12490
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12491 return inst_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12492 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12493 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12494
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12495 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12496 /* 119 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12497 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12498
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12499 var calc_real_font_size = __webpack_require__(120);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12500
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12501 module.exports = function constrain_font_size(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12502
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12503 var tmp_font_size = params.labels.default_fs_row;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12504 var inst_zoom;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12505 var min_font_size = 3;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12506
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12507 var real_font_size = calc_real_font_size(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12508
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12509 // rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12510 ////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12511 if (real_font_size.row > min_font_size) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12512
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12513 if (real_font_size.row > params.labels.max_allow_fs) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12514
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12515 if (params.viz.zoom_ratio.y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12516 inst_zoom = params.zoom_behavior.scale() / params.viz.zoom_ratio.y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12517 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12518 inst_zoom = params.zoom_behavior.scale();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12519 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12520
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12521 if (inst_zoom < 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12522 inst_zoom = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12523 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12524
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12525 tmp_font_size = params.labels.max_allow_fs / inst_zoom;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12526
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12527 d3.selectAll(params.root + ' .row_label_group').select('text').style('font-size', tmp_font_size + 'px').attr('y', params.viz.rect_height * 0.5 + tmp_font_size * 0.35);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12528 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12529 d3.selectAll(params.root + ' .row_label_group').select('text').style('font-size', params.labels.default_fs_row + 'px').attr('y', params.viz.rect_height * 0.5 + params.labels.default_fs_row * 0.35);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12530 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12531 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12532
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12533 // columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12534 //////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12535 if (real_font_size.col > min_font_size) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12536
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12537 if (real_font_size.col > params.labels.max_allow_fs) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12538
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12539 if (params.viz.zoom_ratio.x > 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12540 inst_zoom = params.zoom_behavior.scale() / params.viz.zoom_ratio.x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12541 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12542 inst_zoom = params.zoom_behavior.scale();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12543 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12544
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12545 if (inst_zoom < 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12546 inst_zoom = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12547 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12548
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12549 tmp_font_size = params.labels.max_allow_fs / inst_zoom;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12550
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12551 if (tmp_font_size > 0.7 * params.viz.rect_width) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12552 tmp_font_size = 0.7 * params.viz.rect_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12553 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12554
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12555 d3.selectAll(params.root + ' .col_label_text').select('text').style('font-size', tmp_font_size + 'px');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12556 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12557 d3.selectAll(params.root + ' .col_label_text').select('text').style('font-size', params.labels.default_fs_col + 'px');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12558 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12559 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12560 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12561
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12562 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12563 /* 120 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12564 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12565
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12566 module.exports = function calc_real_font_size(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12567
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12568 var real_font_size = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12569 // zoom_switch behavior has to change with zoom_ratio.y
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12570 if (params.viz.zoom_ratio.x > 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12571 real_font_size.row = params.labels.default_fs_row * params.zoom_behavior.scale();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12572 real_font_size.col = params.labels.default_fs_col * params.zoom_behavior.scale();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12573 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12574 real_font_size.row = params.labels.default_fs_row * params.zoom_behavior.scale() / params.viz.zoom_ratio.y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12575 real_font_size.col = params.labels.default_fs_col * params.zoom_behavior.scale();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12576 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12577
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12578 return real_font_size;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12579 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12580
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12581 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12582 /* 121 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12583 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12584
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12585 module.exports = function toggle_grid_lines(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12586
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12587 if (params.zoom_info.zoom_x * params.viz.border_width.x > 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12588 d3.selectAll(params.root + ' .vert_lines').select('line').style('display', 'block').style('opacity', 0).transition().style('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12589 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12590 d3.selectAll(params.root + ' .vert_lines').select('line').style('display', 'none');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12591 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12592
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12593 if (params.zoom_info.zoom_y * params.viz.border_width.y > 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12594 d3.selectAll(params.root + ' .horz_lines').select('line').style('display', 'block').style('opacity', 0).transition().style('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12595 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12596 d3.selectAll(params.root + ' .horz_lines').select('line').style('display', 'none');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12597 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12598 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12599
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12600 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12601 /* 122 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12602 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12603
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12604 var get_cat_title = __webpack_require__(113);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12605 var d3_tip_custom = __webpack_require__(48);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12606
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12607 module.exports = function make_row_cat_super_labels(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12608
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12609 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12610
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12611 var viz = params.viz;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12612 var extra_x_room = 2.75;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12613
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12614 if (d3.select(params.root + ' .row_cat_label_container').empty()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12615
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12616 d3.select(cgm.params.viz.viz_svg).append('g').classed('row_cat_label_container', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12617
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12618 // append background section for optional value-bars (e.g. enrichment pvals)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12619 d3.select(cgm.params.viz.viz_svg + ' .row_cat_label_container').append('g').classed('row_cat_label_bar_container', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12620 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12621
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12622 var x_offset = viz.clust.margin.left + viz.clust.dim.width + viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12623 var y_offset = viz.norm_labels.margin.top + viz.norm_labels.width.col + 2.5 * viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12624 var cat_text_size = 1.15 * viz.cat_room.symbol_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12625 var cat_super_opacity = 0.65;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12626 var extra_y_room = 1.25;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12627
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12628 d3.select(params.root + ' .row_cat_label_container').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12629 x_offset = viz.norm_labels.margin.left + viz.norm_labels.width.row + viz.cat_room.symbol_width + extra_x_room * viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12630 y_offset = viz.clust.margin.top - viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12631 return 'translate(' + x_offset + ',' + y_offset + ') rotate(-90)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12632 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12633
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12634 // clear old categories
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12635 d3.selectAll(params.root + ' .row_cat_label_container text').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12636 d3.selectAll(params.root + ' .row_cat_selection_bar').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12637 // d3.selectAll(params.root+' .row_cat_label_bar_container rect').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12638
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12639 // remove any old row_cat_super tooltips from this visualization
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12640 d3.selectAll(cgm.params.viz.root_tips + '_row_cat_super').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12641
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12642 // d3-tooltip
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12643 var tmp_y_offset = 50; // viz.clust.margin.top - viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12644 var tmp_x_offset = -75;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12645 var cat_tip = d3_tip_custom().attr('class', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12646 var root_tip_selector = params.viz.root_tips.replace('.', '');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12647 var class_string = root_tip_selector + ' d3-tip ' + root_tip_selector + '_row_cat_super';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12648 return class_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12649 }).direction('south_custom').offset([tmp_y_offset, tmp_x_offset]).style('display', 'none').style('opacity', 0).html(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12650
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12651 var full_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12652
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12653 var tmp_string = params.network_data.row_nodes[0][d];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12654
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12655 if (tmp_string.indexOf('<p>') > -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12656
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12657 var start_string = tmp_string.split(': ')[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12658 var end_string = tmp_string.split('<p>')[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12659
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12660 full_string = start_string + '<p>' + end_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12661 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12662
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12663 full_string = get_cat_title(viz, d, 'row');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12664 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12665
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12666 return full_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12667 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12668
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12669 var unit_length = extra_y_room * viz.cat_room.symbol_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12670 var bar_width = unit_length * 0.9;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12671
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12672 // show row label categories even if viewing a simmilarity matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12673
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12674 d3.select(params.root + ' .row_cat_label_container').selectAll().data(viz.all_cats.row).enter().append('text').style('width', '100px').style('height', bar_width + 'px').classed('row_cat_super', true).style('font-size', cat_text_size + 'px').style('opacity', cat_super_opacity).style('cursor', 'default').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12675 var inst_y = extra_y_room * viz.cat_room.symbol_width * parseInt(d.split('-')[1], 10);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12676 return 'translate(0,' + inst_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12677 }).text(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12678
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12679 return get_cat_title(viz, d, 'row');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12680 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12681
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12682 // selection bar
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12683 ///////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12684 d3.select(params.root + ' .row_cat_label_container').selectAll().data(viz.all_cats.row).enter().append('rect').classed('row_cat_super', true).classed('row_cat_selection_bar', true).style('height', bar_width + 'px').style('fill', 'green').style('width', '120px').style('opacity', 0).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12685 var inst_y = unit_length * (parseInt(d.split('-')[1], 10) - 0.75);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12686 return 'translate(0,' + inst_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12687 }).on('mouseover', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12688
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12689 d3.selectAll(params.viz.root_tips + '_row_cat_super').style('display', 'block').style('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12690
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12691 cat_tip.show(d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12692 }).on('mouseout', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12693 cat_tip.hide(this);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12694 // might not need
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12695 d3.selectAll('.d3-tip').style('display', 'none');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12696
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12697 d3.selectAll(params.viz.root_tips + '_row_cat_super').style('display', 'none').style('opacity', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12698 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12699
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12700 // row category super-label mouseover
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12701 //////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12702 if (d3.select(params.root + ' .row_cat_selection_bar').empty() === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12703 d3.selectAll(params.root + ' .row_cat_selection_bar').call(cat_tip);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12704 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12705
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12706 if (_.has(params.network_data, 'row_cat_bars')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12707
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12708 // Enrichrgram title
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12709 /////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12710 d3.select(params.root + ' .enr_title').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12711
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12712 var enr_title = d3.select(params.root + ' .viz_svg').append('g').classed('enr_title', true).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12713 var trans = d3.select(params.root + ' .row_cat_label_container').attr('transform').split('(')[1].split(')')[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12714 var x_offset = Number(trans.split(',')[0]) - 10;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12715
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12716 return 'translate(' + String(x_offset) + ', 0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12717 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12718
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12719 enr_title.append('rect').attr('width', params.viz.cat_room.row).attr('height', 25).attr('fill', 'white');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12720
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12721 var library_string = params.network_data.enrichrgram_lib.substring(0, 40);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12722
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12723 enr_title.append('text').attr('transform', 'translate(0, 17)').text(library_string.replace(/_/g, ' ')).style('font-size', '15px').attr('font-family', '"Helvetica Neue", Helvetica, Arial, sans-serif');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12724
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12725 // Enrichr bars
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12726 ////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12727 d3.selectAll(params.root + ' .enrichr_bars').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12728
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12729 var bar_height = params.viz.clust.margin.top - 35;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12730 var max_score = params.network_data.row_cat_bars[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12731 var bar_scale = d3.scale.linear().domain([0, max_score]).range([0, bar_height]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12732
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12733 d3.select(params.root + ' .row_cat_label_bar_container').selectAll().data(params.network_data.row_cat_bars).enter().append('rect').classed('enrichr_bars', true).attr('height', bar_width + 'px').attr('fill', 'red').attr('width', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12734 var bar_length = bar_scale(d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12735 return bar_length + 'px';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12736 }).attr('opacity', 0.4).attr('transform', function (d, i) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12737 var inst_y = unit_length * (i - 0.75);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12738 return 'translate(0, ' + inst_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12739 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12740 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12741 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12742
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12743 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12744 /* 123 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12745 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12746
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12747 var resize_viz = __webpack_require__(124);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12748
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12749 module.exports = function initialize_resizing(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12750
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12751 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12752
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12753 var exp_button;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12754
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12755 // d3.select(window).on('resize', null);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12756
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12757 // // resize window
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12758 // if (params.viz.resize) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12759 // d3.select(window).on('resize', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12760
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12761 // d3.select(params.viz.viz_svg).style('opacity', 0.5);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12762
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12763 // var wait_time = 500;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12764 // if (params.viz.run_trans === true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12765 // wait_time = 2500;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12766 // }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12767
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12768 // setTimeout(resize_viz, wait_time, params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12769 // });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12770 // }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12771
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12772 // if (params.viz.expand_button) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12773
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12774 d3.select(params.root + ' .expand_button').on('click', null);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12775 var expand_opacity = 0.4;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12776
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12777 if (d3.select(params.root + ' .expand_button').empty()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12778 exp_button = d3.select(params.viz.viz_svg).append('text').attr('class', 'expand_button');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12779 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12780 exp_button = d3.select(params.root + ' .expand_button');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12781 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12782
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12783 exp_button.attr('text-anchor', 'middle').attr('dominant-baseline', 'central').attr('font-family', 'FontAwesome').attr('font-size', '30px').text(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12784 if (params.viz.is_expand === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12785 // expand button
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12786 return '\uf0b2';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12787 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12788 // menu button
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12789 return '\uf0c9';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12790 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12791 }).attr('y', '25px').attr('x', '25px').style('cursor', 'pointer').style('opacity', expand_opacity).on('mouseover', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12792 d3.select(this).style('opacity', 0.75);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12793 }).on('mouseout', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12794 d3.select(this).style('opacity', expand_opacity);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12795 }).on('click', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12796
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12797 // expand view
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12798 if (params.viz.is_expand === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12799
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12800 d3.select(this).text(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12801 // menu button
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12802 return '\uf0c9';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12803 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12804 params.viz.is_expand = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12805
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12806 d3.selectAll(params.root + ' .borders').style('fill', 'white');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12807 // d3.select(params.root+' .footer_section').style('display', 'none');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12808 d3.select(params.root + ' .sidebar_wrapper').style('display', 'none');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12809
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12810 // contract view
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12811 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12812
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12813 d3.select(this).text(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12814 // expand button
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12815 return '\uf0b2';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12816 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12817
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12818 params.viz.is_expand = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12819
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12820 d3.selectAll(params.root + ' .borders').style('fill', '#eee');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12821 // d3.select(params.root+' .footer_section').style('display', 'block');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12822 d3.select(params.root + ' .viz_wrapper').style('width', '100px');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12823 d3.select(params.root + ' .sidebar_wrapper').style('display', 'block');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12824 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12825
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12826 // // resize parent div
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12827 // set_viz_wrapper_size(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12828
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12829 d3.select(params.viz.viz_svg).style('opacity', 0.5);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12830 var wait_time = 500;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12831 if (params.viz.run_trans == true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12832 wait_time = 2500;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12833 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12834 setTimeout(resize_viz, wait_time, cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12835 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12836 // }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12837 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12838
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12839 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12840 /* 124 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12841 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12842
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12843 var utils = __webpack_require__(2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12844 var run_zoom = __webpack_require__(125);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12845 var ini_doubleclick = __webpack_require__(133);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12846 var reset_zoom = __webpack_require__(134);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12847 var resize_dendro = __webpack_require__(135);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12848 var resize_super_labels = __webpack_require__(136);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12849 var resize_spillover = __webpack_require__(137);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12850 var resize_borders = __webpack_require__(138);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12851 var resize_row_labels = __webpack_require__(139);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12852 var resize_highlights = __webpack_require__(140);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12853 var resize_row_viz = __webpack_require__(141);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12854 var resize_col_labels = __webpack_require__(142);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12855 var resize_col_text = __webpack_require__(143);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12856 var resize_col_triangle = __webpack_require__(144);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12857 var resize_col_hlight = __webpack_require__(145);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12858 var recalc_params_for_resize = __webpack_require__(146);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12859 var resize_row_tiles = __webpack_require__(147);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12860 var resize_label_bars = __webpack_require__(148);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12861 var label_constrain_and_trim = __webpack_require__(117);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12862 var make_dendro_triangles = __webpack_require__(55);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12863 var toggle_dendro_view = __webpack_require__(54);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12864 var show_visible_area = __webpack_require__(106);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12865 var calc_viz_dimensions = __webpack_require__(18);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12866 var position_play_button = __webpack_require__(149);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12867 var make_row_cat_super_labels = __webpack_require__(122);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12868 var ini_cat_reorder = __webpack_require__(114);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12869 var position_svg_dendro_slider = __webpack_require__(150);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12870 var ini_zoom_info = __webpack_require__(36);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12871 var grid_lines_viz = __webpack_require__(151);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12872
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12873 module.exports = function resize_viz(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12874
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12875 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12876
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12877 var cont_dim = calc_viz_dimensions(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12878
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12879 d3.select(params.root + ' .play_button');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12880 // .style('opacity', 0.2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12881
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12882
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12883 d3.select(params.root + ' .sidebar_wrapper').style('height', cont_dim.height + 'px');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12884
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12885 d3.select(params.viz.viz_wrapper)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12886 // .style('float', 'left')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12887 .style('margin-top', cont_dim.top + 'px').style('width', cont_dim.width + 'px').style('height', cont_dim.height + 'px');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12888
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12889 params = recalc_params_for_resize(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12890
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12891 params.zoom_info = ini_zoom_info();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12892
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12893 reset_zoom(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12894
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12895 var svg_group = d3.select(params.viz.viz_svg);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12896
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12897 // redefine x and y positions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12898 _.each(params.network_data.links, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12899 d.x = params.viz.x_scale(d.target);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12900 d.y = params.viz.y_scale(d.source);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12901 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12902
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12903 // disable zoom while transitioning
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12904 svg_group.on('.zoom', null);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12905
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12906 params.zoom_behavior.scaleExtent([1, params.viz.square_zoom * params.viz.zoom_ratio.x]).on('zoom', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12907 run_zoom(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12908 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12909
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12910 // reenable zoom after transition
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12911 if (params.viz.do_zoom) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12912 svg_group.call(params.zoom_behavior);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12913 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12914
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12915 // prevent normal double click zoom etc
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12916 ini_doubleclick(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12917
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12918 svg_group.attr('width', params.viz.svg_dim.width).attr('height', params.viz.svg_dim.height);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12919
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12920 svg_group.select('.super_background').style('width', params.viz.svg_dim.width).style('height', params.viz.svg_dim.height);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12921
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12922 svg_group.select('.grey_background').attr('width', params.viz.clust.dim.width).attr('height', params.viz.clust.dim.height);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12923
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12924 setTimeout(position_play_button, 100, params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12925
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12926 var row_nodes = params.network_data.row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12927 var row_nodes_names = utils.pluck(row_nodes, 'name');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12928
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12929 resize_row_tiles(params, svg_group);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12930
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12931 svg_group.selectAll('.highlighting_rect').attr('width', params.viz.x_scale.rangeBand() * 0.80).attr('height', params.viz.y_scale.rangeBand() * 0.80);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12932
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12933 resize_highlights(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12934
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12935 // resize row labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12936 ///////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12937
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12938 resize_row_labels(params, svg_group);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12939 resize_row_viz(params, svg_group);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12940
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12941 // change the size of the highlighting rects
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12942 svg_group.selectAll('.row_label_group').each(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12943 var bbox = d3.select(this).select('text')[0][0].getBBox();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12944 d3.select(this).select('rect').attr('x', bbox.x).attr('y', 0).attr('width', bbox.width).attr('height', params.viz.rect_height).style('fill', 'yellow').style('opacity', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12945 var inst_opacity = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12946 // highlight target genes
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12947 if (d.target === 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12948 inst_opacity = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12949 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12950 return inst_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12951 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12952 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12953
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12954 // necessary to properly position row labels vertically
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12955 svg_group.selectAll('.row_label_group').select('text').attr('y', params.viz.rect_height * 0.5 + params.labels.default_fs_row * 0.35);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12956
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12957 if (utils.has(params.network_data.row_nodes[0], 'value')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12958 resize_label_bars(cgm, svg_group);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12959 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12960
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12961 svg_group.selectAll('.row_cat_group').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12962 var inst_index = _.indexOf(row_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12963 return 'translate(0, ' + params.viz.y_scale(inst_index) + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12964 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12965
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12966 svg_group.selectAll('.row_cat_group').select('path').attr('d', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12967 var origin_x = params.viz.cat_room.symbol_width - 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12968 var origin_y = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12969 var mid_x = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12970 var mid_y = params.viz.rect_height / 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12971 var final_x = params.viz.cat_room.symbol_width - 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12972 var final_y = params.viz.rect_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12973 var output_string = 'M ' + origin_x + ',' + origin_y + ' L ' + mid_x + ',' + mid_y + ', L ' + final_x + ',' + final_y + ' Z';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12974 return output_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12975 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12976
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12977 var is_resize = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12978 if (params.viz.show_dendrogram) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12979 make_dendro_triangles(cgm, 'row', is_resize);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12980 make_dendro_triangles(cgm, 'col', is_resize);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12981 resize_dendro(params, svg_group);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12982
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12983 toggle_dendro_view(cgm, 'row', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12984 toggle_dendro_view(cgm, 'col', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12985 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12986 resize_dendro(params, svg_group);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12987 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12988
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12989 resize_col_labels(params, svg_group);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12990 resize_col_text(params, svg_group);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12991 resize_col_triangle(params, svg_group);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12992 resize_col_hlight(params, svg_group);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12993
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12994 resize_super_labels(params, svg_group);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12995 resize_spillover(params.viz, svg_group);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12996
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12997 grid_lines_viz(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12998
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	12999 resize_borders(params, svg_group);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13000
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13001 // reset zoom and translate
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13002 params.zoom_behavior.scale(1).translate([params.viz.clust.margin.left, params.viz.clust.margin.top]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13003
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13004 label_constrain_and_trim(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13005
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13006 // reposition matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13007 d3.select(params.root + ' .clust_container').attr('transform', 'translate(' + params.viz.clust.margin.left + ',' + params.viz.clust.margin.top + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13008
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13009 // removed, this was causing bugs
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13010 if (cgm.params.viz.ds_level === -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13011 show_visible_area(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13012 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13013
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13014 make_row_cat_super_labels(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13015
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13016 d3.select(params.viz.viz_svg).style('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13017
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13018 ini_cat_reorder(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13019
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13020 d3.select(cgm.params.root + ' .row_slider_group').style('opacity', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13021 d3.select(cgm.params.root + ' .col_slider_group').style('opacity', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13022
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13023 setTimeout(position_svg_dendro_slider, 500, cgm, 'row');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13024 setTimeout(position_svg_dendro_slider, 500, cgm, 'col');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13025 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13026
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13027 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13028 /* 125 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13029 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13030
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13031 var run_transformation = __webpack_require__(126);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13032 var zoom_rules_y = __webpack_require__(131);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13033 var zoom_rules_x = __webpack_require__(132);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13034
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13035 module.exports = function zoomed(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13036
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13037 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13038
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13039 var zoom_info = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13040 zoom_info.zoom_x = d3.event.scale;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13041 zoom_info.zoom_y = d3.event.scale;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13042
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13043 // subtract away the margin to easily calculate pan_room etc.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13044 zoom_info.trans_x = params.zoom_behavior.translate()[0] - params.viz.clust.margin.left;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13045 zoom_info.trans_y = params.zoom_behavior.translate()[1] - params.viz.clust.margin.top;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13046
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13047 d3.selectAll(params.viz.root_tips).style('display', 'none');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13048
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13049 // transfer zoom_info to params
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13050 params.zoom_info = zoom_rules_y(params, zoom_info);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13051 params.zoom_info = zoom_rules_x(params, zoom_info);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13052
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13053 // do not run transformation if moving slider
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13054 if (params.is_slider_drag === false && params.is_cropping === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13055
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13056 // reset translate vector - add back margins to trans_x and trans_y
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13057 var new_x = params.zoom_info.trans_x + params.viz.clust.margin.left;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13058 var new_y = params.zoom_info.trans_y + params.viz.clust.margin.top;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13059
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13060 params.zoom_behavior.translate([new_x, new_y]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13061 cgm.params = params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13062
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13063 run_transformation(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13064 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13065 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13066
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13067 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13068 /* 126 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13069 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13070
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13071 var constrain_font_size = __webpack_require__(119);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13072 var show_visible_area = __webpack_require__(106);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13073 var resize_label_val_bars = __webpack_require__(127);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13074 var zoom_crop_triangles = __webpack_require__(62);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13075 var get_previous_zoom = __webpack_require__(101);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13076 var run_when_zoom_stopped = __webpack_require__(128);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13077 var check_zoom_stop_status = __webpack_require__(130);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13078
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13079 module.exports = function run_transformation(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13080
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13081 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13082
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13083 var zoom_info = params.zoom_info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13084
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13085 var prev_zoom = get_previous_zoom(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13086
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13087 d3.select(params.root + ' .clust_group').attr('transform', 'translate(' + [zoom_info.trans_x, zoom_info.trans_y] + ') scale(' + zoom_info.zoom_x + ',' + zoom_info.zoom_y + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13088
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13089 d3.select(params.root + ' .row_label_zoom_container').attr('transform', 'translate(' + [0, zoom_info.trans_y] + ') scale(' + zoom_info.zoom_y + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13090
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13091 d3.select(params.root + ' .col_zoom_container').attr('transform', 'translate(' + [zoom_info.trans_x, 0] + ') scale(' + zoom_info.zoom_x + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13092
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13093 d3.select(params.root + ' .row_cat_container').attr('transform', 'translate(' + [0, zoom_info.trans_y] + ') scale( 1,' + zoom_info.zoom_y + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13094
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13095 d3.select(params.root + ' .row_dendro_container').attr('transform', 'translate(' + [params.viz.uni_margin / 2, zoom_info.trans_y] + ') ' + 'scale( 1,' + zoom_info.zoom_y + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13096
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13097 d3.select(params.root + ' .row_dendro_icons_group').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13098 var inst_y = zoom_info.trans_y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13099 var inst_translate = 'translate(' + [0, inst_y] + ') ';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13100 var inst_zoom = 'scale(1, ' + zoom_info.zoom_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13101 var transform_string = inst_translate + inst_zoom;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13102 return transform_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13103 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13104
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13105 d3.select(params.root + ' .col_dendro_icons_group').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13106 var inst_x = zoom_info.trans_x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13107 var inst_translate = 'translate(' + [inst_x, 0] + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13108 var inst_zoom = 'scale(' + zoom_info.zoom_x + ', 1)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13109 var transform_string = inst_translate + inst_zoom;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13110 return transform_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13111 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13112
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13113 zoom_crop_triangles(params, zoom_info, 'row');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13114 zoom_crop_triangles(params, zoom_info, 'col');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13115
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13116 d3.select(params.root + ' .col_cat_container').attr('transform', 'translate(' + [zoom_info.trans_x, 0] + ') scale(' + zoom_info.zoom_x + ',1)');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13117
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13118 d3.select(params.root + ' .col_dendro_container').attr('transform', 'translate(' + [zoom_info.trans_x, params.viz.uni_margin / 2] + ') scale(' + zoom_info.zoom_x + ',1)');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13119
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13120 resize_label_val_bars(params, zoom_info);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13121
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13122 d3.select(params.root + ' .viz_svg').attr('is_zoom', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13123 var inst_zoom = Number(d3.select(params.root + ' .viz_svg').attr('is_zoom'));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13124 d3.select(params.root + ' .viz_svg').attr('stopped_zoom', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13125 return inst_zoom + 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13126 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13127
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13128 // this function runs with a slight delay and tells the visualization that
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13129 // this particular zoom event is over, reducing the total number of zoom
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13130 // events that need to finish
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13131 var not_zooming = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13132
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13133 d3.select(params.root + ' .viz_svg').attr('is_zoom', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13134 var inst_zoom = Number(d3.select(params.root + ' .viz_svg').attr('is_zoom'));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13135 return inst_zoom - 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13136 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13137 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13138
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13139 constrain_font_size(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13140
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13141 if (zoom_info.zoom_y <= prev_zoom.zoom_y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13142
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13143 var zooming_out = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13144 if (zoom_info.zoom_y < prev_zoom.zoom_y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13145 zooming_out = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13146 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13147
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13148 // zooming has not stopped and zooming out is true
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13149 var zooming_stopped = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13150 show_visible_area(cgm, zooming_stopped, zooming_out);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13151 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13152
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13153 setTimeout(not_zooming, 50);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13154 setTimeout(check_if_zooming_has_stopped, 100, cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13155
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13156 function check_if_zooming_has_stopped(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13157 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13158
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13159 var stop_attributes = check_zoom_stop_status(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13160
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13161 if (stop_attributes === true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13162 // wait and double check that zooming has stopped
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13163 setTimeout(run_when_zoom_stopped, 50, cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13164 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13165 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13166 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13167
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13168 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13169 /* 127 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13170 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13171
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13172 var utils = __webpack_require__(2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13173
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13174 module.exports = function resize_label_val_bars(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13175
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13176 var zoom_info = params.zoom_info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13177
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13178 // resize label bars if necessary
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13179 if (utils.has(params.network_data.row_nodes[0], 'value')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13180 d3.selectAll(params.root + ' .row_bars').attr('width', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13181 var inst_value = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13182 inst_value = params.labels.bar_scale_row(Math.abs(d.value)) / zoom_info.zoom_y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13183 return inst_value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13184 }).attr('x', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13185 var inst_value = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13186 inst_value = -params.labels.bar_scale_row(Math.abs(d.value)) / zoom_info.zoom_y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13187 return inst_value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13188 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13189 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13190
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13191 if (utils.has(params.network_data.col_nodes[0], 'value')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13192 d3.selectAll(params.root + ' .col_bars').attr('width', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13193 var inst_value = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13194 if (d.value > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13195 inst_value = params.labels.bar_scale_col(d.value) / zoom_info.zoom_x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13196 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13197 return inst_value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13198 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13199 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13200 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13201
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13202 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13203 /* 128 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13204 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13205
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13206 var constrain_font_size = __webpack_require__(119);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13207 var trim_text = __webpack_require__(118);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13208 var num_visible_labels = __webpack_require__(129);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13209 var toggle_grid_lines = __webpack_require__(121);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13210 var show_visible_area = __webpack_require__(106);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13211 var check_zoom_stop_status = __webpack_require__(130);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13212
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13213 module.exports = function run_when_zoom_stopped(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13214
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13215 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13216
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13217 var stop_attributes = check_zoom_stop_status(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13218
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13219 if (stop_attributes === true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13220
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13221 // ///////////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13222 // // zooming has stopped
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13223 // ///////////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13224 // console.log('\nZOOMING HAS ACTUALLY STOPPED\n============================');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13225 // console.log(params.zoom_info.zoom_y)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13226
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13227 _.each(['row', 'col'], function (inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13228
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13229 d3.selectAll(params.root + ' .' + inst_rc + '_label_group').select('text').style('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13230
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13231 d3.selectAll(params.root + ' .' + inst_rc + '_cat_group').select('path').style('display', 'block');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13232 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13233
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13234 show_visible_area(cgm, true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13235
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13236 d3.selectAll(params.viz.root_tips).style('display', 'block');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13237
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13238 d3.selectAll(params.root + ' .row_label_group').select('text').style('display', 'none');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13239 d3.selectAll(params.root + ' .row_label_group').select('text').style('display', 'block');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13240
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13241 d3.select(params.root + ' .viz_svg').attr('stopped_zoom', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13242
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13243 d3.selectAll(params.root + ' .row_label_group').select('text').style('display', 'block');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13244 d3.selectAll(params.root + ' .col_label_group').select('text').style('display', 'block');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13245
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13246 toggle_grid_lines(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13247
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13248 // reset x_offset
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13249 cgm.params.viz.x_offset = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13250
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13251 var max_labels_to_trim = 150;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13252 // probably do not need
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13253 /////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13254 _.each(['row', 'col'], function (inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13255
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13256 var inst_num_visible = num_visible_labels(params, inst_rc);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13257
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13258 if (inst_num_visible < max_labels_to_trim) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13259 d3.selectAll(params.root + ' .' + inst_rc + '_label_group').each(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13260 trim_text(params, this, inst_rc);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13261 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13262 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13263 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13264
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13265 text_patch();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13266
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13267 constrain_font_size(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13268
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13269 // this makes sure that the text is visible after zooming and trimming
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13270 // there is buggy behavior in chrome when zooming into large matrices
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13271 // I'm running it twice in quick succession
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13272 setTimeout(text_patch, 100);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13273 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13274
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13275 function text_patch() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13276
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13277 _.each(['row', 'col'], function (inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13278
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13279 d3.selectAll(params.root + ' .' + inst_rc + '_label_group').filter(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13280 return d3.select(this).style('display') != 'none';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13281 }).select('text').style('font-size', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13282 var inst_fs = Number(d3.select(this).style('font-size').replace('px', ''));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13283 return inst_fs;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13284 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13285 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13286 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13287 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13288
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13289 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13290 /* 129 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13291 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13292
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13293 module.exports = function num_visible_labels(params, inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13294
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13295 // counting the number of visible labels, probably not necessary
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13296
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13297 var num_visible;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13298 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13299
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13300 // initialize at high number
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13301 num_visible = 10000;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13302
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13303 // only count visible rows if no downsampling
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13304 if (params.viz.ds_level === -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13305 num_visible = d3.selectAll(params.root + ' .row')[0].length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13306 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13307 } else if (inst_rc === 'col') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13308
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13309 num_visible = d3.selectAll(params.root + ' .' + inst_rc + '_label_text').filter(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13310 return d3.select(this).style('display') != 'none';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13311 })[0].length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13312 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13313
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13314 return num_visible;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13315 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13316
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13317 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13318 /* 130 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13319 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13320
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13321 module.exports = function check_zoom_stop_status(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13322
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13323 var inst_zoom = Number(d3.select(params.root + ' .viz_svg').attr('is_zoom'));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13324
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13325 var check_stop = Number(d3.select(params.root + ' .viz_svg').attr('stopped_zoom'));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13326
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13327 var stop_attributes = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13328 if (inst_zoom === 0 && check_stop != 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13329 stop_attributes = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13330 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13331
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13332 return stop_attributes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13333 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13334
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13335 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13336 /* 131 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13337 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13338
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13339 module.exports = function zoom_rules_y(params, zoom_info) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13340
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13341 var viz = params.viz;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13342 // zoom in the x direction before zooming in the y direction
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13343 if (viz.zoom_ratio.y > 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13344 if (zoom_info.zoom_y < viz.zoom_ratio.y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13345 zoom_info.trans_y = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13346 zoom_info.zoom_y = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13347 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13348 zoom_info.zoom_y = zoom_info.zoom_y / viz.zoom_ratio.y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13349 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13350 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13351
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13352 // calculate panning room available in the y direction
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13353 zoom_info.pan_room_y = (zoom_info.zoom_y - 1) * viz.clust.dim.height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13354
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13355 // console.log( 'pan_room_y: ' + String(zoom_info.pan_room_y) + ' ' + String(-zoom_info.trans_y))
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13356
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13357 // no positive panning or panning more than pan_room
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13358 if (zoom_info.trans_y >= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13359 zoom_info.trans_y = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13360 // console.log('y no positive panning\n\n')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13361 } else if (zoom_info.trans_y <= -zoom_info.pan_room_y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13362 zoom_info.trans_y = -zoom_info.pan_room_y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13363 // console.log('y restrict pan room \n\n')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13364 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13365
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13366 return zoom_info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13367 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13368
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13369 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13370 /* 132 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13371 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13372
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13373 module.exports = function zoom_rules_x(params, zoom_info) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13374
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13375 var viz = params.viz;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13376
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13377 // zoom in the y direction before zooming in the x direction
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13378 if (viz.zoom_ratio.x > 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13379
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13380 if (zoom_info.zoom_x < viz.zoom_ratio.x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13381
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13382 // remove this
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13383 // zoom_info.trans_x = - params.viz.clust.margin.left;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13384
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13385 zoom_info.zoom_x = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13386 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13387 zoom_info.zoom_x = zoom_info.zoom_x / viz.zoom_ratio.x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13388
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13389 // console.log('********* zoom_x: ' + String(zoom_info.zoom_x))
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13390
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13391 // zoom_info.trans_x = zoom_info.trans_x + params.viz.x_offset;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13392 // zoom_info.trans_x = zoom_info.trans_x * (params.zoom_info.zoom_x/params.zoom_info.zoom_y);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13393 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13394 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13395
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13396 // calculate panning room available in the x direction
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13397 zoom_info.pan_room_x = (zoom_info.zoom_x - 1) * viz.clust.dim.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13398
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13399 // console.log( 'pan_room_x: ' + String(zoom_info.pan_room_x) + ' trans_x: ' + String(-zoom_info.trans_x))
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13400
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13401 // no positive panning or panning more than pan_room
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13402 if (zoom_info.trans_x > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13403 zoom_info.trans_x = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13404 // console.log('no positive panning\n\n')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13405 } else if (zoom_info.trans_x <= -zoom_info.pan_room_x) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13406 zoom_info.trans_x = -zoom_info.pan_room_x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13407 // console.log('******* restrict pan room\n\n')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13408 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13409
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13410 return zoom_info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13411 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13412
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13413 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13414 /* 133 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13415 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13416
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13417 var two_translate_zoom = __webpack_require__(116);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13418
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13419 module.exports = function ini_doubleclick(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13420
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13421 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13422 // disable double-click zoom
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13423 d3.selectAll(params.viz.zoom_element).on('dblclick.zoom', null);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13424
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13425 d3.select(params.viz.zoom_element).on('dblclick', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13426 two_translate_zoom(cgm, 0, 0, 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13427 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13428 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13429
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13430 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13431 /* 134 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13432 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13433
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13434 module.exports = function (params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13435
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13436 // reset zoom
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13437 //////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13438 var zoom_y = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13439 // var zoom_x = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13440 var pan_dx = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13441 var pan_dy = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13442
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13443 var half_height = params.viz.clust.dim.height / 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13444 var center_y = -(zoom_y - 1) * half_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13445
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13446 d3.select(params.root + ' .clust_group').attr('transform', 'translate(' + [0, 0 + center_y] + ')' + ' scale(' + 1 + ',' + zoom_y + ')' + 'translate(' + [pan_dx, pan_dy] + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13447
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13448 d3.select(params.root + ' .row_label_zoom_container').attr('transform', 'translate(' + [0, center_y] + ')' + ' scale(' + zoom_y + ',' + zoom_y + ')' + 'translate(' + [0, pan_dy] + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13449
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13450 d3.select(params.root + ' .row_cat_container').attr('transform', 'translate(' + [0, center_y] + ')' + ' scale(' + 1 + ',' + zoom_y + ')' + 'translate(' + [0, pan_dy] + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13451
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13452 d3.select(params.root + ' .row_dendro_container').attr('transform', 'translate(' + [0, center_y] + ')' + ' scale(' + zoom_y + ',' + zoom_y + ')' + 'translate(' + [params.viz.uni_margin / 2, pan_dy] + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13453
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13454 d3.select(params.root + ' .col_zoom_container').attr('transform', ' scale(' + 1 + ',' + 1 + ')' + 'translate(' + [pan_dx, 0] + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13455
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13456 d3.select(params.root + ' .col_cat_container').attr('transform', ' scale(' + 1 + ',' + 1 + ')' + 'translate(' + [pan_dx, 0] + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13457
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13458 d3.select(params.root + ' .col_dendro_container').attr('transform', ' scale(' + 1 + ',' + 1 + ')' + 'translate(' + [pan_dx, params.viz.uni_margin / 2] + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13459
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13460 // reset crop button zooming
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13461 d3.select(params.root + ' .row_dendro_icons_group').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13462 return 'translate(0,0) scale(1)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13463 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13464
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13465 d3.select(params.root + ' .row_dendro_icons_group').selectAll('path').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13466 var inst_x = 7;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13467 var inst_y = d.pos_mid;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13468 return 'translate(' + inst_x + ',' + inst_y + ') ' + 'scale(1, 1)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13469 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13470 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13471
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13472 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13473 /* 135 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13474 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13475
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13476 module.exports = function resize_dendro(params, svg_group, delay_info = false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13477
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13478 // resize dendrogram
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13479 ///////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13480
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13481 var delays = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13482
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13483 if (delay_info === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13484 delays.run_transition = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13485 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13486 delays = delay_info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13487 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13488
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13489 var duration = params.viz.duration;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13490 var col_nodes = params.network_data.col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13491 var col_nodes_names = params.network_data.col_nodes_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13492
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13493 var dendro_group;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13494 if (delays.run_transition) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13495
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13496 dendro_group = svg_group.transition().delay(delays.update).duration(duration);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13497
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13498 svg_group.selectAll('.col_cat_group')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13499 // data binding needed for loss/gain of columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13500 .data(col_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13501 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13502 }).transition().delay(delays.update).duration(duration).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13503 var inst_index = _.indexOf(col_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13504 return 'translate(' + params.viz.x_scale(inst_index) + ',0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13505 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13506
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13507 svg_group.selectAll('.col_dendro_group')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13508 // data binding needed for loss/gain of columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13509 .data(col_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13510 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13511 }).transition().delay(delays.update).duration(duration).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13512 var inst_index = _.indexOf(col_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13513 return 'translate(' + params.viz.x_scale(inst_index) + ',0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13514 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13515 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13516
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13517 dendro_group = svg_group;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13518
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13519 svg_group.selectAll('.col_cat_group')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13520 // data binding needed for loss/gain of columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13521 .data(col_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13522 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13523 }).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13524 var inst_index = _.indexOf(col_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13525 return 'translate(' + params.viz.x_scale(inst_index) + ',0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13526 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13527
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13528 d3.select(params.root).selectAll('.col_dendro_group')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13529 // data binding needed for loss/gain of columns
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13530 .data(col_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13531 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13532 }).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13533 var inst_index = _.indexOf(col_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13534 return 'translate(' + params.viz.x_scale(inst_index) + ',0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13535 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13536 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13537
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13538 var i;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13539 var inst_class;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13540
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13541 _.each(['row', 'col'], function (inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13542
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13543 var num_cats = params.viz.all_cats[inst_rc].length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13544
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13545 for (i = 0; i < num_cats; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13546 inst_class = '.' + inst_rc + '_cat_rect_' + String(i);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13547
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13548 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13549 dendro_group.selectAll(inst_class).attr('height', params.viz.y_scale.rangeBand());
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13550 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13551 dendro_group.selectAll(inst_class).attr('width', params.viz.x_scale.rangeBand());
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13552 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13553 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13554 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13555
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13556 // position row_dendro_outer_container
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13557 var x_offset = params.viz.clust.margin.left + params.viz.clust.dim.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13558 var y_offset = params.viz.clust.margin.top;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13559 var spillover_width = params.viz.dendro_room.row + params.viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13560
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13561 d3.select(params.root + ' .viz_svg').select('row_dendro_outer_container').attr('transform', 'translate(' + x_offset + ',' + y_offset + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13562
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13563 d3.select(params.root + ' .row_dendro_outer_container').select('.row_dendro_spillover').attr('width', spillover_width + 'px').attr('height', params.viz.svg_dim.height);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13564
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13565 x_offset = params.viz.clust.margin.left;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13566 y_offset = params.viz.clust.margin.top + params.viz.clust.dim.height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13567 var spillover_height = params.viz.dendro_room.col + params.viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13568
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13569 d3.select(params.root + ' .col_dendro_outer_container').select('.col_dendro_spillover').attr('width', params.viz.svg_dim.width).attr('height', spillover_height + 'px');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13570
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13571 d3.select(params.root + ' .col_dendro_outer_container').select('.col_dendro_spillover_top').attr('width', params.viz.svg_dim.width).attr('height', params.viz.svg_dim.height).attr('transform', 'translate(0,' + params.viz.dendro_room.col + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13572
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13573 x_offset = params.viz.clust.margin.left;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13574 y_offset = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13575 d3.select(params.root + ' .col_dendro_icons_container').attr('transform', 'translate(' + x_offset + ',' + y_offset + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13576 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13577
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13578 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13579 /* 136 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13580 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13581
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13582 module.exports = function resize_super_labels(params, ini_svg_group, delay_info = false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13583
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13584 var delays = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13585 var duration = params.viz.duration;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13586 var svg_group;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13587
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13588 if (delay_info === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13589 delays.run_transition = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13590 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13591 delays = delay_info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13592 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13593
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13594 if (delays.run_transition) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13595 svg_group = ini_svg_group.transition().delay(delays.update).duration(duration);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13596 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13597 svg_group = ini_svg_group;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13598 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13599
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13600 svg_group.select('.super_col_bkg').attr('height', params.viz.super_labels.dim.width + 'px').attr('transform', 'translate(' + params.viz.clust.margin.left + ',' + params.viz.grey_border_width + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13601
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13602 // super col title
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13603 svg_group.select('.super_col').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13604 var inst_x = params.viz.clust.dim.width / 2 + params.viz.norm_labels.width.row;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13605 var inst_y = params.viz.super_labels.dim.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13606 return 'translate(' + inst_x + ',' + inst_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13607 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13608
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13609 svg_group.select('.super_row_bkg').attr('width', params.viz.super_labels.dim.width + 'px').attr('transform', 'translate(' + params.viz.grey_border_width + ',0)');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13610
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13611 svg_group.select('.super_row').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13612 var inst_x = params.viz.super_labels.dim.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13613 var inst_y = params.viz.clust.dim.height / 2 + params.viz.norm_labels.width.col;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13614 return 'translate(' + inst_x + ',' + inst_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13615 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13616 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13617
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13618 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13619 /* 137 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13620 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13621
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13622 module.exports = function resize_spillover(viz, ini_svg_group, delay_info = false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13623
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13624 var delays = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13625 var duration = viz.duration;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13626 var svg_group;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13627
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13628 if (delay_info === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13629 delays.run_transition = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13630 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13631 delays = delay_info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13632 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13633
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13634 if (delays.run_transition) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13635 svg_group = ini_svg_group.transition().delay(delays.update).duration(duration);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13636 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13637 svg_group = ini_svg_group;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13638 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13639
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13640 svg_group.select(viz.root + ' .right_slant_triangle').attr('transform', 'translate(' + viz.clust.dim.width + ',' + viz.norm_labels.width.col + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13641
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13642 svg_group.select(viz.root + ' .left_slant_triangle').attr('transform', 'translate(-1,' + viz.norm_labels.width.col + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13643
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13644 var rect_height = viz.clust.margin.top + viz.uni_margin / 5;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13645 svg_group.select(viz.root + ' .top_left_white').attr('width', viz.clust.margin.left).attr('height', rect_height);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13646
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13647 var tmp_left = viz.clust.margin.left + viz.clust.dim.width + viz.uni_margin + viz.dendro_room.row;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13648 var tmp_top = viz.norm_labels.margin.top + viz.norm_labels.width.col;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13649
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13650 svg_group.select(viz.root + ' .right_spillover_container').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13651 return 'translate(' + tmp_left + ', 0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13652 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13653
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13654 tmp_top = viz.norm_labels.margin.top + viz.norm_labels.width.col;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13655
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13656 svg_group.select(viz.root + ' .right_spillover_container rect').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13657 return 'translate( 0,' + tmp_top + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13658 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13659
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13660 svg_group.select(viz.root + ' .right_spillover').attr('height', viz.svg_dim.height + 'px');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13661
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13662 // resize dendro spillovers
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13663 var x_offset = viz.clust.margin.left + viz.clust.dim.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13664 var y_offset = tmp_top;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13665 var tmp_width = viz.dendro_room.row + viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13666 var tmp_height = viz.cat_room.col + viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13667 d3.select(viz.root + ' .dendro_row_spillover').attr('width', tmp_width).attr('height', tmp_height).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13668 return 'translate(' + x_offset + ',' + y_offset + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13669 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13670
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13671 // hide spillover left top of col dendrogram
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13672 x_offset = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13673 y_offset = viz.clust.margin.top + viz.clust.dim.height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13674 tmp_width = viz.clust.margin.left;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13675 tmp_height = viz.clust.dim.height * 10;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13676
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13677 svg_group.select('.dendro_col_spillover').attr('width', tmp_width).attr('height', tmp_height).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13678 return 'translate(' + x_offset + ',' + y_offset + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13679 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13680
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13681 x_offset = viz.clust.margin.left + viz.clust.dim.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13682 y_offset = viz.clust.margin.top + viz.clust.dim.height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13683 tmp_width = viz.cat_room.col + viz.clust.dim.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13684 tmp_height = viz.cat_room.row + viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13685
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13686 svg_group.select('.dendro_corner_spillover').attr('width', tmp_width).attr('height', tmp_height).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13687 return 'translate(' + x_offset + ',' + y_offset + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13688 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13689
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13690 x_offset = viz.clust.margin.left + viz.clust.dim.width + viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13691 y_offset = viz.norm_labels.margin.top + viz.norm_labels.width.col + 2.5 * viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13692 var extra_x_room = 2.75;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13693 var extra_y_room = 1.2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13694
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13695 // reposition category superlabels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13696 if (viz.show_categories.col) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13697
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13698 d3.selectAll(viz.root + ' .col_cat_super').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13699 var inst_cat = parseInt(d.split('-')[1], 10);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13700 var inst_y = y_offset + extra_y_room * viz.cat_room.symbol_width * inst_cat;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13701 return 'translate(' + x_offset + ',' + inst_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13702 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13703 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13704
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13705 if (viz.show_categories.row) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13706 d3.select(viz.root + ' .row_cat_label_container').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13707 x_offset = viz.norm_labels.margin.left + viz.norm_labels.width.row + viz.cat_room.symbol_width + extra_x_room * viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13708 y_offset = viz.clust.margin.top - viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13709 return 'translate(' + x_offset + ',' + y_offset + ') rotate(-90)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13710 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13711 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13712
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13713 // white border bottom - prevent clustergram from hitting border
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13714 if (viz.show_dendrogram) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13715 y_offset = viz.clust.margin.top + viz.clust.dim.height + viz.dendro_room.col - 2 * viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13716 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13717 y_offset = viz.clust.margin.top + viz.clust.dim.height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13718 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13719
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13720 d3.select(viz.root + ' .bottom_spillover_container').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13721 // shift up enough to show the entire border width
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13722 return 'translate(0,' + y_offset + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13723 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13724
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13725 svg_group.select(viz.root + ' .bottom_spillover').attr('width', viz.svg_dim.width).attr('height', 2 * viz.svg_dim.height);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13726
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13727 var inst_height = viz.cat_room.col + 1.5 * viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13728 // white rect to cover excess labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13729 d3.select(viz.viz_svg + ' .top_right_white').attr('fill', viz.background_color).attr('width', 2 * viz.clust.dim.width).attr('height', inst_height).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13730 var tmp_left = viz.clust.margin.left + viz.clust.dim.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13731 var tmp_top = viz.norm_labels.width.col + viz.norm_labels.margin.top - viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13732 return 'translate(' + tmp_left + ', ' + tmp_top + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13733 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13734 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13735
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13736 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13737 /* 138 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13738 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13739
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13740 module.exports = function resize_borders(params, svg_group) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13741
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13742 // left border
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13743 svg_group.select('.left_border').attr('width', params.viz.grey_border_width).attr('height', params.viz.svg_dim.height).attr('transform', 'translate(0,0)');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13744
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13745 // right border
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13746 svg_group.select('.right_border').attr('width', params.viz.grey_border_width).attr('height', params.viz.svg_dim.height).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13747 var inst_offset = params.viz.svg_dim.width - params.viz.grey_border_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13748 return 'translate(' + inst_offset + ',0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13749 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13750
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13751 // top border
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13752 svg_group.select('.top_border').attr('width', params.viz.svg_dim.width).attr('height', params.viz.grey_border_width).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13753 var inst_offset = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13754 return 'translate(' + inst_offset + ',0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13755 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13756
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13757 // bottom border
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13758 svg_group.select('.bottom_border').attr('width', params.viz.svg_dim.width).attr('height', params.viz.grey_border_width).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13759 var inst_offset = params.viz.svg_dim.height - params.viz.grey_border_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13760 return 'translate(0,' + inst_offset + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13761 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13762 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13763
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13764 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13765 /* 139 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13766 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13767
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13768 module.exports = function resize_row_labels(params, ini_svg_group, delay_info = false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13769
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13770 var delays = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13771 var duration = params.viz.duration;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13772 var svg_group;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13773
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13774 var row_nodes = params.network_data.row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13775 var row_nodes_names = params.network_data.row_nodes_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13776
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13777 if (delay_info === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13778 delays.run_transition = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13779 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13780 delays = delay_info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13781 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13782
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13783 if (delays.run_transition) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13784
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13785 ini_svg_group.selectAll('.row_label_group')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13786 // data bind necessary for loss/gain of rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13787 .data(row_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13788 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13789 }).transition().delay(delays.update).duration(duration).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13790 var inst_index = _.indexOf(row_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13791 return 'translate(0,' + params.viz.y_scale(inst_index) + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13792 }).attr('y', params.viz.rect_height * 0.5 + params.labels.default_fs_row * 0.35);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13793
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13794 svg_group = ini_svg_group.transition().delay(delays.update).duration(duration);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13795 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13796
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13797 ini_svg_group.selectAll('.row_label_group')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13798 // data bind necessary for loss/gain of rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13799 .data(row_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13800 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13801 }).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13802 var inst_index = _.indexOf(row_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13803 return 'translate(0,' + params.viz.y_scale(inst_index) + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13804 }).attr('y', params.viz.rect_height * 0.5 + params.labels.default_fs_row * 0.35);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13805
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13806 svg_group = ini_svg_group;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13807 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13808
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13809 svg_group.select(params.root + ' .row_container').attr('transform', 'translate(' + params.viz.norm_labels.margin.left + ',' + params.viz.clust.margin.top + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13810
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13811 svg_group.select(params.root + ' .row_container').select('.white_bars').attr('width', params.viz.label_background.row).attr('height', 30 * params.viz.clust.dim.height + 'px');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13812
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13813 svg_group.select(params.root + ' .row_container').select('.row_label_container').attr('transform', 'translate(' + params.viz.norm_labels.width.row + ',0)');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13814 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13815
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13816 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13817 /* 140 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13818 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13819
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13820 module.exports = function resize_highlights(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13821
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13822 // reposition tile highlight
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13823 ////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13824
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13825 var rel_width_hlight = 6;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13826 // var opacity_hlight = 0.85;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13827 var hlight_width = rel_width_hlight * params.viz.border_width.x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13828 var hlight_height = rel_width_hlight * params.viz.border_width.y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13829
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13830 // top highlight
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13831 d3.select(params.root + ' .top_hlight').attr('width', params.viz.rect_width).attr('height', hlight_height).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13832 return 'translate(' + params.viz.x_scale(params.matrix.click_hlight_x) + ',0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13833 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13834
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13835 // left highlight
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13836 d3.select(params.root + ' .left_hlight').attr('width', hlight_width).attr('height', params.viz.rect_width - hlight_height * 0.99).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13837 return 'translate(' + params.viz.x_scale(params.matrix.click_hlight_x) + ',' + hlight_height * 0.99 + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13838 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13839
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13840 // right highlight
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13841 d3.select(params.root + ' .right_hlight').attr('width', hlight_width).attr('height', params.viz.rect_height - hlight_height * 0.99).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13842 var tmp_translate = params.viz.x_scale(params.matrix.click_hlight_x) + params.viz.rect_width - hlight_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13843 return 'translate(' + tmp_translate + ',' + hlight_height * 0.99 + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13844 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13845
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13846 // bottom highlight
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13847 d3.select(params.root + ' .bottom_hlight').attr('width', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13848 return params.viz.rect_width - 1.98 * hlight_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13849 }).attr('height', hlight_height).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13850 var tmp_translate_x = params.viz.x_scale(params.matrix.click_hlight_x) + hlight_width * 0.99;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13851 var tmp_translate_y = params.viz.rect_height - hlight_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13852 return 'translate(' + tmp_translate_x + ',' + tmp_translate_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13853 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13854
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13855 // resize row highlight
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13856 /////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13857 d3.select(params.root + ' .row_top_hlight').attr('width', params.viz.svg_dim.width).attr('height', hlight_height);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13858
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13859 d3.select(params.root + ' .row_bottom_hlight').attr('width', params.viz.svg_dim.width).attr('height', hlight_height).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13860 var tmp_translate_y = params.viz.rect_height - hlight_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13861 return 'translate(0,' + tmp_translate_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13862 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13863
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13864 // resize col highlight
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13865 /////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13866 d3.select(params.root + ' .col_top_hlight').attr('width', params.viz.clust.dim.height).attr('height', hlight_width).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13867 var tmp_translate_y = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13868 var tmp_translate_x = -(params.viz.clust.dim.height + params.viz.cat_room.col + params.viz.uni_margin);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13869 return 'translate(' + tmp_translate_x + ',' + tmp_translate_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13870 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13871
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13872 d3.select(params.root + ' .col_bottom_hlight').attr('width', params.viz.clust.dim.height).attr('height', hlight_width).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13873 var tmp_translate_y = params.viz.rect_width - hlight_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13874 var tmp_translate_x = -(params.viz.clust.dim.height + params.viz.cat_room.col + params.viz.uni_margin);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13875 return 'translate(' + tmp_translate_x + ',' + tmp_translate_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13876 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13877 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13878
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13879 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13880 /* 141 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13881 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13882
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13883 module.exports = function resize_row_viz(params, ini_svg_group, delay_info = false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13884
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13885 var delays = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13886 var duration = params.viz.duration;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13887 var svg_group;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13888
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13889 if (delay_info === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13890 delays.run_transition = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13891 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13892 delays = delay_info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13893 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13894
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13895 if (delays.run_transition) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13896 svg_group = ini_svg_group.transition().delay(delays.update).duration(duration);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13897 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13898 svg_group = ini_svg_group;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13899 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13900
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13901 svg_group.select('.row_cat_outer_container').attr('transform', 'translate(' + params.viz.norm_labels.width.row + ',0)').select('white_bars').attr('width', params.viz.cat_room.row + 'px').attr('height', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13902 var inst_height = params.viz.clust.dim.height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13903 return inst_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13904 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13905
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13906 var x_offset = params.viz.clust.margin.left + params.viz.clust.dim.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13907 var y_offset = params.viz.clust.margin.top;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13908 svg_group.select('.row_dendro_outer_container').attr('transform', 'translate(' + x_offset + ',' + y_offset + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13909
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13910 // !! tmp resize col dendro
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13911 x_offset = params.viz.clust.margin.left;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13912 y_offset = params.viz.clust.margin.top + params.viz.clust.dim.height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13913
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13914 svg_group.select(' .col_dendro_outer_container').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13915 return 'translate(' + x_offset + ',' + y_offset + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13916 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13917 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13918
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13919 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13920 /* 142 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13921 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13922
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13923 module.exports = function (params, ini_svg_group, delay_info = false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13924
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13925 var delays = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13926 var duration = params.viz.duration;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13927 var svg_group;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13928
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13929 var col_nodes = params.network_data.col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13930 var col_nodes_names = params.network_data.col_nodes_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13931
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13932 if (delay_info === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13933 delays.run_transition = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13934 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13935 delays = delay_info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13936 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13937
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13938 if (delays.run_transition) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13939 svg_group = ini_svg_group.transition().delay(delays.update).duration(duration);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13940
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13941 ini_svg_group.selectAll('.col_label_text').data(col_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13942 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13943 }).transition().delay(delays.update).duration(duration).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13944 var inst_index = _.indexOf(col_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13945 return 'translate(' + params.viz.x_scale(inst_index) + ', 0) rotate(-90)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13946 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13947 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13948 svg_group = ini_svg_group;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13949
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13950 ini_svg_group.selectAll('.col_label_text').data(col_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13951 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13952 }).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13953 var inst_index = _.indexOf(col_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13954 return 'translate(' + params.viz.x_scale(inst_index) + ', 0) rotate(-90)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13955 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13956 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13957
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13958 // offset click group column label
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13959 var x_offset_click = params.viz.x_scale.rangeBand() / 2 + params.viz.border_width.x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13960
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13961 svg_group.select(params.root + ' .col_container').attr('transform', 'translate(' + params.viz.clust.margin.left + ',' + params.viz.norm_labels.margin.top + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13962
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13963 svg_group.select(params.root + ' .col_container').select('.white_bars').attr('width', 30 * params.viz.clust.dim.width + 'px').attr('height', params.viz.label_background.col);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13964
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13965 svg_group.select(params.root + ' .col_container').select('.col_label_outer_container').attr('transform', 'translate(0,' + params.viz.norm_labels.width.col + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13966
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13967 svg_group.selectAll('.col_label_group').attr('transform', 'translate(' + params.viz.x_scale.rangeBand() / 2 + ',' + x_offset_click + ') rotate(45)');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13968
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13969 svg_group.selectAll('.col_label_group').select('text').attr('y', params.viz.x_scale.rangeBand() * 0.60).attr('dx', 2 * params.viz.border_width.x);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13970 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13971
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13972 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13973 /* 143 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13974 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13975
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13976 var utils = __webpack_require__(2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13977
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13978 module.exports = function resize_col_text(params, svg_group) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13979 svg_group.selectAll('.col_label_group').select('text').style('font-size', params.labels.default_fs_col + 'px').text(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13980 return utils.normal_name(d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13981 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13982
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13983 svg_group.selectAll('.col_label_group').each(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13984 d3.select(this).select('text')[0][0].getBBox();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13985 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13986 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13987
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13988 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13989 /* 144 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13990 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13991
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13992 var col_viz_aid_triangle = __webpack_require__(110);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13993
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13994 module.exports = function resize_col_triangle(params, ini_svg_group, delay_info = false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13995
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13996 // resize column triangle
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13997 var ini_triangle_group = ini_svg_group.selectAll('.col_label_group').select('path');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13998
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	13999 var delays = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14000 var duration = params.viz.duration;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14001
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14002 if (delay_info === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14003 delays.run_transition = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14004 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14005 delays = delay_info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14006 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14007
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14008 var triangle_group;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14009 if (delays.run_transition) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14010 triangle_group = ini_triangle_group.transition().delay(delays.update).duration(duration);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14011 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14012 triangle_group = ini_triangle_group;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14013 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14014
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14015 triangle_group.attr('d', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14016 return col_viz_aid_triangle(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14017 }).attr('fill', '#eee');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14018 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14019
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14020 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14021 /* 145 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14022 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14023
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14024 var utils = __webpack_require__(2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14025
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14026 module.exports = function resize_col_hlight(params, svg_group, delay_info = false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14027
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14028 var delays = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14029 // var duration = params.viz.duration;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14030
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14031 if (delay_info === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14032 delays.run_transition = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14033 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14034 delays = delay_info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14035 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14036
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14037 if (utils.has(params.network_data.col_nodes[0], 'value')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14038
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14039 svg_group.selectAll('.col_bars').data(params.network_data.col_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14040 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14041 }).attr('width', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14042
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14043 var inst_value = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14044
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14045 if (d.value > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14046 inst_value = params.labels.bar_scale_col(d.value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14047 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14048 return inst_value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14049 })
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14050 // rotate labels - reduce width if rotating
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14051 .attr('height', params.viz.rect_width * 0.66);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14052 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14053 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14054
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14055 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14056 /* 146 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14057 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14058
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14059 var get_svg_dim = __webpack_require__(19);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14060 var calc_clust_height = __webpack_require__(22);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14061 var calc_clust_width = __webpack_require__(21);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14062 var calc_default_fs = __webpack_require__(31);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14063 var calc_zoom_switching = __webpack_require__(30);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14064
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14065 module.exports = function recalc_params_for_resize(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14066
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14067 // Resetting some visualization parameters
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14068 params = get_svg_dim(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14069 params.viz = calc_clust_width(params.viz);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14070 params.viz = calc_clust_height(params.viz);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14071
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14072 if (params.sim_mat) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14073 if (params.viz.clust.dim.width <= params.viz.clust.dim.height) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14074 params.viz.clust.dim.height = params.viz.clust.dim.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14075 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14076 params.viz.clust.dim.width = params.viz.clust.dim.height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14077 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14078 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14079
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14080 params.viz = calc_zoom_switching(params.viz);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14081
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14082 // redefine x_scale and y_scale rangeBands
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14083 params.viz.x_scale.rangeBands([0, params.viz.clust.dim.width]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14084 params.viz.y_scale.rangeBands([0, params.viz.clust.dim.height]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14085
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14086 // redefine border width
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14087 params.viz.border_width.x = params.viz.x_scale.rangeBand() / params.viz.border_fraction;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14088 params.viz.border_width.y = params.viz.y_scale.rangeBand() / params.viz.border_fraction;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14089
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14090 params.viz.rect_width = params.viz.x_scale.rangeBand() - params.viz.border_width.x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14091 params.viz.rect_height = params.viz.y_scale.rangeBand() - params.viz.border_width.y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14092
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14093 // for downsampling
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14094 if (params.viz.ds != null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14095 for (var i; i < params.viz.ds.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14096 params.viz.ds[i].rect_height = params.viz.ds[i].y_scale.rangeBand() - params.viz.border_width.y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14097 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14098 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14099
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14100 // recalc downsampled y_scale if necessary
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14101 if (params.viz.ds_num_levels > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14102 _.each(params.viz.ds, function (inst_ds) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14103
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14104 // y_scale
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14105 /////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14106 inst_ds.y_scale = d3.scale.ordinal().rangeBands([0, params.viz.clust.dim.height]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14107 inst_ds.y_scale.domain(d3.range(inst_ds.num_rows + 1));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14108
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14109 inst_ds.rect_height = inst_ds.y_scale.rangeBand() - params.viz.border_width.y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14110 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14111 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14112
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14113 // redefine zoom extent
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14114 params.viz.square_zoom = params.viz.norm_labels.width.col / (params.viz.rect_width / 2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14115
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14116 // the default font sizes are set here
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14117 params = calc_default_fs(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14118
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14119 return params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14120 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14121
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14122 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14123 /* 147 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14124 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14125
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14126 var draw_up_tile = __webpack_require__(43);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14127 var draw_dn_tile = __webpack_require__(44);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14128 var fine_position_tile = __webpack_require__(47);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14129
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14130 module.exports = function resize_row_tiles(params, svg_group) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14131
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14132 var row_nodes_names = params.network_data.row_nodes_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14133
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14134 if (params.viz.ds_level === -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14135
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14136 // no downsampling
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14137 ///////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14138
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14139 // resize rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14140 svg_group.selectAll('.row').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14141 var tmp_index = _.indexOf(row_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14142 var inst_y = params.viz.y_scale(tmp_index);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14143 return 'translate(0,' + inst_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14144 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14145
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14146 // resize tiles
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14147 svg_group.selectAll('.row').selectAll('.tile').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14148 return fine_position_tile(params, d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14149 }).attr('width', params.viz.rect_width).attr('height', params.viz.rect_height);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14150
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14151 // resize tile_up
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14152 svg_group.selectAll('.row').selectAll('.tile_up').attr('d', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14153 return draw_up_tile(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14154 }).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14155 return fine_position_tile(params, d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14156 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14157
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14158 // resize tile_dn
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14159 svg_group.selectAll('.row').selectAll('.tile_dn').attr('d', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14160 return draw_dn_tile(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14161 }).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14162 return fine_position_tile(params, d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14163 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14164 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14165
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14166 // downsampling
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14167 /////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14168
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14169 var ds_level = params.viz.ds_level;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14170 var row_class = '.ds' + String(ds_level) + '_row';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14171 var ds_rect_height = params.viz.ds[ds_level].rect_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14172
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14173 svg_group.selectAll(row_class).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14174 var inst_y = params.viz.ds[ds_level].y_scale(d.row_index);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14175 return 'translate(0,' + inst_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14176 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14177
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14178 // reset ds-tiles
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14179 svg_group.selectAll(row_class).selectAll('.tile').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14180 return fine_position_tile(params, d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14181 }).attr('width', params.viz.rect_width).attr('height', ds_rect_height);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14182 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14183 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14184
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14185 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14186 /* 148 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14187 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14188
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14189 var calc_val_max = __webpack_require__(23);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14190
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14191 module.exports = function resize_label_bars(cgm, svg_group) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14192 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14193
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14194 // // set bar scale
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14195 // var val_max = Math.abs(_.max( params.network_data.row_nodes, function(d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14196 // return Math.abs(d.value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14197 // } ).value) ;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14198
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14199 // params.labels.bar_scale_row = d3.scale
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14200 // .linear()
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14201 // .domain([0, val_max])
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14202 // .range([0, params.viz.norm_labels.width.row ]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14203
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14204 params = calc_val_max(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14205
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14206 svg_group.selectAll('.row_bars')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14207 // .transition().delay(delays.update).duration(duration)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14208 .attr('width', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14209 var inst_value = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14210 inst_value = params.labels.bar_scale_row(Math.abs(d.value));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14211 return inst_value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14212 }).attr('x', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14213 var inst_value = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14214 inst_value = -params.labels.bar_scale_row(Math.abs(d.value));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14215 return inst_value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14216 }).attr('height', params.viz.y_scale.rangeBand());
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14217 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14218
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14219 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14220 /* 149 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14221 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14222
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14223 module.exports = function position_play_button(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14224
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14225 var clust_transform = d3.select(params.root + ' .clust_container').attr('transform');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14226
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14227 var clust_x = Number(clust_transform.split('(')[1].split(',')[0]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14228 var clust_y = Number(clust_transform.split(',')[1].replace(')', ''));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14229 var trans_x = clust_x + params.viz.clust.dim.width / 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14230 var trans_y = clust_y + params.viz.clust.dim.height / 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14231
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14232 d3.select(params.root + ' .play_button').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14233 return 'translate(' + trans_x + ',' + trans_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14234 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14235 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14236
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14237 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14238 /* 150 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14239 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14240
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14241 module.exports = function position_svg_dendro_slider(cgm, inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14242
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14243 var viz = cgm.params.viz;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14244 var tmp_left;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14245 var tmp_top;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14246 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14247
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14248 // row dendrogram
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14249 ///////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14250
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14251 // keep slider near clustergram
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14252 var max_room = viz.svg_dim.width - 3 * viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14253
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14254 // position close to row dendrogram trapezoids
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14255 tmp_left = viz.clust.margin.left + viz.clust.dim.width + 5 * viz.dendro_room.row;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14256
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14257 if (tmp_left > max_room) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14258 tmp_left = max_room;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14259 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14260
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14261 tmp_top = viz.clust.margin.top + 3 * viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14262 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14263
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14264 // column dendrogram
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14265 ///////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14266 tmp_left = 2 * viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14267 // tmp_top = viz.svg_dim.height - 2.5 * viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14268 tmp_top = viz.clust.margin.top + viz.clust.dim.height + viz.dendro_room.col - 2 * viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14269 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14270
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14271 d3.select(cgm.params.root + ' .' + inst_rc + '_slider_group').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14272 var inst_translation;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14273 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14274 inst_translation = 'translate(' + tmp_left + ',' + tmp_top + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14275 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14276 inst_translation = 'translate(' + tmp_left + ',' + tmp_top + '), rotate(-90)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14277 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14278 return inst_translation;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14279 }).style('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14280 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14281
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14282 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14283 /* 151 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14284 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14285
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14286 module.exports = function grid_lines_viz(params, duration = 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14287
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14288 var delay = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14289 if (duration > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14290 delay = 2000;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14291 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14292
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14293 var horz_lines = d3.selectAll(params.root + ' .horz_lines');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14294 var vert_lines = d3.selectAll(params.root + ' .vert_lines');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14295
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14296 horz_lines.style('opacity', 0).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14297 var inst_index = d.row_index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14298 var inst_trans = params.viz.y_scale(inst_index);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14299 return 'translate( 0,' + inst_trans + ') rotate(0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14300 }).transition().duration(duration).delay(delay).style('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14301
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14302 horz_lines.append('line').attr('x1', 0).attr('x2', params.viz.clust.dim.width).style('stroke-width', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14303 var inst_width = params.viz.border_width.y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14304 return inst_width + 'px';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14305 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14306
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14307 vert_lines.style('opacity', 0).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14308 var inst_index = d.col_index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14309 var inst_trans = params.viz.x_scale(inst_index);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14310 return 'translate(' + inst_trans + ') rotate(-90)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14311 }).transition().duration(duration).delay(delay).style('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14312
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14313 vert_lines.append('line').attr('x1', 0).attr('x2', -params.viz.clust.dim.height).style('stroke-width', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14314 var inst_width = params.viz.border_width.x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14315 return inst_width + 'px';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14316 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14317 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14318
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14319 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14320 /* 152 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14321 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14322
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14323 var cat_tooltip_text = __webpack_require__(153);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14324 var d3_tip_custom = __webpack_require__(48);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14325 var reset_cat_opacity = __webpack_require__(154);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14326 var ini_cat_opacity = __webpack_require__(155);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14327 var click_filter_cats = __webpack_require__(156);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14328 var get_cat_names = __webpack_require__(157);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14329
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14330 module.exports = function make_col_cat(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14331
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14332 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14333
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14334 // make or reuse outer container
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14335 if (d3.select(params.root + ' .col_cat_outer_container').empty()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14336 d3.select(params.root + ' .col_container').append('g').attr('class', 'col_cat_outer_container').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14337 var inst_offset = params.viz.norm_labels.width.col + 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14338 return 'translate(0,' + inst_offset + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14339 }).append('g').attr('class', 'col_cat_container');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14340 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14341 d3.select(params.root + ' .col_container').select('col_cat_outer_container').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14342 var inst_offset = params.viz.norm_labels.width.col + 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14343 return 'translate(0,' + inst_offset + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14344 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14345 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14346
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14347 // remove old col_cat_tips
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14348 d3.selectAll(params.viz.root_tips + '_col_cat_tip').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14349
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14350 // d3-tooltip
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14351 var cat_tip = d3_tip_custom().attr('class', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14352 var root_tip_selector = params.viz.root_tips.replace('.', '');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14353 var class_string = root_tip_selector + ' d3-tip ' + root_tip_selector + '_col_cat_tip';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14354 return class_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14355 }).direction('s').offset([5, 0]).style('display', 'none').html(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14356 return cat_tooltip_text(params, d, this, 'col');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14357 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14358
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14359 // append groups - each will hold classification rects
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14360 d3.select(params.root + ' .col_cat_container').selectAll('g').data(params.network_data.col_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14361 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14362 }).enter().append('g').attr('class', 'col_cat_group').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14363 var inst_index = _.indexOf(params.network_data.col_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14364 // return 'translate(' + params.viz.x_scale(d.col_index) + ',0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14365 return 'translate(' + params.viz.x_scale(inst_index) + ',0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14366 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14367
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14368 d3.select(params.root + ' .col_cat_container').selectAll('.col_cat_group').call(cat_tip);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14369
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14370 // add category rects
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14371 d3.selectAll(params.root + ' .col_cat_group').each(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14372
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14373 var inst_selection = this;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14374 var cat_rect;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14375
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14376 _.each(params.viz.all_cats.col, function (inst_cat) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14377
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14378 var inst_num = parseInt(inst_cat.split('-')[1], 10);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14379 var cat_rect_class = 'col_cat_rect_' + String(inst_num);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14380
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14381 if (d3.select(inst_selection).select('.' + cat_rect_class).empty()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14382 cat_rect = d3.select(inst_selection).append('rect').attr('class', cat_rect_class).attr('cat', inst_cat).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14383 var cat_room = params.viz.cat_room.symbol_width + params.viz.cat_room.separation;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14384 var inst_shift = inst_num * cat_room;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14385 return 'translate(0,' + inst_shift + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14386 }).on('click', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14387
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14388 if (d3.select(this).classed('cat_strings')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14389
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14390 if (d3.event.shiftKey === true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14391 click_filter_cats_db(cgm, d, this, 'col');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14392 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14393
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14394 var found_names = get_cat_names(params, d, this, 'col');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14395
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14396 $(params.root + ' .dendro_info').modal('toggle');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14397 var group_string = found_names.join(', ');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14398 d3.select(params.root + ' .dendro_info input').attr('value', group_string);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14399 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14400 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14401 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14402 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14403 cat_rect = d3.select(inst_selection).select('.' + cat_rect_class);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14404 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14405
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14406 cat_rect.attr('width', params.viz.x_scale.rangeBand()).attr('height', params.viz.cat_room.symbol_width).style('fill', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14407 var cat_name = d[inst_cat];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14408 var inst_color = params.viz.cat_colors.col[inst_cat][cat_name];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14409 return inst_color;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14410 }).on('mouseover', cat_tip.show).on('mouseout', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14411 cat_tip.hide(this);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14412 reset_cat_opacity(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14413 d3.select(this).classed('hovering', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14414
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14415 d3.selectAll('.d3-tip').style('display', 'none');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14416 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14417
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14418 ini_cat_opacity(params.viz, 'col', cat_rect, inst_cat);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14419 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14420 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14421
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14422 var click_filter_cats_db = _.debounce(click_filter_cats, 1500);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14423 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14424
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14425 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14426 /* 153 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14427 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14428
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14429 var get_cat_title = __webpack_require__(113);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14430
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14431 module.exports = function cat_tooltip_text(params, inst_data, inst_selection, inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14432
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14433 d3.selectAll(params.viz.root_tips + '_col_cat_tip').style('display', 'block');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14434
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14435 d3.selectAll(params.viz.root_tips + '_row_cat_tip').style('display', 'block');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14436
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14437 // category index
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14438 var inst_cat = d3.select(inst_selection).attr('cat');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14439 var cat_title = get_cat_title(params.viz, inst_cat, inst_rc);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14440 var cat_name = inst_data[inst_cat];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14441
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14442 if (typeof cat_name === 'string') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14443 if (cat_name.indexOf(': ') >= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14444 cat_name = cat_name.split(': ')[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14445 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14446 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14447
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14448 var cat_string = cat_title + ': ' + cat_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14449
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14450 d3.select(inst_selection).classed('hovering', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14451
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14452 setTimeout(highlight_categories, 500);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14453
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14454 return cat_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14455
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14456 function highlight_categories() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14457
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14458 var run_highlighting = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14459
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14460 if (d3.select(inst_selection).classed('hovering')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14461
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14462 var node_types = [inst_rc];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14463
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14464 if (params.viz.sim_mat) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14465 node_types = ['row', 'col'];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14466 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14467
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14468 _.each(node_types, function (tmp_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14469
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14470 // only highlight string categories that are not 'false' categories
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14471 if (typeof cat_name === 'string') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14472 if (cat_name.indexOf('Not ') < 0 && cat_name != 'false') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14473 run_highlighting = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14474 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14475 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14476
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14477 if (run_highlighting) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14478
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14479 d3.selectAll(params.root + ' .' + tmp_rc + '_cat_group').selectAll('rect').style('opacity', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14480
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14481 var inst_opacity = d3.select(this).style('opacity');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14482
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14483 if (d3.select(this).classed('cat_strings') && d3.select(this).classed('filtered_cat') === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14484
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14485 var tmp_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14486 var tmp_cat = d3.select(this).attr('cat');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14487
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14488 if (d[tmp_cat].indexOf(': ') >= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14489 tmp_name = d[tmp_cat].split(': ')[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14490 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14491 tmp_name = d[tmp_cat];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14492 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14493
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14494 if (tmp_cat === inst_cat && tmp_name === cat_name) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14495 inst_opacity = params.viz.cat_colors.active_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14496 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14497 inst_opacity = params.viz.cat_colors.opacity / 4;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14498 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14499 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14500
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14501 return inst_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14502 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14503 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14504 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14505 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14506 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14507 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14508
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14509 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14510 /* 154 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14511 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14512
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14513 module.exports = function reset_cat_opacity(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14514
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14515 _.each(['row', 'col'], function (inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14516
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14517 d3.selectAll(params.root + ' .' + inst_rc + '_cat_group').selectAll('rect').style('opacity', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14518
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14519 var inst_opacity = d3.select(this).style('opacity');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14520
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14521 if (d3.select(this).classed('cat_strings') && d3.select(this).classed('filtered_cat') === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14522 inst_opacity = params.viz.cat_colors.opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14523 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14524
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14525 return inst_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14526 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14527 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14528 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14529
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14530 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14531 /* 155 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14532 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14533
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14534 module.exports = function ini_cat_opacity(viz, inst_rc, cat_rect, inst_cat, updating = false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14535
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14536 // debugger;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14537
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14538 var super_string = ': ';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14539 var inst_type = viz.cat_info[inst_rc][inst_cat].type;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14540
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14541 // set opacity based on string or value cats
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14542 if (inst_type === 'cat_strings') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14543
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14544 // optionally have categories transition in
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14545 if (updating) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14546 cat_rect.classed('cat_strings', true).style('opacity', 0).transition().duration(1000).style('opacity', viz.cat_colors.opacity);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14547 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14548 // opacity is fixed
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14549 cat_rect.classed('cat_strings', true).style('opacity', viz.cat_colors.opacity);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14550 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14551 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14552
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14553 // opacity varies based on value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14554 cat_rect.classed('cat_values', true).style('opacity', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14555
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14556 var unprocessed_val = d[inst_cat];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14557
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14558 var cat_value = get_cat_value(unprocessed_val);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14559
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14560 return viz.cat_info[inst_rc][inst_cat].cat_scale(Math.abs(cat_value));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14561 }).style('fill', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14562 var inst_color;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14563
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14564 var cat_value = get_cat_value(d[inst_cat]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14565
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14566 // get positive and negative colors
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14567 if (cat_value > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14568 inst_color = viz.cat_value_colors[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14569 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14570 inst_color = viz.cat_value_colors[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14571 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14572
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14573 return inst_color;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14574 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14575 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14576
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14577 function get_cat_value(unprocessed_value) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14578 if (typeof unprocessed_value === 'string') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14579
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14580 if (unprocessed_value.indexOf(super_string) > -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14581 unprocessed_value = unprocessed_value.split(super_string)[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14582 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14583 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14584
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14585 var cat_value = parseFloat(unprocessed_value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14586
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14587 return cat_value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14588 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14589 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14590
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14591 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14592 /* 156 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14593 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14594
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14595 var get_cat_names = __webpack_require__(157);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14596
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14597 module.exports = function click_filter_cats(cgm, inst_data, inst_selection, inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14598
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14599 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14600
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14601 var inst_cat = d3.select(inst_selection).attr('cat');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14602 var cat_name = inst_data[inst_cat];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14603
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14604 var found_names = get_cat_names(params, inst_data, inst_selection, inst_rc);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14605
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14606 var switch_rc = { 'row': 'col', 'col': 'row' };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14607 var other_rc = switch_rc[inst_rc];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14608
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14609 var filter_names = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14610 filter_names[inst_rc] = found_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14611
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14612 if (cgm.params.cat_filter[inst_rc] === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14613
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14614 if (cgm.params.dendro_filter.row === false && cgm.params.dendro_filter.col === false && cgm.params.cat_filter[other_rc] === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14615
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14616 var tmp_names = cgm.params.network_data.col_nodes_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14617
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14618 // keep a backup of the inst_view
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14619 var inst_row_nodes = cgm.params.network_data.row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14620 var inst_col_nodes = cgm.params.network_data.col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14621
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14622 // run filtering using found names
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14623 cgm.filter_viz_using_names(filter_names);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14624
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14625 // overwrite with backup of original nodes
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14626 cgm.params.inst_nodes.row_nodes = inst_row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14627 cgm.params.inst_nodes.col_nodes = inst_col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14628
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14629 // must set this after filtering has been run
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14630 cgm.params.cat_filter[inst_rc] = tmp_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14631
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14632 highlight_filtered_cat(inst_rc, inst_cat, cat_name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14633 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14634 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14635
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14636 // get backup of names
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14637 filter_names = cgm.params.cat_filter[inst_rc];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14638
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14639 // reset filter
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14640 cgm.filter_viz_using_names(filter_names);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14641 // must set this after filtering has been run
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14642 cgm.params.cat_filter[inst_rc] = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14643
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14644 // there are no filtered cats
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14645 d3.selectAll(params.root + ' .' + inst_rc + '_cat_group').selectAll('rect').classed('filtered_cat', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14646 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14647
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14648 function highlight_filtered_cat(inst_rc, inst_cat, cat_name) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14649
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14650 d3.selectAll(params.root + ' .' + inst_rc + '_cat_group').selectAll('rect').style('opacity', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14651
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14652 var inst_opacity = d3.select(this).style('opacity');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14653
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14654 if (d3.select(this).classed('cat_strings')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14655
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14656 var tmp_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14657 var tmp_cat = d3.select(this).attr('cat');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14658
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14659 // no need to filter out title
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14660 tmp_name = d[tmp_cat];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14661
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14662 if (tmp_cat === inst_cat && tmp_name === cat_name) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14663 inst_opacity = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14664
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14665 d3.select(this).classed('filtered_cat', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14666 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14667 // else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14668 // inst_opacity = params.viz.cat_colors.opacity/4;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14669 // }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14670 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14671
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14672 return inst_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14673 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14674 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14675 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14676
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14677 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14678 /* 157 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14679 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14680
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14681 var utils = __webpack_require__(2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14682
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14683 module.exports = function get_cat_names(params, inst_data, inst_selection, inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14684
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14685 // category index
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14686 var inst_cat = d3.select(inst_selection).attr('cat');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14687 var cat_name = inst_data[inst_cat];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14688 var tmp_nodes = params.network_data[inst_rc + '_nodes'];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14689
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14690 var found_nodes = _.filter(tmp_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14691 return d[inst_cat] == cat_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14692 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14693
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14694 var found_names = utils.pluck(found_nodes, 'name');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14695
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14696 return found_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14697 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14698
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14699 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14700 /* 158 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14701 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14702
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14703 var cat_tooltip_text = __webpack_require__(153);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14704 var d3_tip_custom = __webpack_require__(48);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14705 var reset_cat_opacity = __webpack_require__(154);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14706 var ini_cat_opacity = __webpack_require__(155);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14707 var click_filter_cats = __webpack_require__(156);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14708 var get_cat_names = __webpack_require__(157);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14709
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14710 module.exports = function make_row_cat(cgm, updating = false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14711
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14712 // console.log('make_row_cat')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14713
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14714 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14715
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14716 // make or reuse outer container
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14717 if (d3.select(params.root + ' .row_cat_outer_container').empty()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14718 d3.select(params.root + ' .row_container').append('g').attr('class', 'row_cat_outer_container').attr('transform', 'translate(' + params.viz.norm_labels.width.row + ',0)').append('g').attr('class', 'row_cat_container');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14719 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14720 d3.select(params.root + ' .row_container').select('row_cat_outer_container').attr('transform', 'translate(' + params.viz.norm_labels.width.row + ',0)');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14721 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14722
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14723 // white background
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14724 if (d3.select(params.root + ' .row_cat_container').select('.white_bars').empty()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14725 d3.select(params.root + ' .row_cat_container').append('rect').attr('class', 'white_bars').attr('fill', params.viz.background_color).attr('width', params.viz.cat_room.row + 'px').attr('height', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14726 var inst_height = params.viz.clust.dim.height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14727 return inst_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14728 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14729 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14730 d3.select(params.root + ' .row_cat_container').select('.white_bars').attr('fill', params.viz.background_color).attr('width', params.viz.cat_room.row + 'px').attr('height', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14731 var inst_height = params.viz.clust.dim.height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14732 return inst_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14733 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14734 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14735
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14736 // remove old col_cat_tips
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14737 d3.selectAll(params.viz.root_tips + '_row_cat_tip').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14738
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14739 // d3-tooltip
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14740 var cat_tip = d3_tip_custom().attr('class', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14741 var root_tip_selector = params.viz.root_tips.replace('.', '');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14742 var class_string = root_tip_selector + ' d3-tip ' + root_tip_selector + '_row_cat_tip';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14743 return class_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14744 }).direction('e').offset([5, 0]).style('display', 'none').html(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14745 return cat_tooltip_text(params, d, this, 'row');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14746 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14747
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14748 // groups that hold classification triangle and colorbar rect
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14749 d3.select(params.root + ' .row_cat_container').selectAll('g').data(params.network_data.row_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14750 // console.log('-------------')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14751 // console.log(d['cat-0'])
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14752 // console.log('-------------')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14753 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14754 }).enter().append('g').attr('class', 'row_cat_group').attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14755 var inst_index = _.indexOf(params.network_data.row_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14756 return 'translate(0, ' + params.viz.y_scale(inst_index) + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14757 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14758
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14759 d3.select(params.root + ' .row_cat_container').selectAll('.row_cat_group').call(cat_tip);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14760
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14761 // add row visual-aid triangles (if no downsampling)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14762 // if (params.viz.ds_level === -1){
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14763 // d3.selectAll(params.root+' .row_cat_group')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14764 // .append('path')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14765 // .attr('d', function() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14766 // var origin_x = params.viz.cat_room.symbol_width - 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14767 // var origin_y = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14768 // var mid_x = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14769 // var mid_y = params.viz.y_scale.rangeBand() / 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14770 // var final_x = params.viz.cat_room.symbol_width - 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14771 // var final_y = params.viz.y_scale.rangeBand();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14772 // var output_string = 'M ' + origin_x + ',' + origin_y + ' L ' +
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14773 // mid_x + ',' + mid_y + ', L ' + final_x + ',' + final_y + ' Z';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14774 // return output_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14775 // })
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14776 // .attr('fill', '#eee')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14777 // .style('opacity', params.viz.triangle_opacity);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14778 // }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14779
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14780 var cat_rect;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14781 var inst_selection;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14782
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14783 d3.selectAll(params.root + ' .row_cat_group rect').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14784
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14785 if (params.viz.show_categories.row) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14786
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14787 d3.selectAll(params.root + ' .row_cat_group').each(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14788
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14789 inst_selection = this;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14790
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14791 _.each(params.viz.all_cats.row, function (inst_cat) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14792
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14793 var inst_num = parseInt(inst_cat.split('-')[1], 10);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14794 var cat_rect_class = 'row_cat_rect_' + String(inst_num);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14795
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14796 if (d3.select(inst_selection).select('.' + cat_rect_class).empty()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14797 cat_rect = d3.select(inst_selection).append('rect').attr('class', cat_rect_class).attr('cat', inst_cat);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14798 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14799 cat_rect = d3.select(inst_selection).select('.' + cat_rect_class);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14800 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14801
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14802 cat_rect.attr('width', params.viz.cat_room.symbol_width).attr('height', params.viz.y_scale.rangeBand()).style('fill', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14803 var cat_name = d[inst_cat];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14804
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14805 // if (cat_name.indexOf(': ') >= 0){
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14806 // cat_name = cat_name.split(': ')[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14807 // }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14808
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14809 // console.log(cat_name)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14810
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14811 var inst_color = params.viz.cat_colors.row[inst_cat][cat_name];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14812
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14813 // console.log('inst_color: ' + String(inst_color));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14814 return inst_color;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14815 }).attr('x', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14816 var inst_offset = params.viz.cat_room.symbol_width + params.viz.uni_margin / 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14817 return inst_offset + 'px';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14818 }).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14819 var cat_room = params.viz.cat_room.symbol_width + params.viz.cat_room.separation;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14820 var inst_shift = inst_num * cat_room;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14821 return 'translate(' + inst_shift + ',0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14822 }).on('click', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14823
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14824 if (d3.select(this).classed('cat_strings')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14825
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14826 if (d3.event.shiftKey === true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14827 click_filter_cats_db(cgm, d, this, 'row');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14828 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14829
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14830 var found_names = get_cat_names(params, d, this, 'row');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14831
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14832 $(params.root + ' .dendro_info').modal('toggle');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14833 var group_string = found_names.join(', ');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14834 d3.select(params.root + ' .dendro_info input').attr('value', group_string);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14835 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14836 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14837 }).on('mouseover', cat_tip.show).on('mouseout', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14838 cat_tip.hide(this);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14839 reset_cat_opacity(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14840 d3.select(this).classed('hovering', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14841
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14842 d3.selectAll('.d3-tip').style('display', 'none');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14843 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14844
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14845 ini_cat_opacity(params.viz, 'row', cat_rect, inst_cat, updating);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14846 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14847 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14848 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14849
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14850 var click_filter_cats_db = _.debounce(click_filter_cats, 1500);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14851 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14852
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14853 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14854 /* 159 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14855 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14856
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14857 var make_dendro_triangles = __webpack_require__(55);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14858
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14859 module.exports = function make_row_dendro(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14860
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14861 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14862
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14863 var spillover_width = params.viz.dendro_room.row + params.viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14864
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14865 // position row_dendro_outer_container
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14866 var x_offset = params.viz.clust.margin.left + params.viz.clust.dim.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14867 var y_offset = params.viz.clust.margin.top;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14868
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14869 // make or reuse outer container
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14870 if (d3.select(params.root + ' .row_dendro_outer_container').empty()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14871
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14872 d3.select(params.root + ' .viz_svg').append('g').attr('class', 'row_dendro_outer_container').attr('transform', 'translate(' + x_offset + ',' + y_offset + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14873
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14874 d3.select(params.root + ' .row_dendro_outer_container').append('rect').classed('row_dendro_spillover', true).attr('fill', params.viz.background_color).attr('width', spillover_width + 'px').attr('height', params.viz.svg_dim.height);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14875
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14876 d3.select(params.root + ' .row_dendro_outer_container').append('g').attr('class', 'row_dendro_container').attr('transform', 'translate(' + params.viz.uni_margin / 2 + ',0)');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14877 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14878 d3.select(params.root + ' .viz_svg').select('row_dendro_outer_container').attr('transform', 'translate(' + x_offset + ',' + y_offset + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14879
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14880 d3.select(params.root + ' .row_dendro_outer_container').select('.row_dendro_spillover').attr('width', spillover_width + 'px').attr('height', params.viz.svg_dim.height);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14881 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14882
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14883 make_dendro_triangles(cgm, 'row', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14884
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14885 if (params.viz.inst_order.col != 'clust') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14886 d3.selectAll(params.root + ' .row_dendro_group').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14887 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14888 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14889
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14890 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14891 /* 160 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14892 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14893
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14894 var make_dendro_triangles = __webpack_require__(55);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14895
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14896 module.exports = function make_col_dendro(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14897
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14898 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14899
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14900 // position col_dendro_outer_container
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14901 var x_offset = params.viz.clust.margin.left;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14902 var y_offset = params.viz.clust.margin.top + params.viz.clust.dim.height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14903 var spillover_height = params.viz.dendro_room.col + params.viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14904
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14905 // make or reuse outer container
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14906 if (d3.select(params.root + ' .col_dendro_outer_container').empty()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14907
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14908 d3.select(params.root + ' .viz_svg').append('g').attr('class', 'col_dendro_outer_container').attr('transform', 'translate(' + x_offset + ',' + y_offset + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14909
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14910 d3.select(params.root + ' .col_dendro_outer_container').append('rect').classed('col_dendro_spillover', true).attr('fill', params.viz.background_color).attr('width', params.viz.svg_dim.width).attr('height', spillover_height + 'px');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14911
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14912 d3.select(params.root + ' .col_dendro_outer_container').append('g').attr('class', 'col_dendro_container').attr('transform', 'translate(0,' + params.viz.uni_margin / 2 + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14913
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14914 d3.select(params.root + ' .col_dendro_outer_container').append('rect').classed('col_dendro_spillover_top', true).attr('fill', params.viz.background_color).attr('width', params.viz.svg_dim.width).attr('height', params.viz.svg_dim.height).attr('transform', 'translate(0,' + params.viz.dendro_room.col + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14915 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14916
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14917 d3.select(params.root + ' .viz_svg').select('col_dendro_outer_container').attr('transform', 'translate(' + x_offset + ',' + y_offset + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14918
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14919 d3.select(params.root + ' .col_dendro_outer_container').select('.col_dendro_spillover').attr('width', params.viz.svg_dim.width).attr('height', spillover_height + 'px');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14920 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14921
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14922 make_dendro_triangles(cgm, 'col', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14923
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14924 if (params.viz.inst_order.row != 'clust') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14925 d3.selectAll(params.root + ' .col_dendro_group').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14926 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14927 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14928
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14929 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14930 /* 161 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14931 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14932
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14933 var build_svg_dendro_slider = __webpack_require__(162);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14934
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14935 module.exports = function make_svg_dendro_sliders(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14936
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14937 build_svg_dendro_slider(cgm, 'row');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14938 build_svg_dendro_slider(cgm, 'col');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14939 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14940
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14941 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14942 /* 162 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14943 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14944
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14945 var change_groups = __webpack_require__(163);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14946 var position_svg_dendro_slider = __webpack_require__(150);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14947
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14948 module.exports = function build_svg_dendro_slider(cgm, inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14949
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14950 var slider_length = 100;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14951
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14952 var drag = d3.behavior.drag().on("drag", dragging).on('dragend', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14953 cgm.params.is_slider_drag = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14954 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14955
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14956 var slider_group = d3.select(cgm.params.root + ' .viz_svg').append('g').classed(inst_rc + '_slider_group', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14957
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14958 position_svg_dendro_slider(cgm, inst_rc);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14959
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14960 var rect_height = slider_length + 20;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14961 var rect_width = 30;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14962 slider_group.append('rect').classed(inst_rc + '_slider_background', true).attr('height', rect_height + 'px').attr('width', rect_width + 'px').attr('fill', cgm.params.viz.background_color).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14963 var translate_string = 'translate(-10, -5)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14964 return translate_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14965 }).style('opacity', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14966
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14967 slider_group.append("line").style('stroke-width', slider_length / 7 + 'px').style('stroke', 'black').style('stroke-linecap', 'round').style('opacity', 0.0).attr("y1", 0).attr("y2", function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14968 return slider_length - 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14969 }).on('click', click_dendro_slider);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14970
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14971 var offset_triangle = -slider_length / 40;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14972 slider_group.append('path').style('fill', 'black').attr('transform', 'translate(' + offset_triangle + ', 0)').attr('d', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14973
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14974 // up triangle
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14975 var start_x = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14976 var start_y = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14977
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14978 var mid_x = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14979 var mid_y = slider_length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14980
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14981 var final_x = slider_length / 10;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14982 var final_y = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14983
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14984 var output_string = 'M' + start_x + ',' + start_y + ', L' + mid_x + ', ' + mid_y + ', L' + final_x + ',' + final_y + ' Z';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14985
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14986 return output_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14987 }).style('opacity', 0.35).on('click', click_dendro_slider);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14988
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14989 var default_opacity = 0.35;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14990 var high_opacity = 0.6;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14991 slider_group.append('circle').classed(inst_rc + '_group_circle', true).attr('r', slider_length * 0.08).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14992 return 'translate(0, ' + slider_length / 2 + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14993 }).style('fill', 'blue').style('opacity', default_opacity).on('mouseover', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14994 d3.select(this).style('opacity', high_opacity);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14995 }).on('mouseout', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14996 d3.select(this).style('opacity', default_opacity);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14997 }).call(drag);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14998
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	14999 function dragging() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15000
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15001 cgm.params.is_slider_drag = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15002
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15003 // d[0] = d3.event.x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15004 var slider_pos = d3.event.y;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15005
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15006 if (slider_pos < 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15007 slider_pos = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15008 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15009
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15010 if (slider_pos > slider_length) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15011 slider_pos = slider_length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15012 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15013
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15014 if (this.nextSibling) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15015 this.parentNode.appendChild(this);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15016 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15017
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15018 slider_pos = d3.round(slider_pos, -1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15019
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15020 var slider_value = 10 - slider_pos / 10;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15021
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15022 d3.select(this).attr("transform", "translate(0, " + slider_pos + ")");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15023
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15024 change_groups(cgm, inst_rc, slider_value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15025 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15026
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15027 function click_dendro_slider() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15028
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15029 var clicked_line_position = d3.mouse(this);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15030
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15031 var rel_pos = d3.round(clicked_line_position[1], -1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15032
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15033 d3.select(cgm.params.root + ' .' + inst_rc + '_group_circle').attr('transform', 'translate(0, ' + rel_pos + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15034
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15035 var slider_value = 10 - rel_pos / 10;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15036
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15037 change_groups(cgm, inst_rc, slider_value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15038 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15039 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15040
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15041 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15042 /* 163 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15043 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15044
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15045 // var build_color_groups = require('./build_color_groups');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15046 var make_dendro_triangles = __webpack_require__(55);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15047
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15048 /* Changes the groupings (x- and y-axis color bars).
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15049 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15050 module.exports = function (cgm, inst_rc, inst_index) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15051
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15052 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15053
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15054 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15055 params.group_level.row = inst_index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15056 } else if (inst_rc === 'col') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15057 params.group_level.col = inst_index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15058 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15059
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15060 var is_change_group = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15061
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15062 make_dendro_triangles(cgm, inst_rc, is_change_group);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15063 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15064
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15065 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15066 /* 164 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15067 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15068
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15069 var make_dendro_crop_buttons = __webpack_require__(60);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15070
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15071 module.exports = function make_row_dendro_spillover(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15072
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15073 var viz = cgm.params.viz;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15074
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15075 // hide spillover from right
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15076 var tmp_left = viz.clust.margin.left + viz.clust.dim.width + viz.uni_margin + viz.dendro_room.row;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15077
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15078 var r_spill_container = d3.select(viz.viz_svg).append('g').classed('right_spillover_container', true).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15079 return 'translate(' + tmp_left + ', 0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15080 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15081
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15082 var tmp_top = viz.norm_labels.margin.top + viz.norm_labels.width.col;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15083
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15084 r_spill_container.append('rect').attr('fill', viz.background_color) //!! prog_colors
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15085 .attr('width', 10 * viz.clust.dim.width).attr('height', viz.svg_dim.height + 'px').attr('class', 'white_bars').attr('class', 'right_spillover').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15086 return 'translate( 0,' + tmp_top + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15087 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15088
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15089 var x_offset = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15090 var y_offset = viz.clust.margin.top;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15091 r_spill_container.append('g').classed('row_dendro_icons_container', true).attr('transform', 'translate(' + x_offset + ',' + y_offset + ')').append('g').classed('row_dendro_icons_group', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15092
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15093 make_dendro_crop_buttons(cgm, 'row');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15094
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15095 // hide spillover from top of row dendrogram
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15096 x_offset = viz.clust.margin.left + viz.clust.dim.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15097 y_offset = tmp_top;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15098
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15099 var tmp_width = viz.dendro_room.row + viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15100 var tmp_height = viz.cat_room.col + viz.uni_margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15101 d3.select(viz.viz_svg).append('rect').attr('fill', viz.background_color).attr('width', tmp_width).attr('height', tmp_height).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15102 return 'translate(' + x_offset + ',' + y_offset + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15103 }).classed('white_bars', true).classed('dendro_row_spillover', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15104 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15105
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15106 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15107 /* 165 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15108 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15109
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15110 /* eslint-disable */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15111
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15112 var run_segment = __webpack_require__(166);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15113 var play_intro = __webpack_require__(167);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15114 var play_zoom = __webpack_require__(169);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15115 var play_reset_zoom = __webpack_require__(170);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15116 var play_reorder_row = __webpack_require__(172);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15117 var play_reorder_buttons = __webpack_require__(173);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15118 var play_search = __webpack_require__(175);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15119 var play_filter = __webpack_require__(176);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15120 var quick_cluster = __webpack_require__(199);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15121 var play_groups = __webpack_require__(200);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15122 var play_categories = __webpack_require__(201);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15123 var play_conclusion = __webpack_require__(202);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15124 var toggle_play_button = __webpack_require__(203);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15125 var play_menu_button = __webpack_require__(204);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15126
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15127 module.exports = function play_demo() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15128
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15129 var cgm = this;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15130 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15131
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15132 if (d3.select(params.root + ' .running_demo').empty()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15133
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15134 // prevent more than one demo from running at once
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15135 d3.select(params.root + ' .play_button').classed('running_demo', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15136
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15137 toggle_play_button(params, false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15138
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15139 // prevent user interaction while playing
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15140 $.blockUI({ css: {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15141 border: 'none',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15142 padding: '15px',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15143 backgroundColor: '#000',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15144 '-webkit-border-radius': '10px',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15145 '-moz-border-radius': '10px',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15146 opacity: 0,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15147 color: '#fff',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15148 cursor: 'default'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15149 } });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15150
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15151 d3.selectAll('.blockUI').style('opacity', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15152
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15153 // intro text
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15154 var inst_time = 750;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15155
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15156 if (cgm.params.viz.is_expand === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15157 inst_time = run_segment(params, inst_time, quick_cluster);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15158 inst_time = inst_time - 1500;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15159 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15160
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15161 // clustergram interaction
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15162 ///////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15163 inst_time = run_segment(params, inst_time, play_intro);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15164 inst_time = run_segment(params, inst_time, play_zoom);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15165 inst_time = run_segment(cgm, inst_time, play_reset_zoom);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15166 inst_time = run_segment(params, inst_time, play_categories);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15167 inst_time = run_segment(params, inst_time, play_reorder_row);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15168
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15169 // sidebar interaction
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15170 ///////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15171 inst_time = run_segment(params, inst_time, play_menu_button);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15172 inst_time = run_segment(params, inst_time, play_groups);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15173 inst_time = run_segment(params, inst_time, play_reorder_buttons);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15174 inst_time = run_segment(params, inst_time, play_search);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15175 inst_time = run_segment(cgm, inst_time, play_filter);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15176
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15177 // conclusion
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15178 ///////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15179 inst_time = run_segment(params, inst_time, quick_cluster);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15180 inst_time = run_segment(params, inst_time, play_conclusion);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15181 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15182 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15183
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15184 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15185 /* 166 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15186 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15187
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15188
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15189 module.exports = function run_segment(segment_data, inst_time, inst_segment) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15190 /* eslint-disable */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15191
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15192 var timer = setTimeout(inst_segment().run, inst_time, segment_data);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15193
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15194 // set up kill demo that will stop setTimeouts
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15195 //////////////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15196 // if (clear_timer){
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15197 // clearTimeout(timer);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15198 // }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15199
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15200 var inst_duration = inst_segment().get_duration();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15201 inst_time = inst_time + inst_duration;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15202
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15203 return inst_time;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15204 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15205
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15206 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15207 /* 167 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15208 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15209
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15210 var demo_text = __webpack_require__(168);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15211
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15212 module.exports = function play_intro() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15213
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15214 var speed_up = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15215
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15216 function run(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15217 var text_1 = 'Clustergrammer allows users to generate\ninteractive and ' + 'sharable visualizations\nby uploading a matrix';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15218 var text_2 = "This demo will quickly overview some\nof Clustergrammer's " + "interactive features";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15219
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15220 setTimeout(demo_text, 0, params, text_1, 4500 / speed_up);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15221 setTimeout(demo_text, 4500 / speed_up, params, text_2, 4500 / speed_up);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15222 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15223
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15224 function get_duration() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15225 return 10000 / speed_up;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15226 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15227
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15228 return {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15229 run: run,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15230 get_duration: get_duration
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15231 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15232 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15233
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15234 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15235 /* 168 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15236 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15237
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15238 module.exports = function demo_text(params, text, read_duration) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15239
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15240 var split_text = text.split('\n');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15241
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15242 if (split_text.length < 3) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15243 split_text.push('');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15244 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15245
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15246 d3.select(params.root + ' .demo_group').style('opacity', 0).transition().duration(250).style('opacity', 1).transition().duration(250).delay(read_duration).style('opacity', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15247
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15248 for (var i = 0; i < split_text.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15249
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15250 var inst_text_num = i + 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15251
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15252 // make text box
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15253 //////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15254 var inst_text_obj = d3.select(params.root + ' .demo_group').select('#text_' + inst_text_num).text(split_text[i]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15255 var bbox = inst_text_obj[0][0].getBBox();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15256
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15257 var box_opacity = 0.9;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15258
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15259 var tmp_fs = Number(d3.select('.demo_group').select('text').style('font-size').replace('px', ''));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15260 var shift_height = tmp_fs * 1.3;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15261
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15262 d3.select(params.root + ' .demo_group').select('.rect_' + inst_text_num).style('fill', 'white').attr('width', bbox.width + 20).attr('height', bbox.height).attr('x', -10).attr('y', bbox.y + i * shift_height).style('opacity', box_opacity);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15263 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15264 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15265
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15266 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15267 /* 169 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15268 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15269
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15270 var demo_text = __webpack_require__(168);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15271 var two_translate_zoom = __webpack_require__(116);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15272
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15273 module.exports = function play_zoom() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15274
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15275 function run(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15276
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15277 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15278 var text = 'Zoom and pan by\nscrolling and dragging';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15279 demo_text(params, text, 4000);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15280
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15281 setTimeout(two_translate_zoom, 1500, cgm, 0, 0, 4);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15282 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15283
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15284 function get_duration() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15285 return 4000;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15286 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15287
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15288 return {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15289 run: run,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15290 get_duration: get_duration
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15291 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15292 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15293
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15294 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15295 /* 170 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15296 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15297
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15298 var demo_text = __webpack_require__(168);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15299 var two_translate_zoom = __webpack_require__(116);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15300 var sim_click = __webpack_require__(171);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15301
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15302 module.exports = function play_reset_zoom() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15303
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15304 function run(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15305
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15306 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15307
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15308 var text = 'Reset zoom by double-clicking\n';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15309 demo_text(params, text, 4000);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15310
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15311 setTimeout(sim_click, 2000, params, 'double', 300, 300);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15312 setTimeout(two_translate_zoom, 2400, cgm, 0, 0, 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15313 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15314
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15315 function get_duration() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15316 return 4500;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15317 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15318
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15319 return {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15320 run: run,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15321 get_duration: get_duration
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15322 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15323 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15324
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15325 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15326 /* 171 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15327 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15328
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15329 module.exports = function sim_click(params, single_double, pos_x, pos_y) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15330
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15331 var click_duration = 200;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15332
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15333 var click_circle = d3.select(params.root + ' .viz_svg').append('circle').attr('cx', pos_x).attr('cy', pos_y).attr('r', 25).style('stroke', 'black').style('stroke-width', '3px').style('fill', '#007f00').style('opacity', 0.5);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15334
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15335 if (single_double === 'double') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15336 click_circle.transition().duration(click_duration).style('opacity', 0.0).transition().duration(50).style('opacity', 0.5).transition().duration(click_duration).style('opacity', 0.0).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15337 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15338 click_circle.transition().duration(click_duration).style('opacity', 0.0).transition().duration(250).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15339 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15340 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15341
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15342 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15343 /* 172 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15344 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15345
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15346 var demo_text = __webpack_require__(168);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15347 var sim_click = __webpack_require__(171);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15348
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15349 module.exports = function play_reorder_row() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15350 /* eslint-disable */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15351
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15352 function run(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15353
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15354 var text = 'Reorder the matrix based on a single\nrow or column by double-clicking a\nlabel';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15355 demo_text(params, text, 7000);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15356
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15357 var inst_element = get_row_element(params, 'EGFR');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15358
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15359 var group_trans = d3.select(inst_element).attr('transform');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15360
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15361 var container_trans = d3.select(params.root + ' .clust_container').attr('transform').split(',')[1].replace(')', '');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15362
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15363 var x_trans = params.viz.norm_labels.width.row * 0.9;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15364
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15365 var row_trans = group_trans.split(',')[1].replace(')', '');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15366 var y_trans = String(Number(row_trans) + Number(container_trans) + params.viz.rect_height / 2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15367
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15368 var wait_click = 4000;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15369 setTimeout(sim_click, wait_click, params, 'double', x_trans, y_trans);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15370 var wait_reorder = wait_click + 300;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15371 setTimeout(fire_double_click_row, wait_reorder, params, inst_element);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15372 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15373
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15374 function get_duration() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15375 return 8000;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15376 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15377
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15378 function get_row_element(params, inst_row) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15379
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15380 var inst_element = d3.selectAll(params.root + ' .row_label_group').filter(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15381 var inst_data = this.__data__;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15382 return inst_data.name == inst_row;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15383 })[0][0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15384
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15385 return inst_element;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15386 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15387
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15388 function fire_double_click_row(params, inst_element) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15389
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15390 $(inst_element).d3DblClick();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15391 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15392
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15393 // allows doubleclicking on d3 element
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15394 jQuery.fn.d3DblClick = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15395 this.each(function (i, e) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15396 var evt = document.createEvent("MouseEvents");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15397 evt.initMouseEvent("dblclick", true, true, window, 0, 0, 0, 0, 0, false, false, false, false, 0, null);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15398 e.dispatchEvent(evt);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15399 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15400 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15401
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15402 return {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15403 run: run,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15404 get_duration: get_duration
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15405 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15406 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15407
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15408 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15409 /* 173 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15410 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15411
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15412 var demo_text = __webpack_require__(168);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15413 var highlight_sidebar_element = __webpack_require__(174);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15414
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15415 module.exports = function play_reorder_buttons() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15416 /* eslint-disable */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15417
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15418 function run(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15419
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15420 var text = 'Reorder all rows and columns\nby clicking the reorder\n buttons';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15421 demo_text(params, text, 9000);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15422
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15423 setTimeout(highlight_sidebar_element, 3000, params, 'toggle_col_order');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15424 setTimeout(click_reorder_button, 3500, params, 'col', 'rank');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15425
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15426 setTimeout(highlight_sidebar_element, 7000, params, 'toggle_row_order');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15427 setTimeout(click_reorder_button, 7500, params, 'row', 'rank');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15428 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15429
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15430 function get_duration() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15431 return 11000;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15432 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15433
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15434 function click_reorder_button(params, inst_rc, inst_order) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15435 var inst_button = d3.selectAll('.toggle_' + inst_rc + '_order .btn').filter(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15436 return this.__data__ == inst_order;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15437 })[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15438
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15439 $(inst_button).click();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15440 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15441
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15442 return {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15443 run: run,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15444 get_duration: get_duration
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15445 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15446 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15447
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15448 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15449 /* 174 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15450 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15451
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15452 module.exports = function highlight_sidebar_element(params, highlight_class, duration = 4000) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15453
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15454 if (highlight_class.indexOf('slider') < 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15455 d3.select(params.root + ' .' + highlight_class).style('background', '#007f00').style('box-shadow', '0px 0px 10px 5px #007f00').transition().duration(1).delay(duration).style('background', '#FFFFFF').style('box-shadow', 'none');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15456 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15457 d3.select(params.root + ' .' + highlight_class).style('box-shadow', '0px 0px 10px 5px #007f00').transition().duration(1).delay(duration).style('box-shadow', 'none');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15458 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15459 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15460
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15461 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15462 /* 175 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15463 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15464
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15465 var demo_text = __webpack_require__(168);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15466 var highlight_sidebar_element = __webpack_require__(174);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15467 var two_translate_zoom = __webpack_require__(116);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15468
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15469 module.exports = function play_search() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15470
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15471 function run(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15472
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15473 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15474 var text = 'Search for rows using\nthe search box';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15475 demo_text(params, text, 5000);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15476
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15477 var ini_delay = 2500;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15478 setTimeout(highlight_sidebar_element, ini_delay, params, 'gene_search_container');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15479
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15480 // manually mimic typing and autocomplete
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15481 setTimeout(type_out_search, ini_delay + 1000, params, 'E');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15482 setTimeout(type_out_search, ini_delay + 1500, params, 'EG');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15483 setTimeout(type_out_search, ini_delay + 2000, params, 'EGF');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15484 setTimeout(type_out_search, ini_delay + 2500, params, 'EGFR');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15485
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15486 setTimeout(run_search, 5500, params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15487
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15488 setTimeout(two_translate_zoom, 7500, cgm, 0, 0, 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15489 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15490
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15491 function get_duration() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15492 return 10000;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15493 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15494
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15495 function type_out_search(params, inst_string) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15496 $(params.root + ' .gene_search_box').val(inst_string);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15497 $(params.root + ' .gene_search_box').autocomplete("search", inst_string);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15498 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15499
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15500 function run_search(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15501 $(params.root + ' .submit_gene_button').click();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15502 $(params.root + ' .gene_search_box').autocomplete("search", '');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15503 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15504
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15505 return {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15506 run: run,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15507 get_duration: get_duration
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15508 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15509 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15510
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15511 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15512 /* 176 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15513 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15514
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15515 var demo_text = __webpack_require__(168);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15516 var highlight_sidebar_element = __webpack_require__(174);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15517 var update_viz_with_view = __webpack_require__(177);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15518
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15519 module.exports = function play_filter() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15520
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15521 function run(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15522 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15523
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15524 var text = 'Filter rows based on sum or\nvariance using the sliders';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15525 demo_text(params, text, 4000);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15526
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15527 var filter_type = 'N_row_sum';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15528
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15529 setTimeout(highlight_sidebar_element, 5000, params, 'slider_' + filter_type, 13000);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15530
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15531 text = 'Filter: Top 20 rows by sum';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15532 setTimeout(demo_text, 5000, params, text, 4000);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15533 setTimeout(run_update, 5300, cgm, filter_type, 20, 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15534
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15535 text = 'Filter: Top 10 rows by sum';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15536 setTimeout(demo_text, 10000, params, text, 4000);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15537 setTimeout(run_update, 10300, cgm, filter_type, 10, 2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15538
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15539 text = 'Filter: All rows';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15540 setTimeout(demo_text, 15000, params, text, 4000);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15541 setTimeout(run_update, 15300, cgm, filter_type, 'all', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15542 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15543
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15544 function get_duration() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15545 return 19500;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15546 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15547
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15548 function run_update(cgm, filter_type, filter_value, filter_index) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15549
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15550 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15551
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15552 var requested_view = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15553 requested_view[filter_type] = filter_value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15554 update_viz_with_view(cgm, requested_view);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15555
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15556 // quick fix for slider
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15557 $(params.root + ' .slider_' + filter_type).slider("value", filter_index);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15558
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15559 var unit_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15560 if (filter_type === 'N_row_sum') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15561 unit_name = 'sum';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15562 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15563 unit_name = 'variance';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15564 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15565
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15566 d3.select(params.root + ' .title_' + filter_type).text('Top rows ' + unit_name + ': ' + filter_value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15567 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15568
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15569 return {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15570 run: run,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15571 get_duration: get_duration
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15572 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15573 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15574
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15575 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15576 /* 177 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15577 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15578
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15579 var make_network_using_view = __webpack_require__(10);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15580 var disable_sidebar = __webpack_require__(178);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15581 var update_viz_with_network = __webpack_require__(179);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15582
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15583 module.exports = function update_viz_with_view(cgm, requested_view) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15584
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15585 disable_sidebar(cgm.params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15586
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15587 // make new_network_data by filtering the original network data
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15588 var new_network_data = make_network_using_view(cgm.config, cgm.params, requested_view);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15589
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15590 // reset crop button
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15591 d3.select(cgm.params.root + ' .crop_button').style('color', '#337ab7').classed('fa-crop', true).classed('fa-undo', false).classed('active_cropping', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15592
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15593 // reset dendrogram filtering when updating with a new view
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15594 // e.g. with the row filter sliders
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15595 _.each(['row', 'col'], function (inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15596
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15597 // set class to reflect that no filtering was ran
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15598 d3.select(cgm.params.root + ' .' + inst_rc + '_dendro_icons_group').classed('ran_filter', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15599
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15600 // display all crop buttons when cropping has not been done
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15601 d3.select(cgm.params.root + ' .' + inst_rc + '_dendro_icons_container').style('display', 'block');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15602 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15603
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15604 update_viz_with_network(cgm, new_network_data);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15605 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15606
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15607 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15608 /* 178 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15609 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15610
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15611 module.exports = function disable_sidebar(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15612
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15613 d3.selectAll(params.root + ' .btn').attr('disabled', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15614 d3.select(params.viz.viz_svg).style('opacity', 0.70);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15615 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15616
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15617 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15618 /* 179 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15619 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15620
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15621 var make_params = __webpack_require__(9);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15622 var define_enter_exit_delays = __webpack_require__(180);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15623 var enter_exit_update = __webpack_require__(181);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15624 var initialize_resizing = __webpack_require__(123);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15625 var make_col_cat = __webpack_require__(152);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15626 var make_row_cat = __webpack_require__(158);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15627 var make_row_dendro = __webpack_require__(159);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15628 var make_col_dendro = __webpack_require__(160);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15629 var ini_sidebar = __webpack_require__(192);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15630 var enable_sidebar = __webpack_require__(194);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15631 var ini_doubleclick = __webpack_require__(133);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15632 var update_reorder_buttons = __webpack_require__(195);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15633 var make_row_cat_super_labels = __webpack_require__(122);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15634 var modify_row_node_cats = __webpack_require__(196);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15635 var run_zoom = __webpack_require__(125);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15636 var ds_enter_exit_update = __webpack_require__(198);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15637 var make_cat_params = __webpack_require__(32);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15638
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15639 module.exports = function update_viz_with_network(cgm, new_network_data) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15640
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15641 // console.log('UPDATE VIZ WITH NETWORK')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15642
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15643 // set runnning_update class, prevents multiple update from running at once
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15644 d3.select(cgm.params.viz.viz_svg).classed('running_update', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15645
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15646 // remove downsampled rows always
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15647 d3.selectAll(cgm.params.root + ' .ds' + String(cgm.params.viz.ds_level) + '_row').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15648
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15649 // run optional callback function
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15650 // console.log('before and after matrix_update_callback')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15651 // console.log(new_network_data.row_nodes[0]['cat-0'])
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15652 if (cgm.params.matrix_update_callback != null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15653 cgm.params.matrix_update_callback();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15654 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15655 // console.log(new_network_data.row_nodes[0]['cat-0'])
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15656
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15657 var inst_group_level = cgm.params.group_level;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15658 var inst_crop_fitler = cgm.params.crop_filter_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15659
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15660 // make tmp config to make new params
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15661 var tmp_config = jQuery.extend(true, {}, cgm.config);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15662
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15663 var new_row_cats = null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15664
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15665 // bring in 'new' category data
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15666 if (cgm.params.new_row_cats != null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15667 modify_row_node_cats(cgm.params.new_row_cats, new_network_data.row_nodes);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15668 new_row_cats = cgm.params.new_row_cats;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15669 cgm.params.new_row_cats = new_row_cats;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15670 // do not preserve the updated (row) cats
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15671 var predefined_cat_colors = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15672 cgm.params.viz = make_cat_params(cgm.params, cgm.params.viz, predefined_cat_colors);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15673 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15674
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15675 tmp_config.network_data = new_network_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15676 tmp_config.inst_order = cgm.params.viz.inst_order;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15677 tmp_config.input_domain = cgm.params.matrix.opacity_scale.domain()[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15678
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15679 update_reorder_buttons(tmp_config, cgm.params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15680
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15681 // tmp_config.ini_expand = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15682 tmp_config.ini_view = null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15683 tmp_config.current_col_cat = cgm.params.current_col_cat;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15684
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15685 // disabled, causing problems when cropping
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15686 // always preserve category colors when updating
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15687 tmp_config.cat_colors = cgm.params.viz.cat_colors;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15688
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15689 var new_params = make_params(tmp_config);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15690
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15691 // this function is sensitive to further updates, so run here
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15692 var delays = define_enter_exit_delays(cgm.params, new_params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15693
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15694 // pass the newly calcluated params back to the cgm object
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15695 cgm.params = new_params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15696
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15697 // set up zoom
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15698 cgm.params.zoom_behavior = d3.behavior.zoom().scaleExtent([1, cgm.params.viz.square_zoom * cgm.params.viz.zoom_ratio.x]).on('zoom', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15699 run_zoom(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15700 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15701
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15702 // have persistent group levels while updating
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15703 cgm.params.group_level = inst_group_level;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15704
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15705 // have persistent crop_filter_nodes while updating
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15706 cgm.params.crop_filter_nodes = inst_crop_fitler;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15707
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15708 // only run enter-exit-updates if there is no downsampling
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15709 if (cgm.params.viz.ds_num_levels === 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15710 // new_network_data is necessary
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15711 enter_exit_update(cgm, new_network_data, delays);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15712 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15713 ds_enter_exit_update(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15714 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15715
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15716 // reduce opacity during update
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15717 d3.select(cgm.params.viz.viz_svg).style('opacity', 0.70);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15718
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15719 make_row_cat(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15720 make_row_cat_super_labels(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15721
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15722 if (cgm.params.viz.show_categories.col) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15723 make_col_cat(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15724 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15725
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15726 if (cgm.params.viz.show_dendrogram) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15727 make_row_dendro(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15728 make_col_dendro(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15729 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15730
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15731 initialize_resizing(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15732
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15733 d3.select(cgm.params.viz.viz_svg).call(cgm.params.zoom_behavior);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15734
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15735 ini_doubleclick(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15736
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15737 ini_sidebar(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15738
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15739 cgm.params.viz.run_trans = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15740
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15741 // d3.selectAll(cgm.params.viz.root_tips)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15742 // .style('opacity',0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15743
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15744 setTimeout(enable_sidebar, 2500, cgm.params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15745
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15746 // remove all dendro shadows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15747 setTimeout(remove_shadows, 50);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15748 setTimeout(remove_shadows, 100);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15749 setTimeout(remove_shadows, 500);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15750 setTimeout(remove_shadows, 1000);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15751 setTimeout(remove_shadows, 1500);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15752
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15753 function remove_shadows() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15754 d3.selectAll('.dendro_shadow').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15755 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15756
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15757 function finish_update() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15758 d3.select(cgm.params.viz.viz_svg).transition().duration(250).style('opacity', 1.0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15759
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15760 setTimeout(finish_update_class, 1000);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15761 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15762
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15763 setTimeout(finish_update, delays.enter);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15764
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15765 function finish_update_class() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15766 d3.select(cgm.params.viz.viz_svg).classed('running_update', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15767 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15768 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15769
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15770 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15771 /* 180 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15772 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15773
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15774 module.exports = function (old_params, params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15775
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15776 // exit, update, enter
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15777
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15778 // check if exit or enter or both are required
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15779 var old_row_nodes = old_params.network_data.row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15780 var old_col_nodes = old_params.network_data.col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15781 var old_row = _.map(old_row_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15782 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15783 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15784 var old_col = _.map(old_col_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15785 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15786 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15787 var all_old_nodes = old_row.concat(old_col);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15788
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15789 var row_nodes = params.network_data.row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15790 var col_nodes = params.network_data.col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15791 var row = _.map(row_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15792 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15793 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15794 var col = _.map(col_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15795 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15796 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15797 var all_nodes = row.concat(col);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15798
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15799 var exit_nodes = _.difference(all_old_nodes, all_nodes).length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15800 var enter_nodes = _.difference(all_nodes, all_old_nodes).length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15801
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15802 var delays = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15803
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15804 if (exit_nodes > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15805 delays.update = 1000;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15806 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15807 delays.update = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15808 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15809
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15810 if (enter_nodes > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15811 delays.enter = 1000;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15812 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15813 delays.enter = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15814 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15815
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15816 delays.enter = delays.enter + delays.update;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15817
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15818 delays.run_transition = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15819
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15820 var old_num_links = old_params.network_data.links.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15821 var new_num_links = params.network_data.links.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15822 var cutoff_num_links = 0.5 * params.matrix.def_large_matrix;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15823
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15824 if (old_num_links > cutoff_num_links \|\| new_num_links > cutoff_num_links) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15825 delays.run_transition = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15826 delays.update = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15827 delays.enter = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15828 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15829
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15830 return delays;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15831 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15832
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15833 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15834 /* 181 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15835 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15836
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15837 var reset_size_after_update = __webpack_require__(182);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15838 var make_row_label_container = __webpack_require__(49);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15839 var make_col_label_container = __webpack_require__(103);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15840 var eeu_existing_row = __webpack_require__(183);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15841 var exit_components = __webpack_require__(187);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15842 var draw_gridlines = __webpack_require__(39);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15843 var enter_row_groups = __webpack_require__(188);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15844 var resize_containers = __webpack_require__(191);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15845 var label_constrain_and_trim = __webpack_require__(117);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15846 var d3_tip_custom = __webpack_require__(48);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15847
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15848 module.exports = function enter_exit_update(cgm, network_data, delays) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15849
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15850 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15851
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15852 // remove old tooltips
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15853 d3.selectAll(params.viz.root_tips).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15854
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15855 // d3-tooltip - for tiles
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15856 var tip = d3_tip_custom().attr('class', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15857 var root_tip_selector = params.viz.root_tips.replace('.', '');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15858 var class_string = root_tip_selector + ' d3-tip ' + root_tip_selector + '_tile_tip';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15859 return class_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15860 }).direction('nw').offset([0, 0]).style('display', 'none').html(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15861 var inst_value = String(d.value.toFixed(3));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15862 var tooltip_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15863
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15864 if (params.keep_orig) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15865 var orig_value = String(d.value_orig.toFixed(3));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15866 tooltip_string = '<p>' + d.row_name + ' and ' + d.col_name + '</p>' + '<p> normalized value: ' + inst_value + '</p>' + '<div> original value: ' + orig_value + '</div>';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15867 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15868 tooltip_string = '<p>' + d.row_name + ' and ' + d.col_name + '</p>' + '<div> value: ' + inst_value + '</div>';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15869 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15870
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15871 return tooltip_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15872 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15873
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15874 d3.select(params.root + ' .clust_group').call(tip);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15875
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15876 // necessary for repositioning clust, col and col-cat containers
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15877 resize_containers(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15878
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15879 var duration = 1000;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15880
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15881 // make global so that names can be accessed
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15882 var row_nodes = network_data.row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15883 var col_nodes = network_data.col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15884 var links = network_data.links;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15885
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15886 //
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15887 var tile_data = links;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15888
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15889 // add name to links for object constancy
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15890 for (var i = 0; i < tile_data.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15891 var d = tile_data[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15892 tile_data[i].name = row_nodes[d.source].name + '_' + col_nodes[d.target].name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15893 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15894
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15895 // move rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15896 var move_rows = d3.select(params.root + ' .clust_group').selectAll('.row').data(params.matrix.matrix, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15897 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15898 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15899
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15900 if (delays.run_transition) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15901 move_rows.transition().delay(delays.update).duration(duration).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15902 var tmp_index = d.row_index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15903 return 'translate(0,' + params.viz.y_scale(tmp_index) + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15904 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15905 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15906 move_rows.attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15907 var tmp_index = d.row_index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15908 return 'translate(0,' + params.viz.y_scale(tmp_index) + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15909 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15910 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15911
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15912 // update existing rows - enter, exit, update tiles in existing row
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15913 d3.select(params.root + ' .clust_group').selectAll('.row').each(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15914 // TODO add tip back to arguments
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15915 var inst_selection = this;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15916 eeu_existing_row(params, d, delays, duration, inst_selection, tip);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15917 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15918
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15919 d3.selectAll(params.root + ' .horz_lines').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15920 d3.selectAll(params.root + ' .vert_lines').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15921
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15922 // exit
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15923 ////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15924 exit_components(params, delays, duration);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15925
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15926 // resize clust components using appropriate delays
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15927 reset_size_after_update(cgm, duration, delays);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15928
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15929 // enter new elements
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15930 //////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15931 enter_row_groups(params, delays, duration, tip);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15932
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15933 // update existing rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15934 make_row_label_container(cgm, duration);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15935 make_col_label_container(cgm, duration);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15936
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15937 draw_gridlines(params, delays, duration);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15938
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15939 setTimeout(label_constrain_and_trim, 2000, params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15940 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15941
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15942 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15943 /* 182 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15944 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15945
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15946 var utils = __webpack_require__(2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15947 var calc_clust_height = __webpack_require__(22);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15948 var get_svg_dim = __webpack_require__(19);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15949 var calc_clust_width = __webpack_require__(21);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15950 var reset_zoom = __webpack_require__(134);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15951 var resize_dendro = __webpack_require__(135);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15952 var resize_super_labels = __webpack_require__(136);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15953 var resize_spillover = __webpack_require__(137);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15954 var resize_row_labels = __webpack_require__(139);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15955 var resize_row_viz = __webpack_require__(141);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15956 var resize_col_labels = __webpack_require__(142);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15957 var resize_col_text = __webpack_require__(143);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15958 var resize_col_triangle = __webpack_require__(144);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15959 var resize_col_hlight = __webpack_require__(145);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15960 var resize_label_bars = __webpack_require__(148);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15961 var calc_default_fs = __webpack_require__(31);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15962 var calc_zoom_switching = __webpack_require__(30);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15963 // var show_visible_area = require('../zoom/show_visible_area');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15964 var ini_zoom_info = __webpack_require__(36);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15965
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15966 module.exports = function reset_size_after_update(cgm, duration = 0, delays = null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15967
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15968 if (delays === null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15969 delays = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15970 delays.enter = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15971 delays.update = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15972 delays.run_transition = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15973 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15974
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15975 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15976
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15977 var row_nodes = cgm.params.network_data.row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15978
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15979 params.zoom_info = ini_zoom_info();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15980
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15981 // // not sure if this is necessary
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15982 // ////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15983 // show_visible_area(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15984 // // quick fix for column filtering
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15985 // setTimeout(show_visible_area, 2200, cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15986
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15987 var row_nodes_names = params.network_data.row_nodes_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15988
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15989 reset_zoom(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15990
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15991 // Resetting some visualization parameters
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15992 params = get_svg_dim(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15993 params.viz = calc_clust_width(params.viz);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15994 params.viz = calc_clust_height(params.viz);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15995
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15996 if (params.sim_mat) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15997 if (params.viz.clust.dim.width <= params.viz.clust.dim.height) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15998 params.viz.clust.dim.height = params.viz.clust.dim.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	15999 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16000 params.viz.clust.dim.width = params.viz.clust.dim.height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16001 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16002 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16003
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16004 params.viz = calc_zoom_switching(params.viz);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16005
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16006 // redefine x_scale and y_scale rangeBands
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16007 params.viz.x_scale.rangeBands([0, params.viz.clust.dim.width]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16008 params.viz.y_scale.rangeBands([0, params.viz.clust.dim.height]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16009
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16010 // redefine zoom extent
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16011 params.viz.square_zoom = params.viz.norm_labels.width.col / (params.viz.x_scale.rangeBand() / 2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16012 params.zoom_behavior.scaleExtent([1, params.viz.square_zoom * params.viz.zoom_ratio.x]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16013
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16014 // redefine border width
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16015 params.viz.border_width.x = params.viz.x_scale.rangeBand() / params.viz.border_fraction;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16016 params.viz.border_width.y = params.viz.y_scale.rangeBand() / params.viz.border_fraction;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16017
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16018 params = calc_default_fs(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16019
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16020 // resize the svg
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16021 ///////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16022 var svg_group = d3.select(params.viz.viz_wrapper).select('svg');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16023
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16024 svg_group.select(params.root + ' .grey_background').transition().delay(delays.update).duration(duration).attr('width', params.viz.clust.dim.width).attr('height', params.viz.clust.dim.height);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16025
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16026 resize_row_labels(params, svg_group, delays);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16027
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16028 // do not delay the font size change since this will break the bounding box calc
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16029 svg_group.selectAll('.row_label_group').select('text').style('font-size', params.labels.default_fs_row + 'px').text(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16030 return utils.normal_name(d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16031 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16032
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16033 // change the size of the highlighting rects
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16034 svg_group.selectAll('.row_label_group').each(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16035 var bbox = d3.select(this).select('text')[0][0].getBBox();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16036 d3.select(this).select('rect').attr('x', bbox.x).attr('y', 0).attr('width', bbox.width).attr('height', params.viz.y_scale.rangeBand()).style('fill', 'yellow').style('opacity', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16037 var inst_opacity = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16038 // highlight target genes
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16039 if (d.target === 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16040 inst_opacity = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16041 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16042 return inst_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16043 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16044 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16045
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16046 resize_row_viz(params, svg_group, delays);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16047
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16048 if (delays.run_transition) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16049
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16050 // positioning row text after row text size may have been reduced
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16051 svg_group.selectAll('.row_label_group').select('text').transition().delay(delays.update).duration(duration).attr('y', params.viz.rect_height * 0.5 + params.labels.default_fs_row * 0.35);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16052
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16053 svg_group.selectAll('.row_cat_group').data(row_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16054 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16055 }).transition().delay(delays.update).duration(duration).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16056 var inst_index = _.indexOf(row_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16057 return 'translate(0, ' + params.viz.y_scale(inst_index) + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16058 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16059
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16060 svg_group.selectAll('.row_cat_group').select('path').transition().delay(delays.update).duration(duration).attr('d', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16061 var origin_x = params.viz.cat_room.symbol_width - 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16062 var origin_y = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16063 var mid_x = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16064 var mid_y = params.viz.y_scale.rangeBand() / 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16065 var final_x = params.viz.cat_room.symbol_width - 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16066 var final_y = params.viz.y_scale.rangeBand();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16067 var output_string = 'M ' + origin_x + ',' + origin_y + ' L ' + mid_x + ',' + mid_y + ', L ' + final_x + ',' + final_y + ' Z';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16068 return output_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16069 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16070
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16071 svg_group.selectAll('.row_dendro_group').data(row_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16072 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16073 }).transition().delay(delays.update).duration(duration).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16074 var inst_index = _.indexOf(row_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16075 return 'translate(0, ' + params.viz.y_scale(inst_index) + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16076 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16077 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16078
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16079 // positioning row text after row text size may have been reduced
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16080 svg_group.selectAll('.row_label_group').select('text').attr('y', params.viz.rect_height * 0.5 + params.labels.default_fs_row * 0.35);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16081
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16082 svg_group.selectAll('.row_cat_group').data(row_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16083 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16084 }).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16085 var inst_index = _.indexOf(row_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16086 return 'translate(0, ' + params.viz.y_scale(inst_index) + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16087 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16088
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16089 svg_group.selectAll('.row_cat_group').select('path').attr('d', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16090 var origin_x = params.viz.cat_room.symbol_width - 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16091 var origin_y = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16092 var mid_x = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16093 var mid_y = params.viz.y_scale.rangeBand() / 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16094 var final_x = params.viz.cat_room.symbol_width - 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16095 var final_y = params.viz.y_scale.rangeBand();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16096 var output_string = 'M ' + origin_x + ',' + origin_y + ' L ' + mid_x + ',' + mid_y + ', L ' + final_x + ',' + final_y + ' Z';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16097 return output_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16098 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16099
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16100 svg_group.selectAll('.row_dendro_group').data(row_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16101 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16102 }).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16103 var inst_index = _.indexOf(row_nodes_names, d.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16104 return 'translate(0, ' + params.viz.y_scale(inst_index) + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16105 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16106 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16107
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16108 if (utils.has(params.network_data.row_nodes[0], 'value')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16109
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16110 resize_label_bars(cgm, svg_group);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16111 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16112
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16113 // resize col labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16114 ///////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16115 // reduce width of rotated rects
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16116
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16117 resize_col_labels(params, svg_group, delays);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16118 resize_col_text(params, svg_group);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16119 resize_col_triangle(params, svg_group, delays);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16120
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16121 resize_col_hlight(params, svg_group, delays);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16122
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16123 resize_dendro(params, svg_group, delays);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16124 resize_super_labels(params, svg_group, delays);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16125 resize_spillover(params.viz, svg_group, delays);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16126
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16127 // reset zoom and translate
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16128 params.zoom_behavior.scale(1).translate([params.viz.clust.margin.left, params.viz.clust.margin.top]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16129 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16130
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16131 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16132 /* 183 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16133 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16134
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16135 var exit_existing_row = __webpack_require__(184);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16136 var enter_existing_row = __webpack_require__(185);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16137 var update_split_tiles = __webpack_require__(186);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16138 var mouseover_tile = __webpack_require__(45);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16139 var mouseout_tile = __webpack_require__(46);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16140 var fine_position_tile = __webpack_require__(47);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16141
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16142 // TODO add tip back to arguments
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16143 module.exports = function eeu_existing_row(params, ini_inp_row_data, delays, duration, row_selection, tip) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16144
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16145 var inp_row_data = ini_inp_row_data.row_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16146
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16147 // remove zero values from
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16148 var row_values = _.filter(inp_row_data, function (num) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16149 return num.value != 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16150 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16151
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16152 // bind data to tiles
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16153 var cur_row_tiles = d3.select(row_selection).selectAll('.tile').data(row_values, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16154 return d.col_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16155 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16156
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16157 exit_existing_row(params, delays, cur_row_tiles, inp_row_data, row_selection);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16158
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16159 ///////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16160 // Update
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16161 ///////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16162
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16163 // update tiles in x direction
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16164 var update_row_tiles = cur_row_tiles.on('mouseover', function (...args) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16165 mouseover_tile(params, this, tip, args);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16166 }).on('mouseout', function mouseout() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16167 mouseout_tile(params, this, tip);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16168 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16169
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16170 var col_nodes_names = params.network_data.col_nodes_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16171
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16172 if (delays.run_transition) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16173
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16174 update_row_tiles.transition().delay(delays.update).duration(duration).attr('width', params.viz.rect_width).attr('height', params.viz.rect_height).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16175 if (_.contains(col_nodes_names, d.col_name)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16176 return fine_position_tile(params, d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16177 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16178 return 'translate(0,0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16179 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16180 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16181 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16182 update_row_tiles.attr('width', params.viz.rect_width).attr('height', params.viz.rect_height).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16183 if (_.contains(col_nodes_names, d.col_name)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16184 return fine_position_tile(params, d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16185 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16186 return 'translate(0,0)';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16187 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16188 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16189 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16190
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16191 if (params.matrix.tile_type == 'updn') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16192 update_split_tiles(params, inp_row_data, row_selection, delays, duration, cur_row_tiles, tip);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16193 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16194
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16195 enter_existing_row(params, delays, duration, cur_row_tiles, tip);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16196 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16197
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16198 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16199 /* 184 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16200 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16201
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16202 module.exports = function exit_existing_row(params, delays, cur_row_tiles, inp_row_data, row_selection) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16203
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16204 if (delays.run_transition) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16205 cur_row_tiles.exit().transition().duration(300).attr('fill-opacity', 0).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16206 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16207 cur_row_tiles.exit().attr('fill-opacity', 0).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16208 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16209
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16210 if (params.matrix.tile_type == 'updn') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16211
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16212 // value split
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16213 var row_split_data = _.filter(inp_row_data, function (num) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16214 return num.value_up != 0 \|\| num.value_dn != 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16215 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16216
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16217 // tile_up
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16218 var cur_tiles_up = d3.select(row_selection).selectAll('.tile_up').data(row_split_data, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16219 return d.col_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16220 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16221
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16222 if (delays.run_transition) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16223 cur_tiles_up.exit().transition().duration(300).attr('fill', '0').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16224 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16225 cur_tiles_up.exit().attr('fill', 0).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16226 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16227
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16228 // tile_dn
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16229 var cur_tiles_dn = d3.select(row_selection).selectAll('.tile_dn').data(row_split_data, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16230 return d.col_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16231 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16232
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16233 if (delays.run_transition) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16234 cur_tiles_dn.exit().transition().duration(300).attr('fill', 0).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16235 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16236 cur_tiles_dn.exit().attr('fill', 0).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16237 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16238 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16239 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16240
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16241 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16242 /* 185 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16243 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16244
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16245 var mouseover_tile = __webpack_require__(45);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16246 var mouseout_tile = __webpack_require__(46);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16247 var fine_position_tile = __webpack_require__(47);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16248
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16249 module.exports = function enter_existing_row(params, delays, duration, cur_row_tiles, tip) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16250
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16251 // enter new tiles
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16252 var new_tiles = cur_row_tiles.enter().append('rect').attr('class', 'tile row_tile').attr('width', params.viz.rect_width).attr('height', params.viz.rect_height).on('mouseover', function (...args) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16253 mouseover_tile(params, this, tip, args);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16254 }).on('mouseout', function mouseout() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16255 mouseout_tile(params, this, tip);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16256 }).attr('fill-opacity', 0).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16257 return fine_position_tile(params, d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16258 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16259
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16260 if (delays.run_transition) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16261 new_tiles.transition().delay(delays.enter).duration(duration).style('fill', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16262 return d.value > params.matrix.mid_val ? params.matrix.tile_colors[0] : params.matrix.tile_colors[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16263 }).attr('fill-opacity', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16264 var op_val = 0, output_opacity = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16265 op_val = params.matrix.mid_val + Math.abs(d.value - params.matrix.mid_val);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16266 output_opacity = params.matrix.opacity_scale(op_val);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16267 return output_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16268 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16269 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16270 new_tiles.style('fill', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16271 return d.value > params.matrix.mid_val ? params.matrix.tile_colors[0] : params.matrix.tile_colors[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16272 }).attr('fill-opacity', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16273 var op_val = 0, output_opacity = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16274 op_val = params.matrix.mid_val + Math.abs(d.value - params.matrix.mid_val);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16275 output_opacity = params.matrix.opacity_scale(Math.abs(op_val));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16276 return output_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16277 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16278 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16279
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16280 // remove new tiles if necessary
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16281 new_tiles.each(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16282 if (Math.abs(d.value_up) > 0 && Math.abs(d.value_dn) > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16283 d3.select(this).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16284 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16285 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16286 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16287
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16288 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16289 /* 186 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16290 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16291
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16292 var draw_up_tile = __webpack_require__(43);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16293 var draw_dn_tile = __webpack_require__(44);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16294 var mouseover_tile = __webpack_require__(45);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16295 var mouseout_tile = __webpack_require__(46);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16296 var fine_position_tile = __webpack_require__(47);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16297
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16298 module.exports = function update_split_tiles(params, inp_row_data, row_selection, delays, duration, cur_row_tiles, tip) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16299
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16300 // value split
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16301 var row_split_data = _.filter(inp_row_data, function (num) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16302 return num.value_up != 0 \|\| num.value_dn != 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16303 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16304
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16305 // tile_up
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16306 var cur_tiles_up = d3.select(row_selection).selectAll('.tile_up').data(row_split_data, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16307 return d.col_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16308 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16309
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16310 // update split tiles_up
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16311 var update_tiles_up = cur_tiles_up.on('mouseover', function (...args) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16312 mouseover_tile(params, this, tip, args);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16313 }).on('mouseout', function mouseout() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16314 mouseout_tile(params, this, tip);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16315 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16316
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16317 if (delays.run_transition) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16318 update_tiles_up.transition().delay(delays.update).duration(duration).attr('d', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16319 return draw_up_tile(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16320 }).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16321 return fine_position_tile(params, d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16322 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16323 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16324 update_tiles_up.attr('d', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16325 return draw_up_tile(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16326 }).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16327 return fine_position_tile(params, d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16328 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16329 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16330
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16331 // tile_dn
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16332 var cur_tiles_dn = d3.select(row_selection).selectAll('.tile_dn').data(row_split_data, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16333 return d.col_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16334 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16335
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16336 // update split tiles_dn
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16337 var update_tiles_dn = cur_tiles_dn.on('mouseover', function (...args) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16338 mouseover_tile(params, this, tip, args);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16339 }).on('mouseout', function mouseout() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16340 mouseout_tile(params, this, tip);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16341 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16342
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16343 if (delays.run_transition) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16344 update_tiles_dn.transition().delay(delays.update).duration(duration).attr('d', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16345 return draw_dn_tile(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16346 }).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16347 return fine_position_tile(params, d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16348 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16349 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16350 update_tiles_dn.attr('d', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16351 return draw_dn_tile(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16352 }).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16353 return fine_position_tile(params, d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16354 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16355 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16356
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16357 // remove tiles when splitting is done
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16358 cur_row_tiles.selectAll('.tile').each(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16359 if (Math.abs(d.value_up) > 0 && Math.abs(d.value_dn) > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16360 d3.select(this).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16361 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16362 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16363 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16364
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16365 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16366 /* 187 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16367 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16368
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16369 module.exports = function exit_components(params, delays, duration) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16370
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16371 var row_nodes = params.network_data.row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16372 var col_nodes = params.network_data.col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16373
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16374 // remove entire rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16375 var exiting_rows = d3.select(params.root + ' .clust_group').selectAll('.row').data(params.matrix.matrix, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16376 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16377 }).exit();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16378
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16379 if (delays.run_transition) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16380 exiting_rows.transition().duration(duration).style('opacity', 0).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16381 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16382 exiting_rows.style('opacity', 0).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16383 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16384
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16385 // remove row labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16386 d3.selectAll(params.root + ' .row_label_group').data(row_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16387 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16388 }).exit().transition().duration(duration).style('opacity', 0).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16389
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16390 // remove column labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16391 d3.selectAll(params.root + ' .col_label_group').data(col_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16392 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16393 }).exit().transition().duration(duration).style('opacity', 0).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16394
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16395 // remove row triangles and colorbars
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16396 d3.selectAll(params.root + ' .row_cat_group').data(row_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16397 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16398 }).exit().transition().duration(duration).style('opacity', 0).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16399
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16400 // remove row triangles and colorbars
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16401 d3.selectAll(params.root + ' .row_dendro_group').data(row_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16402 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16403 }).exit().transition().duration(duration).style('opacity', 0).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16404
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16405 d3.selectAll(params.root + ' .col_label_text').data(col_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16406 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16407 }).exit().transition().duration(duration).style('opacity', 0).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16408
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16409 d3.selectAll(params.root + ' .horz_lines').data(row_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16410 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16411 }).exit().transition().duration(duration).style('opacity', 0).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16412
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16413 d3.selectAll(params.root + ' .vert_lines').data(col_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16414 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16415 }).exit().transition().duration(duration).style('opacity', 0).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16416
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16417 // remove dendrogram
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16418 d3.selectAll(params.root + ' .col_cat_group').data(col_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16419 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16420 }).exit().transition().duration(duration).style('opacity', 0).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16421
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16422 d3.selectAll(params.root + ' .col_dendro_group').data(col_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16423 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16424 }).exit().transition().duration(duration).style('opacity', 0).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16425 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16426
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16427 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16428 /* 188 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16429 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16430
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16431 var enter_new_rows = __webpack_require__(189);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16432
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16433 module.exports = function enter_row_groups(params, delays, duration, tip) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16434
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16435 // enter new rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16436 var new_row_groups = d3.select(params.root + ' .clust_group').selectAll('.row').data(params.matrix.matrix, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16437 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16438 }).enter().append('g').classed('row', true).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16439 return 'translate(0,' + params.viz.y_scale(d.row_index) + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16440 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16441
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16442 new_row_groups.each(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16443 enter_new_rows(params, d, delays, duration, tip, this);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16444 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16445 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16446
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16447 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16448 /* 189 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16449 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16450
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16451 var enter_split_tiles = __webpack_require__(190);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16452 var mouseover_tile = __webpack_require__(45);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16453 var mouseout_tile = __webpack_require__(46);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16454 var fine_position_tile = __webpack_require__(47);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16455
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16456 // make each row in the clustergram
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16457 module.exports = function enter_new_rows(params, ini_inp_row_data, delays, duration, tip, row_selection) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16458
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16459 var inp_row_data = ini_inp_row_data.row_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16460
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16461 // remove zero values to make visualization faster
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16462 var row_data = _.filter(inp_row_data, function (num) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16463 return num.value !== 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16464 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16465
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16466 // update tiles
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16467 ////////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16468 var tile = d3.select(row_selection).selectAll('rect').data(row_data, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16469 return d.col_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16470 }).enter().append('rect').attr('class', 'tile row_tile').attr('width', params.viz.rect_width).attr('height', params.viz.rect_height)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16471 // switch the color based on up/dn value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16472 .style('fill', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16473 return d.value > params.matrix.mid_val ? params.matrix.tile_colors[0] : params.matrix.tile_colors[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16474 }).on('mouseover', function (...args) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16475 mouseover_tile(params, this, tip, args);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16476 }).on('mouseout', function mouseout() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16477 mouseout_tile(params, this, tip);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16478 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16479
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16480 tile.style('fill-opacity', 0).transition().delay(delays.enter).duration(duration).style('fill-opacity', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16481 // calculate output opacity using the opacity scale
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16482 var op_val = 0, output_opacity = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16483 op_val = params.matrix.mid_val + Math.abs(d.value - params.matrix.mid_val);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16484 output_opacity = params.matrix.opacity_scale(Math.abs(op_val));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16485 return output_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16486 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16487
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16488 tile.attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16489 return fine_position_tile(params, d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16490 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16491
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16492 if (params.matrix.tile_type == 'updn') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16493 enter_split_tiles(params, inp_row_data, row_selection, tip, delays, duration, tile);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16494 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16495 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16496
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16497 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16498 /* 190 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16499 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16500
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16501 var draw_up_tile = __webpack_require__(43);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16502 var draw_dn_tile = __webpack_require__(44);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16503 var fine_position_tile = __webpack_require__(47);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16504
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16505 module.exports = function enter_split_tiles(params, inp_row_data, row_selection, tip, delays, duration, tile) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16506
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16507 // value split
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16508 var row_split_data = _.filter(inp_row_data, function (num) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16509 return num.value_up != 0 \|\| num.value_dn != 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16510 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16511
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16512 // tile_up
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16513 var new_tiles_up = d3.select(row_selection).selectAll('.tile_up').data(row_split_data, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16514 return d.col_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16515 }).enter().append('path').attr('class', 'tile_up').attr('d', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16516 return draw_up_tile(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16517 }).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16518 return fine_position_tile(params, d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16519 }).style('fill', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16520 return params.matrix.tile_colors[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16521 }).on('mouseover', function (p) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16522 // highlight row - set text to active if
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16523 d3.selectAll(params.root + ' .row_label_group text').classed('active', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16524 return p.row_name === d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16525 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16526
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16527 d3.selectAll(params.root + ' .col_label_text text').classed('active', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16528 return p.col_name === d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16529 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16530 if (params.matrix.show_tile_tooltips) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16531 tip.show(p);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16532 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16533 }).on('mouseout', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16534 d3.selectAll(params.root + ' text').classed('active', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16535 if (params.matrix.show_tile_tooltips) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16536 tip.hide();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16537 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16538 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16539
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16540 new_tiles_up.style('fill-opacity', 0).transition().delay(delays.enter).duration(duration).style('fill-opacity', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16541 var inst_opacity = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16542 if (Math.abs(d.value_dn) > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16543 var op_val = params.matrix.mid_val + Math.abs(d.value_up - params.matrix.mid_val);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16544 inst_opacity = params.matrix.opacity_scale(op_val);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16545 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16546 return inst_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16547 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16548
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16549 // tile_dn
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16550 var new_tiles_dn = d3.select(row_selection).selectAll('.tile_dn').data(row_split_data, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16551 return d.col_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16552 }).enter().append('path').attr('class', 'tile_dn').attr('d', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16553 return draw_dn_tile(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16554 }).attr('transform', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16555 return fine_position_tile(params, d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16556 }).style('fill', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16557 return params.matrix.tile_colors[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16558 }).on('mouseover', function (p) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16559 // highlight row - set text to active if
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16560 d3.selectAll(params.root + ' .row_label_group text').classed('active', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16561 return p.row_name === d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16562 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16563
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16564 d3.selectAll(params.root + ' .col_label_text text').classed('active', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16565 return p.col_name === d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16566 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16567 if (params.matrix.show_tile_tooltips) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16568 tip.show(p);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16569 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16570 }).on('mouseout', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16571 d3.selectAll(params.root + ' text').classed('active', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16572 if (params.matrix.show_tile_tooltips) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16573 tip.hide();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16574 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16575 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16576
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16577 new_tiles_dn.style('fill-opacity', 0).transition().delay(delays.enter).duration(duration).style('fill-opacity', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16578 var inst_opacity = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16579 if (Math.abs(d.value_up) > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16580 var op_val = params.matrix.mid_val + Math.abs(d.value_dn - params.matrix.mid_val);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16581 inst_opacity = params.matrix.opacity_scale(op_val);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16582 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16583 return inst_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16584 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16585
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16586 // remove tiles when splitting is done
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16587 tile.each(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16588 if (Math.abs(d.value_up) > 0 && Math.abs(d.value_dn) > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16589 d3.select(this).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16590 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16591 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16592 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16593
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16594 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16595 /* 191 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16596 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16597
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16598 module.exports = function resize_containers(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16599
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16600 // reposition matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16601 d3.select(params.root + ' .clust_container').attr('transform', 'translate(' + params.viz.clust.margin.left + ',' + params.viz.clust.margin.top + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16602
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16603 // reposition col container
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16604 d3.select(params.root + ' .col_label_outer_container').attr('transform', 'translate(0,' + params.viz.norm_labels.width.col + ')');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16605
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16606 // reposition col_viz container
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16607 d3.select(params.root + ' .col_cat_outer_container').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16608 var inst_offset = params.viz.norm_labels.width.col + 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16609 return 'translate(0,' + inst_offset + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16610 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16611 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16612
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16613 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16614 /* 192 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16615 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16616
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16617 /* eslint-disable */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16618
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16619 var change_groups = __webpack_require__(163);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16620 var all_reorder = __webpack_require__(115);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16621 var ini_cat_reorder = __webpack_require__(114);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16622 var run_row_search = __webpack_require__(193);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16623
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16624 module.exports = function ini_sidebar(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16625
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16626 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16627
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16628 var input = d3.select(params.root + ' .gene_search_box')[0][0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16629 var awesomplete = new Awesomplete(input, { minChars: 1, maxItems: 15 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16630 var entities = cgm.params.network_data.row_nodes_names;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16631 awesomplete.list = entities;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16632
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16633 // position awesomplete list elements above other elements in the page
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16634 d3.selectAll('.awesomplete ul').style('z-index', 99);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16635
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16636 // submit genes button
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16637 $(params.root + ' .gene_search_box').keyup(function (e) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16638 if (e.keyCode === 13) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16639 var search_gene = $(params.root + ' .gene_search_box').val();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16640 run_row_search(cgm, search_gene, entities);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16641 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16642 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16643
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16644 $(params.root + ' .submit_gene_button').off().click(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16645 var search_gene = $(params.root + ' .gene_search_box').val();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16646 run_row_search(cgm, search_gene, entities);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16647 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16648
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16649 var reorder_types;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16650 if (params.sim_mat) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16651 reorder_types = ['both'];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16652 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16653 reorder_types = ['row', 'col'];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16654 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16655
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16656 _.each(reorder_types, function (inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16657
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16658 // reorder buttons
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16659 $(params.root + ' .toggle_' + inst_rc + '_order .btn').off().click(function (evt) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16660
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16661 var order_id = $(evt.target).attr('name').replace('_row', '').replace('_col', '');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16662
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16663 d3.selectAll(params.root + ' .toggle_' + inst_rc + '_order .btn').classed('active', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16664
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16665 d3.select(this).classed('active', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16666
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16667 if (inst_rc != 'both') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16668 all_reorder(cgm, order_id, inst_rc);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16669 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16670 all_reorder(cgm, order_id, 'row');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16671 all_reorder(cgm, order_id, 'col');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16672 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16673 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16674 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16675
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16676 ini_cat_reorder(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16677
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16678 // Opacity Slider
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16679 //////////////////////////////////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16680 if (d3.select(cgm.params.root + ' .opacity_slider').select('#handle-one').empty()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16681
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16682 var slider_fun = d3.slider().snap(true).value(1).min(0.1).max(1.9).step(0.1).on('slide', function (evt, value) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16683 run_on_opacity_slide(evt, value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16684 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16685
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16686 d3.select(cgm.params.root + ' .opacity_slider').call(slider_fun);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16687 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16688
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16689 function run_on_dendro_slide(evt, value, inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16690 $("#amount").val("$" + value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16691 var inst_index = value * 10;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16692 // var inst_rc;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16693
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16694 if (inst_rc != 'both') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16695 change_groups(cgm, inst_rc, inst_index);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16696 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16697 change_groups(cgm, 'row', inst_index);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16698 change_groups(cgm, 'col', inst_index);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16699 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16700 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16701
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16702 function run_on_opacity_slide(evt, value) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16703
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16704 var inst_index = 2 - value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16705 var scaled_max = cgm.params.matrix.abs_max_val * inst_index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16706
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16707 cgm.params.matrix.opacity_scale.domain([0, scaled_max]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16708
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16709 d3.selectAll(cgm.params.root + ' .tile').style('fill-opacity', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16710 // calculate output opacity using the opacity scale
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16711 var op_val = 0, output_opacity = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16712 op_val = cgm.params.matrix.mid_val + Math.abs(d.value - cgm.params.matrix.mid_val);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16713 var output_opacity = cgm.params.matrix.opacity_scale(op_val);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16714 return output_opacity;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16715 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16716 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16717 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16718
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16719 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16720 /* 193 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16721 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16722
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16723 var two_translate_zoom = __webpack_require__(116);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16724
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16725 module.exports = function run_row_search(cgm, search_term, entities) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16726
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16727 var prop = 'name';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16728
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16729 if (entities.indexOf(search_term) !== -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16730
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16731 // unhighlight
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16732 d3.selectAll(cgm.params.root + ' .row_label_group').select('rect').style('opacity', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16733
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16734 // calc pan_dy
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16735 var idx = _.indexOf(entities, search_term);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16736 var inst_y_pos = cgm.params.viz.y_scale(idx);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16737 var pan_dy = cgm.params.viz.clust.dim.height / 2 - inst_y_pos;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16738
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16739 var inst_zoom = cgm.params.viz.zoom_ratio.x;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16740
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16741 // working on improving zoom behavior
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16742 ///////////////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16743 ///////////////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16744
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16745 // // increase zoom
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16746 // inst_zoom = 3 * inst_zoom;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16747
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16748 // // move visualization down less
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16749 // pan_dy = pan_dy - 5;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16750
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16751 two_translate_zoom(cgm, 0, pan_dy, inst_zoom);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16752
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16753 // set y zoom to zoom_switch
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16754 cgm.params.zoom_info.zoom_y = inst_zoom;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16755
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16756 // highlight
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16757 d3.selectAll(cgm.params.root + ' .row_label_group').filter(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16758 return d[prop] === search_term;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16759 }).select('rect').style('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16760 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16761 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16762
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16763 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16764 /* 194 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16765 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16766
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16767 module.exports = function enable_sidebar(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16768
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16769 /* only enable dendrogram sliders if there has been no dendro_filtering */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16770
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16771 // only enable reordering if params.dendro_filter.row === false
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16772 if (params.dendro_filter.row === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16773
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16774 // orders are switched!
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16775 if (params.viz.inst_order.col === 'clust') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16776 d3.select(params.root + ' .row_slider_group').style('opacity', 1).style('pointer-events', 'all');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16777 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16778 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16779
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16780 d3.selectAll(params.root + ' .toggle_row_order .btn').attr('disabled', null);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16781
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16782 if (params.dendro_filter.col === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16783
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16784 // orders are switched!
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16785 if (params.viz.inst_order.row === 'clust') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16786 d3.select(params.root + ' .col_slider_group').style('opacity', 1).style('pointer-events', 'all');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16787 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16788 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16789
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16790 d3.selectAll(params.root + ' .toggle_col_order .btn').attr('disabled', null);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16791
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16792 d3.selectAll(params.root + ' .gene_search_button .btn').attr('disabled', null);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16793
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16794 params.viz.run_trans = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16795 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16796
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16797 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16798 /* 195 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16799 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16800
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16801 module.exports = function update_reorder_buttons(tmp_config, params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16802 _.each(['row', 'col'], function (inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16803
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16804 var other_rc;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16805 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16806 other_rc = 'col';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16807 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16808 other_rc = 'row';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16809 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16810
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16811 d3.selectAll(params.root + ' .toggle_' + other_rc + '_order .btn').filter(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16812 return d3.select(this).attr('name') === tmp_config.inst_order[inst_rc];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16813 }).classed('active', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16814 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16815 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16816
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16817 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16818 /* 196 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16819 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16820
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16821 var remove_node_cats = __webpack_require__(197);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16822 var utils = __webpack_require__(2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16823
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16824 module.exports = function modify_row_node_cats(cat_data, inst_nodes, strip_names = false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16825
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16826 // console.log('MODIFY ROW NODE CATS')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16827 // console.log('CAT_DATA')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16828 // console.log(cat_data)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16829
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16830 var cat_type_num = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16831 var inst_index = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16832 var inst_cat_title;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16833 var inst_cats;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16834 var inst_members;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16835 var inst_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16836 var inst_category;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16837 var inst_cat_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16838 var inst_full_cat;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16839 var inst_cat_num;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16840
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16841 // loop through row nodes
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16842 //////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16843 _.each(inst_nodes, function (inst_node) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16844
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16845 inst_name = inst_node.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16846
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16847 // not sure if this is needed
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16848 // inst_name = inst_name.toUpperCase();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16849
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16850 if (strip_names === true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16851 // only consider first part of inst_name
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16852 ////////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16853 // may improve this
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16854 if (inst_name.indexOf(' ')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16855 inst_name = inst_name.split(' ')[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16856 } else if (inst_name.indexOf('_')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16857 inst_name = inst_name.split('_')[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16858 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16859 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16860
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16861 cat_type_num = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16862
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16863 remove_node_cats(inst_node);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16864
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16865 // loop through each category type
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16866 _.each(cat_data, function (inst_cat_data) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16867
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16868 inst_cat_title = inst_cat_data.cat_title;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16869 inst_cats = inst_cat_data.cats;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16870
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16871 // initialize with no category
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16872 inst_category = 'false';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16873 inst_index = -1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16874
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16875 inst_cat_num = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16876
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16877 // loop through each category in the category-type
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16878 _.each(inst_cats, function (inst_cat) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16879
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16880 inst_cat_name = inst_cat.cat_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16881 inst_members = inst_cat.members;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16882
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16883 // add category if node is a member
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16884 if (_.contains(inst_members, inst_name)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16885
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16886 inst_category = inst_cat_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16887 inst_index = inst_cat_num;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16888 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16889
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16890 inst_cat_num = inst_cat_num + 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16891 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16892
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16893 if (utils.has(inst_cat_data, 'pval')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16894
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16895 var inst_pval = inst_cat_data.pval.toExponential();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16896 inst_full_cat = inst_cat_title + ': ' + inst_category + '<p> Pval ' + String(inst_pval) + '</p>';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16897 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16898
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16899 if (inst_cat_title.indexOf('cat-') === -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16900 inst_full_cat = inst_cat_title + ': ' + inst_category;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16901 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16902 inst_full_cat = inst_category;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16903 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16904 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16905
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16906 inst_node['cat-' + String(cat_type_num)] = inst_full_cat;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16907 inst_node['cat_' + String(cat_type_num) + '_index'] = inst_index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16908
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16909 cat_type_num = cat_type_num + 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16910 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16911 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16912 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16913
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16914 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16915 /* 197 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16916 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16917
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16918 module.exports = function remove_node_cats(inst_node) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16919
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16920 var all_props = _.keys(inst_node);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16921
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16922 _.each(all_props, function (inst_prop) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16923
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16924 if (inst_prop.indexOf('cat-') > -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16925 delete inst_node[inst_prop];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16926 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16927
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16928 if (inst_prop.indexOf('cat_') > -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16929 delete inst_node[inst_prop];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16930 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16931 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16932 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16933
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16934 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16935 /* 198 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16936 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16937
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16938 var reset_size_after_update = __webpack_require__(182);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16939 var make_col_label_container = __webpack_require__(103);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16940 var show_visible_area = __webpack_require__(106);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16941 var resize_containers = __webpack_require__(191);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16942
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16943 module.exports = function ds_enter_exit_update(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16944
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16945 // console.log('======== ds_enter_exit_update ===============');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16946
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16947 // remove row labels, remove non-downsampled rows, and add downsampled rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16948 d3.selectAll(cgm.params.root + ' .row_cat_group').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16949 d3.selectAll(cgm.params.root + ' .row_label_group').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16950 d3.selectAll(cgm.params.root + ' .row').remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16951
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16952 // no need to re-calculate the downsampled layers
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16953 // calc_downsampled_levels(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16954 var zooming_stopped = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16955 var zooming_out = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16956 var make_all_rows = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16957
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16958 // show_visible_area is also run with two_translate_zoom, but at that point
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16959 // the parameters were not updated and two_translate_zoom if only run
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16960 // if needed to reset zoom
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16961 show_visible_area(cgm, zooming_stopped, zooming_out, make_all_rows);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16962
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16963 make_col_label_container(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16964
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16965 var col_nodes = cgm.params.network_data.col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16966
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16967 // remove column labels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16968 d3.selectAll(cgm.params.root + ' .col_label_group').data(col_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16969 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16970 }).exit().style('opacity', 0).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16971
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16972 d3.selectAll(cgm.params.root + ' .col_label_text').data(col_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16973 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16974 }).exit().style('opacity', 0).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16975
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16976 d3.selectAll(cgm.params.root + ' .col_cat_group').data(col_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16977 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16978 }).exit().style('opacity', 0).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16979
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16980 d3.selectAll(cgm.params.root + ' .col_dendro_group').data(col_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16981 return d.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16982 }).exit().style('opacity', 0).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16983
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16984 // necessary for repositioning clust, col and col-cat containers
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16985 resize_containers(cgm.params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16986
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16987 // seeing if this fixes resizing issue
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16988 var delays = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16989 delays.enter = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16990 delays.update = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16991 delays.run_transition = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16992 var duration = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16993 reset_size_after_update(cgm, duration, delays);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16994 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16995
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16996 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16997 /* 199 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16998 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	16999
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17000 var sim_click = __webpack_require__(171);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17001
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17002 module.exports = function quick_cluster() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17003 /* eslint-disable */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17004
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17005 function run(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17006
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17007 var x_trans = Number(d3.select(params.root + ' .expand_button').attr('x').replace('px', ''));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17008 var y_trans = Number(d3.select(params.root + ' .expand_button').attr('y').replace('px', ''));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17009
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17010 var wait_click = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17011 var wait_real_click = 400;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17012 setTimeout(sim_click, wait_click, params, 'single', x_trans, y_trans);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17013 setTimeout(click_menu_button, wait_real_click, params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17014
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17015 setTimeout(reset_cluster_order, 1500, params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17016 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17017
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17018 function get_duration() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17019 return 3500;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17020 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17021
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17022 function click_menu_button(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17023 $(params.root + ' .expand_button').d3Click();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17024 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17025
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17026 function reset_cluster_order(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17027 click_reorder_button(params, 'row', 'clust');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17028 click_reorder_button(params, 'col', 'clust');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17029 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17030
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17031 function click_reorder_button(params, inst_rc, inst_order) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17032 var inst_button = d3.selectAll('.toggle_' + inst_rc + '_order .btn').filter(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17033 return this.__data__ == inst_order;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17034 })[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17035
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17036 $(inst_button).click();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17037 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17038
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17039 // allows doubleclicking on d3 element
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17040 jQuery.fn.d3Click = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17041 this.each(function (i, e) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17042 var evt = document.createEvent("MouseEvents");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17043 evt.initMouseEvent("click", true, true, window, 0, 0, 0, 0, 0, false, false, false, false, 0, null);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17044 e.dispatchEvent(evt);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17045 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17046 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17047
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17048 return {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17049 run: run,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17050 get_duration: get_duration
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17051 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17052 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17053
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17054 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17055 /* 200 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17056 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17057
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17058 var demo_text = __webpack_require__(168);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17059 var highlight_sidebar_element = __webpack_require__(174);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17060 var change_groups = __webpack_require__(163);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17061
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17062 module.exports = function play_groups() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17063 /* eslint-disable */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17064
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17065 function run(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17066
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17067 var text = 'Identify row and column groups\nof varying sizes using ' + ' the\nsliders and dendrogram';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17068 demo_text(params, text, 10000);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17069
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17070 setTimeout(highlight_sidebar_element, 3000, params, 'slider_col', 7000);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17071
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17072 setTimeout(change_group_slider, 4000, params, 'row', 3);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17073 setTimeout(change_group_slider, 5000, params, 'row', 4);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17074 setTimeout(change_group_slider, 6000, params, 'row', 5);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17075 setTimeout(change_group_slider, 7000, params, 'row', 6);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17076 setTimeout(change_group_slider, 8000, params, 'row', 7);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17077 setTimeout(change_group_slider, 9000, params, 'row', 5);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17078 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17079
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17080 function get_duration() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17081 return 11000;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17082 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17083
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17084 function change_group_slider(params, inst_rc, inst_value) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17085 $(cgm.params.root + ' .slider_col').slider("value", inst_value / 10);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17086 change_groups(cgm, inst_rc, inst_value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17087 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17088
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17089 return {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17090 run: run,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17091 get_duration: get_duration
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17092 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17093 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17094
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17095 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17096 /* 201 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17097 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17098
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17099 var demo_text = __webpack_require__(168);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17100 var sim_click = __webpack_require__(171);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17101
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17102 module.exports = function play_category() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17103 /* eslint-disable */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17104
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17105 function run(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17106
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17107 var text = 'Row and column categories\ncan be use to reorder\nby double-clicking';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17108 demo_text(params, text, 7000);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17109
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17110 var inst_element = d3.selectAll(params.root + ' .col_cat_super').filter(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17111 return this.__data__ === 'cat-1';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17112 })[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17113
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17114 var tmp_pos = d3.select('.col_cat_super').attr('transform');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17115 var x_trans = Number(tmp_pos.split('(')[1].split(',')[0].replace(')', '')) + 20;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17116 var y_trans = Number(tmp_pos.split(',')[1].replace(')', ''));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17117
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17118 var wait_click = 4000;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17119 setTimeout(sim_click, wait_click, params, 'double', x_trans, y_trans);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17120
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17121 var wait_reorder = wait_click + 300;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17122 setTimeout(fire_double_click_row, wait_reorder, params, inst_element);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17123 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17124
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17125 function get_duration() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17126 return 8000;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17127 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17128
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17129 function fire_double_click_row(params, inst_element) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17130 $(inst_element).d3DblClick();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17131 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17132
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17133 // allows doubleclicking on d3 element
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17134 jQuery.fn.d3DblClick = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17135 this.each(function (i, e) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17136 var evt = document.createEvent("MouseEvents");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17137 evt.initMouseEvent("dblclick", true, true, window, 0, 0, 0, 0, 0, false, false, false, false, 0, null);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17138 e.dispatchEvent(evt);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17139 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17140 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17141 return {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17142 run: run,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17143 get_duration: get_duration
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17144 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17145 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17146
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17147 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17148 /* 202 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17149 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17150
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17151 var demo_text = __webpack_require__(168);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17152 var toggle_play_button = __webpack_require__(203);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17153
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17154 module.exports = function play_conclusion() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17155
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17156 function run(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17157 var text_1 = "Clustergrammer is built with gene\nexpression data in mind" + " and interfaces\nwith several Ma'ayan lab web tools";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17158 var text_2 = "The example data being visualized is\ngene expression data" + " obtained from the\nCancer Cell Line Encyclopedia";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17159 var text_3 = "For more information please view\nthe help documentation";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17160
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17161 setTimeout(demo_text, 0, params, text_1, 4500);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17162 setTimeout(demo_text, 4500, params, text_2, 4500);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17163 setTimeout(demo_text, 9000, params, text_3, 4500);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17164
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17165 setTimeout(reset_demo, 14000, params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17166 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17167
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17168 function reset_demo(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17169
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17170 // prevent more than one demo from running at once
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17171 d3.select(params.root + ' .play_button').classed('running_demo', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17172
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17173 toggle_play_button(params, true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17174 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17175
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17176 function get_duration() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17177 return 12000;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17178 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17179
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17180 return {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17181 run: run,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17182 get_duration: get_duration
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17183 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17184 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17185
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17186 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17187 /* 203 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17188 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17189
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17190 module.exports = function toggle_play_button(params, show) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17191
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17192 if (show === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17193 d3.select(params.root + ' .play_button').transition().duration(500).style('opacity', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17194 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17195 d3.select(params.root + ' .play_button').transition().duration(500).style('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17196
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17197 $.unblockUI();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17198 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17199 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17200
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17201 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17202 /* 204 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17203 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17204
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17205 var demo_text = __webpack_require__(168);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17206 var sim_click = __webpack_require__(171);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17207
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17208 module.exports = function play_menu_button() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17209 /* eslint-disable */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17210
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17211 function run(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17212
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17213 var text = 'View additional controls\nby clicking the menu button';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17214 demo_text(params, text, 4000);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17215
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17216 // var inst_element = get_row_element(params, 'EGFR');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17217
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17218 // var group_trans = d3.select(inst_element).attr('transform');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17219
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17220 // var container_trans = d3.select(params.root+' .clust_container')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17221 // .attr('transform')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17222 // .split(',')[1].replace(')','');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17223
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17224 // var x_trans = params.viz.norm_labels.width.row * 0.9;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17225
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17226 // var row_trans = group_trans.split(',')[1].replace(')','');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17227 // var y_trans = String(Number(row_trans) + Number(container_trans) +
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17228 // params.viz.rect_height/2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17229
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17230 var x_trans = Number(d3.select(params.root + ' .expand_button').attr('x').replace('px', ''));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17231 var y_trans = Number(d3.select(params.root + ' .expand_button').attr('y').replace('px', ''));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17232
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17233 var wait_click = 3000;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17234 var wait_real_click = 3400;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17235 setTimeout(sim_click, wait_click, params, 'single', x_trans, y_trans);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17236 setTimeout(click_menu_button, wait_real_click, params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17237 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17238
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17239 function get_duration() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17240 return 5000;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17241 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17242
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17243 function click_menu_button(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17244 $(params.root + ' .expand_button').d3Click();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17245 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17246
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17247 function get_row_element(params, inst_row) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17248
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17249 var inst_element = d3.selectAll(params.root + ' .row_label_group').filter(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17250 var inst_data = this.__data__;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17251 return inst_data.name == inst_row;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17252 })[0][0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17253
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17254 return inst_element;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17255 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17256
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17257 // allows doubleclicking on d3 element
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17258 jQuery.fn.d3Click = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17259 this.each(function (i, e) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17260 var evt = document.createEvent("MouseEvents");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17261 evt.initMouseEvent("click", true, true, window, 0, 0, 0, 0, 0, false, false, false, false, 0, null);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17262 e.dispatchEvent(evt);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17263 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17264 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17265
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17266 // allows doubleclicking on d3 element
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17267 jQuery.fn.d3DblClick = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17268 this.each(function (i, e) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17269 var evt = document.createEvent("MouseEvents");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17270 evt.initMouseEvent("dblclick", true, true, window, 0, 0, 0, 0, 0, false, false, false, false, 0, null);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17271 e.dispatchEvent(evt);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17272 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17273 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17274 return {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17275 run: run,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17276 get_duration: get_duration
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17277 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17278 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17279
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17280 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17281 /* 205 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17282 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17283
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17284 var make_play_button = __webpack_require__(206);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17285 var make_demo_text_containers = __webpack_require__(207);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17286
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17287 module.exports = function ini_demo() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17288
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17289 var cgm = this;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17290 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17291
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17292 make_play_button(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17293
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17294 var demo_text_size = 30;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17295 make_demo_text_containers(params, demo_text_size);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17296 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17297
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17298 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17299 /* 206 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17300 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17301
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17302 var position_play_button = __webpack_require__(149);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17303
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17304 module.exports = function make_play_button(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17305
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17306 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17307
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17308 if (d3.select(params.root + ' .play_button').empty()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17309
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17310 var play_button = d3.select(params.root + ' .viz_svg').append('g').classed('play_button', true).classed('running_demo', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17311
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17312 position_play_button(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17313
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17314 play_button.append('circle').style('r', 45).style('fill', 'white').style('stroke', 'black').style('stroke-width', '3px').style('opacity', 0.5);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17315
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17316 play_button.append('path').attr('d', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17317
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17318 var tri_w = 40;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17319 var tri_h = 22;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17320 var tri_offset = 15;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17321
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17322 return 'M-' + tri_offset + ',-' + tri_h + ' l ' + tri_w + ',' + tri_h + ' l -' + tri_w + ',' + tri_h + ' z ';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17323 }).style('fill', 'black').style('opacity', 0.5);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17324
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17325 // mouseover behavior
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17326 play_button.on('mouseover', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17327 d3.select(this).select('path').style('fill', 'red').style('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17328
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17329 d3.select(this).select('circle').style('opacity', 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17330 }).on('mouseout', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17331 d3.select(this).select('path').style('fill', 'black').style('opacity', 0.5);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17332 d3.select(this).select('circle').style('opacity', 0.5);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17333 }).on('click', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17334 // running from anonymous function to keep this defined correctly
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17335 cgm.play_demo();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17336 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17337 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17338 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17339
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17340 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17341 /* 207 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17342 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17343
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17344 module.exports = function make_demo_text_containers(params, demo_text_size) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17345
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17346 if (d3.select(params.root + ' .demo_group').empty()) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17347
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17348 var clust_transform = d3.select(params.root + ' .clust_container').attr('transform');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17349 var clust_x = Number(clust_transform.split('(')[1].split(',')[0]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17350 var clust_y = Number(clust_transform.split(',')[1].replace(')', ''));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17351
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17352 // demo text container
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17353 var demo_group = d3.select(params.root + ' .viz_svg').append('g').classed('demo_group', true).attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17354 var pos_x = clust_x + 20;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17355 var pos_y = clust_y + 40;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17356 return 'translate(' + pos_x + ',' + pos_y + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17357 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17358
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17359 demo_group.append('rect').classed('rect_1', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17360
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17361 demo_group.append('rect').classed('rect_2', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17362
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17363 demo_group.append('rect').classed('rect_3', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17364
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17365 var shift_height = 1.3 * demo_text_size;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17366
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17367 demo_group.append('text').attr('id', 'text_1').attr('font-size', demo_text_size + 'px').attr('font-weight', 1000).attr('font-family', '"Helvetica Neue", Helvetica, Arial, sans-serif');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17368
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17369 demo_group.append('text').attr('id', 'text_2').attr('font-size', demo_text_size + 'px').attr('font-weight', 1000).attr('font-family', '"Helvetica Neue", Helvetica, Arial, sans-serif').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17370 return 'translate(0,' + String(shift_height) + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17371 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17372
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17373 demo_group.append('text').attr('id', 'text_3').attr('font-size', demo_text_size + 'px').attr('font-weight', 1000).attr('font-family', '"Helvetica Neue", Helvetica, Arial, sans-serif').attr('transform', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17374 return 'translate(0,' + String(2 * shift_height) + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17375 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17376 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17377 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17378
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17379 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17380 /* 208 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17381 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17382
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17383 var filter_network_using_new_nodes = __webpack_require__(11);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17384 var update_viz_with_network = __webpack_require__(179);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17385
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17386 module.exports = function filter_viz_using_nodes(new_nodes) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17387
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17388 var new_network_data = filter_network_using_new_nodes(this.config, new_nodes);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17389 update_viz_with_network(this, new_network_data);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17390 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17391
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17392 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17393 /* 209 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17394 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17395
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17396 var filter_network_using_new_nodes = __webpack_require__(11);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17397 var update_viz_with_network = __webpack_require__(179);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17398
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17399 module.exports = function filter_viz_using_names(names, external_cgm = false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17400
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17401 // names is an object with row and column names that will be used to filter
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17402 // the matrix
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17403
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17404 var cgm;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17405 if (external_cgm === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17406 cgm = this;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17407 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17408 cgm = external_cgm;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17409 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17410
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17411 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17412 var new_nodes = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17413 var found_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17414
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17415 _.each(['row', 'col'], function (inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17416
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17417 var orig_nodes = params.inst_nodes[inst_rc + '_nodes'];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17418
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17419 if (_.has(names, inst_rc)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17420
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17421 if (names[inst_rc].length > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17422 var inst_names = names[inst_rc];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17423 found_nodes = $.grep(orig_nodes, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17424 return $.inArray(d.name, inst_names) > -1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17425 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17426 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17427
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17428 found_nodes = orig_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17429 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17430 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17431
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17432 found_nodes = orig_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17433 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17434
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17435 new_nodes[inst_rc + '_nodes'] = found_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17436 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17437
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17438 // keep backup of the nodes for resetting filtering
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17439 var inst_row_nodes = cgm.params.network_data.row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17440 var inst_col_nodes = cgm.params.network_data.col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17441
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17442 var new_network_data = filter_network_using_new_nodes(cgm.config, new_nodes);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17443
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17444 // takes entire cgm object
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17445 // last argument tells it to not preserve categoty colors
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17446 update_viz_with_network(cgm, new_network_data);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17447
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17448 // only keep backup if previous number of nodes were larger than current number
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17449 // of nodes
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17450 if (inst_row_nodes.length > cgm.params.inst_nodes.row_nodes.length) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17451 cgm.params.inst_nodes.row_nodes = inst_row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17452 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17453
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17454 if (inst_col_nodes.length > cgm.params.inst_nodes.col_nodes.length) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17455 cgm.params.inst_nodes.col_nodes = inst_col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17456 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17457 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17458
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17459 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17460 /* 210 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17461 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17462
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17463 var make_row_cat = __webpack_require__(158);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17464 var calc_viz_params = __webpack_require__(15);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17465 var resize_viz = __webpack_require__(124);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17466 var modify_row_node_cats = __webpack_require__(196);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17467
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17468 module.exports = function update_cats(cgm, cat_data) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17469
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17470 // Only accessible from the cgm API, cat_data is provided by externally
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17471 ///////////////////////////////////////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17472
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17473 if (cgm.params.cat_update_callback != null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17474 cgm.params.cat_update_callback(this);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17475 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17476
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17477 // do not change column category info
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17478 var col_cat_colors = cgm.params.viz.cat_colors.col;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17479
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17480 modify_row_node_cats(cat_data, cgm.params.network_data.row_nodes, true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17481 // modify the current inst copy of nodes
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17482 modify_row_node_cats(cat_data, cgm.params.inst_nodes.row_nodes, true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17483
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17484 // recalculate the visualization parameters using the updated network_data
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17485 cgm.params = calc_viz_params(cgm.params, false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17486
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17487 make_row_cat(cgm, true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17488 resize_viz(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17489
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17490 cgm.params.new_row_cats = cat_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17491
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17492 cgm.params.viz.cat_colors.col = col_cat_colors;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17493 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17494
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17495 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17496 /* 211 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17497 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17498
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17499 var make_row_cat = __webpack_require__(158);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17500 var calc_viz_params = __webpack_require__(15);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17501 var resize_viz = __webpack_require__(124);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17502 var modify_row_node_cats = __webpack_require__(196);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17503 var generate_cat_data = __webpack_require__(212);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17504
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17505 module.exports = function reset_cats(run_resize_viz = true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17506
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17507 // console.log('RESET CATS')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17508
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17509 var cgm = this;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17510
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17511 var cat_data = generate_cat_data(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17512
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17513 // do not change column category info
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17514 var col_cat_colors = cgm.params.viz.cat_colors.col;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17515
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17516 modify_row_node_cats(cat_data, cgm.params.network_data.row_nodes);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17517 // modify the current inst copy of nodes
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17518 modify_row_node_cats(cat_data, cgm.params.inst_nodes.row_nodes);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17519
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17520 cgm.params.new_row_cats = cat_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17521 cgm.params.viz.cat_colors.col = col_cat_colors;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17522
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17523 if (run_resize_viz) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17524
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17525 // resize visualizatino
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17526 ////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17527 // recalculate the visualization parameters using the updated network_data
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17528 var predefine_cat_colors = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17529 cgm.params = calc_viz_params(cgm.params, predefine_cat_colors);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17530
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17531 make_row_cat(cgm, true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17532 resize_viz(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17533 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17534 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17535
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17536 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17537 /* 212 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17538 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17539
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17540 module.exports = function generate_cat_data(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17541
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17542 // only row category resetting is supported currently
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17543
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17544 // get row_nodes from config, since this is has the original network
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17545 var row_nodes = cgm.config.network_data.row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17546 var title_sep = ': ';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17547
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17548 // contains all the category information stored as an array of
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17549 // cat_type
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17550 var cat_data = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17551 var cat_type;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17552 var cat_info;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17553 var found_cat_title;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17554 var found_cat_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17555 var cat_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17556
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17557 // console.log('generate_cat_data')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17558 // console.log(cgm.params.viz.cat_names.row)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17559
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17560 // get current list of cateories
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17561 var check_node = row_nodes[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17562 var node_keys = _.keys(check_node);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17563 var current_cats = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17564 var tmp_cat;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17565 var tmp_title;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17566 var cat_index;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17567 _.each(node_keys, function (inst_prop) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17568
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17569 if (inst_prop.indexOf('cat-') >= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17570
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17571 // generate titles from cat info
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17572 tmp_cat = check_node[inst_prop];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17573
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17574 cat_index = parseInt(inst_prop.split('cat-')[1], 10);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17575
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17576 // use given title
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17577 if (tmp_cat.indexOf(title_sep) >= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17578 tmp_title = tmp_cat.split(title_sep)[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17579 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17580 tmp_title = inst_prop;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17581 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17582
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17583 // current_cats.push(tmp_title);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17584
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17585 current_cats[cat_index] = tmp_title;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17586 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17587 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17588
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17589 // console.log('current_cats')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17590 // console.log(current_cats)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17591
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17592 // initialize cat_data with categories in the correct order
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17593 var all_index = _.keys(current_cats).sort();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17594
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17595 var inst_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17596 _.each(all_index, function (inst_index) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17597
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17598 inst_data = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17599 inst_data.cat_title = current_cats[inst_index];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17600 inst_data.cats = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17601
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17602 cat_data.push(inst_data);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17603 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17604
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17605 // // initialize cat_data (keep original order)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17606 // var found_title;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17607 // _.each(cgm.params.viz.cat_names.row, function(inst_title){
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17608
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17609 // found_title = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17610
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17611 // console.log('inst_title -> ' + String(inst_title))
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17612
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17613 // if (current_cats.indexOf(inst_title) >= 0){
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17614 // found_title = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17615 // }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17616
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17617 // // only track cats that are found in the incoming nodes
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17618 // if (found_title){
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17619 // var inst_data = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17620 // inst_data.cat_title = inst_title;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17621 // inst_data.cats = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17622 // cat_data.push(inst_data);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17623 // }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17624
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17625 // });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17626
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17627 // console.log('cat_data after cross checking with current cats')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17628 // console.log(cat_data)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17629 // console.log('-------------------------\n')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17630
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17631 _.each(row_nodes, function (inst_node) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17632
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17633 var all_props = _.keys(inst_node);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17634
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17635 _.each(all_props, function (inst_prop) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17636
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17637 if (inst_prop.indexOf('cat-') > -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17638
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17639 cat_name = inst_node[inst_prop];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17640
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17641 cat_index = parseInt(inst_prop.split('cat-')[1], 10);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17642
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17643 // default title and name
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17644 var cat_title = inst_prop;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17645 cat_name = inst_node[inst_prop];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17646 var cat_string = inst_node[inst_prop];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17647 var cat_row_name = inst_node.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17648
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17649 // console.log('cat_string: '+String(cat_string))
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17650 // found actual title
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17651 if (cat_string.indexOf(title_sep) > -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17652 cat_title = cat_string.split(title_sep)[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17653 cat_name = cat_string.split(title_sep)[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17654 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17655 // cat_title = 'Category-'+String(parseInt(inst_prop.split('-')[1]) + 1)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17656 cat_title = inst_prop;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17657 cat_name = cat_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17658 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17659
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17660 // console.log('cat_index -> ' + String(cat_index))
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17661 // console.log('cat_name '+cat_name)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17662 // console.log('cat_title ' + cat_title)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17663 // console.log('--------')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17664
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17665 // cat_data is empty
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17666 if (cat_data.length === 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17667
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17668 add_new_cat_type(cat_title, cat_name, cat_row_name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17669
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17670 // cat_data is not empty
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17671 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17672
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17673 // look for cat_title in cat_data
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17674 found_cat_title = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17675 _.each(cat_data, function (inst_cat_type) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17676
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17677 // console.log('inst_cat_data title ' + inst_cat_type.cat_title)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17678
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17679 // check each cat_type object for a matching title
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17680 if (cat_title === inst_cat_type.cat_title) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17681 found_cat_title = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17682
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17683 // check if cat_name is in cats
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17684 found_cat_name = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17685 _.each(inst_cat_type.cats, function (inst_cat_obj) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17686
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17687 // found category name, add cat_row_name to members
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17688 if (cat_name === inst_cat_obj.cat_name) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17689 found_cat_name = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17690
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17691 // add cat_row_name to members
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17692 inst_cat_obj.members.push(cat_row_name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17693 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17694 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17695
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17696 // did not find cat name in cat_type - add cat_info for new
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17697 // category
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17698 if (found_cat_name === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17699 cat_info = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17700 cat_info.cat_name = cat_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17701 cat_info.members = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17702 cat_info.members.push(cat_row_name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17703 inst_cat_type.cats.push(cat_info);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17704 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17705 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17706 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17707
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17708 // did not find category type, initialize category type object
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17709 if (found_cat_title === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17710
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17711 // console.log('did not find cat_title: ' + String(cat_title))
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17712 // add_new_cat_type(cat_title, cat_name, cat_row_name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17713
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17714 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17715 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17716 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17717 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17718 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17719
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17720 function add_new_cat_type(cat_title, cat_name, cat_row_name) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17721
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17722 // initialize cat_type object to push to cat_data
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17723 cat_type = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17724 cat_type.cat_title = cat_title;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17725 cat_type.cats = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17726
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17727 // initialize cat_info (e.g. 'true' category has members [...])
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17728 cat_info = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17729 cat_info.cat_name = cat_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17730 cat_info.members = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17731 cat_info.members.push(cat_row_name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17732
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17733 cat_type.cats.push(cat_info);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17734
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17735 cat_data.push(cat_type);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17736 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17737
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17738 // console.log('RETURNING CAT DATA')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17739 // console.log(cat_data)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17740
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17741 return cat_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17742 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17743
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17744 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17745 /* 213 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17746 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17747
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17748 var update_viz_with_view = __webpack_require__(177);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17749 var reset_other_filter_sliders = __webpack_require__(214);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17750
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17751 module.exports = function external_update_view(filter_type, inst_state) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17752
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17753 // add something to control slider position
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17754 /////////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17755
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17756 var cgm = this;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17757
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17758 var requested_view = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17759 requested_view[filter_type] = inst_state;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17760 update_viz_with_view(this, requested_view);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17761
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17762 reset_other_filter_sliders(cgm, filter_type, inst_state);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17763 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17764
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17765 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17766 /* 214 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17767 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17768
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17769 var make_filter_title = __webpack_require__(215);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17770
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17771 module.exports = function reset_other_filter_sliders(cgm, filter_type, inst_state) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17772
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17773 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17774 var inst_rc;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17775 var reset_rc;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17776
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17777 d3.select(params.root + ' .slider_' + filter_type).attr('current_state', inst_state);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17778
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17779 _.each(_.keys(params.viz.possible_filters), function (reset_filter) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17780
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17781 if (filter_type.indexOf('row') > -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17782 inst_rc = 'row';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17783 } else if (filter_type.indexOf('col') > -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17784 inst_rc = 'col';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17785 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17786 inst_rc = 'neither';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17787 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17788
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17789 if (reset_filter.indexOf('row') > -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17790 reset_rc = 'row';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17791 } else if (reset_filter.indexOf('col') > -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17792 reset_rc = 'col';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17793 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17794 reset_rc = 'neither';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17795 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17796
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17797 if (filter_type != reset_filter && inst_rc != 'neither') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17798
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17799 if (inst_rc == reset_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17800
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17801 var tmp_title = make_filter_title(params, reset_filter);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17802
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17803 cgm.slider_functions[reset_filter].value(0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17804
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17805 d3.select(params.root + ' .title_' + reset_filter).text(tmp_title.text + tmp_title.state);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17806
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17807 d3.select(params.root + ' .slider_' + reset_filter).attr('current_state', tmp_title.state);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17808 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17809 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17810 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17811
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17812 var filter_title = make_filter_title(params, filter_type);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17813
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17814 d3.select(params.root + ' .title_' + filter_type).text(filter_title.text + inst_state + filter_title.suffix);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17815 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17816
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17817 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17818 /* 215 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17819 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17820
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17821 var get_filter_default_state = __webpack_require__(5);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17822
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17823 module.exports = function make_filter_title(params, filter_type) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17824
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17825 var filter_title = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17826 var title = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17827 var type = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17828
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17829 filter_title.state = get_filter_default_state(params.viz.filter_data, filter_type);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17830
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17831 type.top = filter_type.split('_')[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17832 type.node = filter_type.split('_')[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17833 type.measure = filter_type.split('_')[2];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17834
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17835 if (type.node === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17836 title.node = 'rows';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17837 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17838 title.node = 'columns';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17839 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17840
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17841 if (type.top === 'N') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17842 // filter_title.suffix = ' '+title.node;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17843 filter_title.suffix = '';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17844 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17845
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17846 if (type.top === 'pct') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17847 filter_title.suffix = '%';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17848 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17849
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17850 if (type.measure == 'sum') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17851 title.measure = 'sum';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17852 } else if (type.measure == 'var') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17853 title.measure = 'variance';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17854 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17855
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17856 if (type.measure === 'sum') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17857 filter_title.text = 'Top ' + title.node + ' ' + title.measure + ': ';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17858 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17859
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17860 if (type.measure === 'var') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17861 filter_title.text = 'Top ' + title.node + ' ' + title.measure + ': ';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17862 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17863
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17864 // Enrichr specific rules
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17865 if (_.keys(params.viz.possible_filters).indexOf('enr_score_type') > -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17866 if (type.node === 'col') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17867 filter_title.text = 'Top Enriched Terms: ';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17868 filter_title.suffix = '';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17869 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17870 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17871
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17872 return filter_title;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17873 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17874
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17875 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17876 /* 216 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17877 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17878
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17879 var file_saver = __webpack_require__(217);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17880 var make_matrix_string = __webpack_require__(218);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17881
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17882 module.exports = function save_matrix() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17883
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17884 var saveAs = file_saver();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17885
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17886 var params = this.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17887
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17888 var matrix_string = make_matrix_string(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17889
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17890 var blob = new Blob([matrix_string], { type: 'text/plain;charset=utf-8' });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17891 saveAs(blob, 'clustergrammer.txt');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17892 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17893
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17894 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17895 /* 217 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17896 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17897
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17898 module.exports = function file_saver() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17899 /* eslint-disable */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17900 /* FileSaver.js
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17901 * A saveAs() FileSaver implementation.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17902 * 2013-01-23
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17903 *
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17904 * By Eli Grey, http://eligrey.com
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17905 * License: X11/MIT
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17906 * See LICENSE.md
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17907 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17908
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17909 /global self /
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17910 /*jslint bitwise: true, regexp: true, confusion: true, es5: true, vars: true, white: true,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17911 plusplus: true */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17912
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17913 /! @source http://purl.eligrey.com/github/FileSaver.js/blob/master/FileSaver.js /
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17914
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17915 var saveAs = saveAs \|\| navigator.msSaveBlob && navigator.msSaveBlob.bind(navigator) \|\| function (view) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17916 "use strict";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17917
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17918 var doc = view.document
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17919 // only get URL when necessary in case BlobBuilder.js hasn't overridden it yet
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17920 ,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17921 get_URL = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17922 return view.URL \|\| view.webkitURL \|\| view;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17923 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17924 URL = view.URL \|\| view.webkitURL \|\| view,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17925 save_link = doc.createElementNS("http://www.w3.org/1999/xhtml", "a"),
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17926 can_use_save_link = "download" in save_link,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17927 click = function (node) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17928 var event = doc.createEvent("MouseEvents");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17929 event.initMouseEvent("click", true, false, view, 0, 0, 0, 0, 0, false, false, false, false, 0, null);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17930 node.dispatchEvent(event);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17931 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17932 webkit_req_fs = view.webkitRequestFileSystem,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17933 req_fs = view.requestFileSystem \|\| webkit_req_fs \|\| view.mozRequestFileSystem,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17934 throw_outside = function (ex) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17935 (view.setImmediate \|\| view.setTimeout)(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17936 throw ex;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17937 }, 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17938 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17939 force_saveable_type = "application/octet-stream",
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17940 fs_min_size = 0,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17941 deletion_queue = [],
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17942 process_deletion_queue = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17943 var i = deletion_queue.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17944 while (i--) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17945 var file = deletion_queue[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17946 if (typeof file === "string") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17947 // file is an object URL
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17948 URL.revokeObjectURL(file);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17949 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17950 // file is a File
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17951 file.remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17952 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17953 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17954 deletion_queue.length = 0; // clear queue
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17955 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17956 dispatch = function (filesaver, event_types, event) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17957 event_types = [].concat(event_types);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17958 var i = event_types.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17959 while (i--) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17960 var listener = filesaver["on" + event_types[i]];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17961 if (typeof listener === "function") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17962 try {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17963 listener.call(filesaver, event \|\| filesaver);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17964 } catch (ex) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17965 throw_outside(ex);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17966 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17967 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17968 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17969 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17970 FileSaver = function (blob, name) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17971 // First try a.download, then web filesystem, then object URLs
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17972 var filesaver = this,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17973 type = blob.type,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17974 blob_changed = false,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17975 object_url,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17976 target_view,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17977 get_object_url = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17978 var object_url = get_URL().createObjectURL(blob);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17979 deletion_queue.push(object_url);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17980 return object_url;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17981 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17982 dispatch_all = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17983 dispatch(filesaver, "writestart progress write writeend".split(" "));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17984 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17985 // on any filesys errors revert to saving with object URLs
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17986 ,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17987 fs_error = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17988 // don't create more object URLs than needed
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17989 if (blob_changed \|\| !object_url) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17990 object_url = get_object_url(blob);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17991 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17992 if (target_view) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17993 target_view.location.href = object_url;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17994 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17995 filesaver.readyState = filesaver.DONE;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17996 dispatch_all();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17997 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17998 abortable = function (func) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	17999 return function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18000 if (filesaver.readyState !== filesaver.DONE) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18001 return func.apply(this, arguments);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18002 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18003 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18004 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18005 create_if_not_found = { create: true, exclusive: false },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18006 slice;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18007 filesaver.readyState = filesaver.INIT;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18008 if (!name) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18009 name = "download";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18010 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18011 if (can_use_save_link) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18012 object_url = get_object_url(blob);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18013 save_link.href = object_url;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18014 save_link.download = name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18015 click(save_link);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18016 filesaver.readyState = filesaver.DONE;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18017 dispatch_all();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18018 return;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18019 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18020 // Object and web filesystem URLs have a problem saving in Google Chrome when
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18021 // viewed in a tab, so I force save with application/octet-stream
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18022 // http://code.google.com/p/chromium/issues/detail?id=91158
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18023 if (view.chrome && type && type !== force_saveable_type) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18024 slice = blob.slice \|\| blob.webkitSlice;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18025 blob = slice.call(blob, 0, blob.size, force_saveable_type);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18026 blob_changed = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18027 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18028 // Since I can't be sure that the guessed media type will trigger a download
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18029 // in WebKit, I append .download to the filename.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18030 // https://bugs.webkit.org/show_bug.cgi?id=65440
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18031 if (webkit_req_fs && name !== "download") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18032 name += ".download";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18033 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18034 if (type === force_saveable_type \|\| webkit_req_fs) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18035 target_view = view;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18036 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18037 target_view = view.open();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18038 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18039 if (!req_fs) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18040 fs_error();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18041 return;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18042 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18043 fs_min_size += blob.size;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18044 req_fs(view.TEMPORARY, fs_min_size, abortable(function (fs) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18045 fs.root.getDirectory("saved", create_if_not_found, abortable(function (dir) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18046 var save = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18047 dir.getFile(name, create_if_not_found, abortable(function (file) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18048 file.createWriter(abortable(function (writer) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18049 writer.onwriteend = function (event) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18050 target_view.location.href = file.toURL();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18051 deletion_queue.push(file);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18052 filesaver.readyState = filesaver.DONE;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18053 dispatch(filesaver, "writeend", event);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18054 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18055 writer.onerror = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18056 var error = writer.error;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18057 if (error.code !== error.ABORT_ERR) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18058 fs_error();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18059 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18060 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18061 "writestart progress write abort".split(" ").forEach(function (event) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18062 writer["on" + event] = filesaver["on" + event];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18063 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18064 writer.write(blob);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18065 filesaver.abort = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18066 writer.abort();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18067 filesaver.readyState = filesaver.DONE;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18068 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18069 filesaver.readyState = filesaver.WRITING;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18070 }), fs_error);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18071 }), fs_error);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18072 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18073 dir.getFile(name, { create: false }, abortable(function (file) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18074 // delete file if it already exists
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18075 file.remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18076 save();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18077 }), abortable(function (ex) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18078 if (ex.code === ex.NOT_FOUND_ERR) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18079 save();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18080 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18081 fs_error();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18082 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18083 }));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18084 }), fs_error);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18085 }), fs_error);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18086 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18087 FS_proto = FileSaver.prototype,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18088 saveAs = function (blob, name) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18089 return new FileSaver(blob, name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18090 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18091 FS_proto.abort = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18092 var filesaver = this;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18093 filesaver.readyState = filesaver.DONE;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18094 dispatch(filesaver, "abort");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18095 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18096 FS_proto.readyState = FS_proto.INIT = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18097 FS_proto.WRITING = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18098 FS_proto.DONE = 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18099
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18100 FS_proto.error = FS_proto.onwritestart = FS_proto.onprogress = FS_proto.onwrite = FS_proto.onabort = FS_proto.onerror = FS_proto.onwriteend = null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18101
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18102 view.addEventListener("unload", process_deletion_queue, false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18103 return saveAs;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18104 }(self);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18105
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18106 return saveAs;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18107 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18108
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18109 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18110 /* 218 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18111 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18112
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18113 var make_full_name = __webpack_require__(219);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18114
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18115 module.exports = function make_matrix_string(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18116
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18117 var inst_matrix = params.matrix;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18118
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18119 // get order indexes
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18120 var order_indexes = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18121 var inst_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18122 _.each(['row', 'col'], function (tmp_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18123
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18124 var inst_rc;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18125 // row/col names are reversed in saved orders
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18126 if (tmp_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18127 inst_rc = 'col';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18128 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18129 inst_rc = 'row';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18130 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18131
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18132 // use tmp_rc
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18133 inst_name = params.inst_order[tmp_rc];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18134
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18135 // use tmp_rc
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18136 order_indexes[inst_rc] = inst_matrix.orders[inst_name + '_' + tmp_rc];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18137 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18138
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18139 var matrix_string = '\t';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18140 var row_nodes = params.network_data.row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18141 var col_nodes = params.network_data.col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18142
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18143 // alternate column entry
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18144 for (var c_i = 0; c_i < order_indexes.col.length; c_i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18145
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18146 var inst_index = order_indexes.col[c_i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18147
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18148 var inst_col = col_nodes[inst_index];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18149 var col_name = make_full_name(params, inst_col, 'col');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18150
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18151 if (c_i < order_indexes.col.length - 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18152 matrix_string = matrix_string + col_name + '\t';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18153 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18154 matrix_string = matrix_string + col_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18155 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18156 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18157
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18158 var row_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18159 matrix_string = matrix_string + '\n';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18160
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18161 _.each(order_indexes.row, function (inst_index) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18162
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18163 // row names
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18164 row_data = inst_matrix.matrix[inst_index].row_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18165
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18166 // var row_name = inst_matrix.matrix[inst_index].name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18167 var inst_row = row_nodes[inst_index];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18168
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18169 // var row_name = inst_row.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18170 var row_name = make_full_name(params, inst_row, 'row');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18171
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18172 matrix_string = matrix_string + row_name + '\t';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18173
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18174 // alternate data entry
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18175 for (var r_i = 0; r_i < order_indexes.col.length; r_i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18176
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18177 // get the order
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18178 var col_index = order_indexes.col[r_i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18179
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18180 if (r_i < order_indexes.col.length - 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18181 matrix_string = matrix_string + String(row_data[col_index].value) + '\t';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18182 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18183 matrix_string = matrix_string + String(row_data[col_index].value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18184 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18185 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18186
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18187 matrix_string = matrix_string + '\n';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18188 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18189
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18190 return matrix_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18191 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18192
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18193 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18194 /* 219 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18195 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18196
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18197 module.exports = function make_full_name(params, inst_node, inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18198
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18199 var cat_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18200 var inst_name = inst_node.name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18201 var num_cats = params.viz.all_cats[inst_rc].length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18202
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18203 // make tuple if necessary
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18204 if (num_cats > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18205
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18206 inst_name = "('" + inst_name + "'";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18207
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18208 for (var cat_index = 0; cat_index < num_cats; cat_index++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18209 cat_name = 'cat-' + String(cat_index);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18210
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18211 inst_name = inst_name + ", '" + String(inst_node[cat_name]) + "'";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18212 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18213
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18214 inst_name = inst_name + ')';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18215 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18216
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18217 // always make names strings
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18218 inst_name = String(inst_name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18219 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18220
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18221 return inst_name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18222 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18223
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18224 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18225 /* 220 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18226 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18227
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18228 var deactivate_cropping = __webpack_require__(221);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18229
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18230 module.exports = function brush_crop_matrix() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18231
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18232 // get rows/cols from brush-extent
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18233 // works for differnt brushing directions (e.g. start end sites)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18234
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18235 var cgm = this;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18236 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18237
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18238 var clust_width = params.viz.clust.dim.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18239 var clust_height = params.viz.clust.dim.height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18240
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18241 var x = d3.scale.linear().domain([0, clust_width]).range([0, clust_width]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18242 var y = d3.scale.linear().domain([0, clust_height]).range([0, clust_height]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18243
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18244 // make brush group
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18245 d3.select(params.root + ' .clust_container').append('g').classed('brush_group', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18246
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18247 cgm.params.is_cropping = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18248
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18249 var brush = d3.svg.brush().x(x).y(y).on("brushend", brushend);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18250
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18251 d3.select(params.root + ' .brush_group').call(brush);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18252
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18253 function brushend() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18254
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18255 // do not display dendro crop buttons when cropping with brushing
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18256 d3.select(cgm.params.root + ' .col_dendro_icons_container').style('display', 'none');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18257 d3.select(cgm.params.root + ' .row_dendro_icons_container').style('display', 'none');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18258
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18259 var brushing_extent = brush.extent();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18260 var brush_start = brushing_extent[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18261 var brush_end = brushing_extent[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18262
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18263 var x_start = brush_start[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18264 var x_end = brush_end[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18265
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18266 var y_start = brush_start[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18267 var y_end = brush_end[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18268
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18269 if (x_start != x_end && y_start != y_end) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18270
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18271 setTimeout(deactivate_cropping, 500, cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18272
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18273 // find cropped nodes
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18274 var found_nodes = find_cropped_nodes(x_start, x_end, y_start, y_end, brush_start, brush_end);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18275
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18276 cgm.filter_viz_using_names(found_nodes);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18277
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18278 d3.select(params.root + ' .crop_button').style('color', '#337ab7').classed('fa-crop', false).classed('fa-undo', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18279 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18280 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18281
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18282 function find_cropped_nodes(x_start, x_end, y_start, y_end, brush_start, brush_end) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18283
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18284 // reverse if necessary (depending on how brushing was done)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18285 if (x_start > x_end) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18286 x_start = brush_end[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18287 x_end = brush_start[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18288 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18289
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18290 if (y_start > y_end) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18291 y_start = brush_end[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18292 y_end = brush_start[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18293 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18294
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18295 // add room to brushing
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18296 y_start = y_start - params.viz.rect_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18297 x_start = x_start - params.viz.rect_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18298
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18299 var found_nodes = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18300 found_nodes.row = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18301 found_nodes.col = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18302
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18303 // d3.selectAll(params.root+' .row_label_group')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18304 // .each(function(inst_row){
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18305
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18306 // // there is already bound data on the rows
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18307 // var inst_trans = d3.select(this)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18308 // .attr('transform');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18309
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18310 // var y_trans = Number(inst_trans.split(',')[1].split(')')[0]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18311
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18312 // if (y_trans > y_start && y_trans < y_end){
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18313
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18314 // found_nodes.row.push(inst_row.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18315
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18316 // }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18317
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18318 // });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18319
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18320 _.each(params.matrix.matrix, function (row_data) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18321 var y_trans = params.viz.y_scale(row_data.row_index);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18322
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18323 if (y_trans > y_start && y_trans < y_end) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18324 found_nodes.row.push(row_data.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18325 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18326 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18327
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18328 d3.selectAll(params.root + ' .col_label_text').each(function (inst_col) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18329
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18330 // there is already bound data on the cols
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18331 var inst_trans = d3.select(this).attr('transform');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18332
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18333 var x_trans = Number(inst_trans.split(',')[0].split('(')[1]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18334
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18335 if (x_trans > x_start && x_trans < x_end) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18336
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18337 found_nodes.col.push(inst_col.name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18338 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18339 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18340
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18341 return found_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18342 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18343
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18344 d3.selectAll(params.root + ' .extent').style('opacity', 0.2).style('fill', 'black');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18345 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18346
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18347 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18348 /* 221 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18349 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18350
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18351 module.exports = function deactivate_cropping(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18352
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18353 d3.select(cgm.params.root + ' .brush_group').transition().style('opacity', 0).remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18354
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18355 cgm.params.is_cropping = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18356 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18357
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18358 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18359 /* 222 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18360 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18361
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18362 var __WEBPACK_AMD_DEFINE_FACTORY__, __WEBPACK_AMD_DEFINE_ARRAY__, __WEBPACK_AMD_DEFINE_RESULT__;/*
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18363 D3.js Slider
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18364 Inspired by jQuery UI Slider
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18365 Copyright (c) 2013, Bjorn Sandvik - http://blog.thematicmapping.org
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18366 BSD license: http://opensource.org/licenses/BSD-3-Clause
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18367 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18368 (function (root, factory) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18369 if (true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18370 // AMD. Register as an anonymous module.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18371 !(__WEBPACK_AMD_DEFINE_ARRAY__ = [__webpack_require__(223)], __WEBPACK_AMD_DEFINE_FACTORY__ = (factory), __WEBPACK_AMD_DEFINE_RESULT__ = (typeof __WEBPACK_AMD_DEFINE_FACTORY__ === 'function' ? (__WEBPACK_AMD_DEFINE_FACTORY__.apply(exports, __WEBPACK_AMD_DEFINE_ARRAY__)) : __WEBPACK_AMD_DEFINE_FACTORY__), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18372 } else if (typeof exports === 'object') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18373 if (process.browser) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18374 // Browserify. Import css too using cssify.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18375 require('./d3.slider.css');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18376 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18377 // Node. Does not work with strict CommonJS, but
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18378 // only CommonJS-like environments that support module.exports,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18379 // like Node.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18380 module.exports = factory(require('d3'));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18381 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18382 // Browser globals (root is window)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18383 root.d3.slider = factory(root.d3);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18384 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18385 })(this, function (d3) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18386 return function module() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18387 "use strict";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18388
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18389 // Public variables width default settings
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18390
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18391 var min = 0,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18392 max = 100,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18393 step = 0.01,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18394 animate = false,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18395 orientation = "horizontal",
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18396 axis = false,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18397 margin = 50,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18398 value,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18399 active = 1,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18400 snap = false,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18401 scale;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18402
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18403 // Private variables
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18404 var axisScale,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18405 dispatch = d3.dispatch("slide", "slideend"),
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18406 formatPercent = d3.format(".2%"),
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18407 tickFormat = d3.format(".0"),
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18408 handle1,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18409 handle2 = null,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18410 divRange,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18411 sliderLength;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18412
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18413 function slider(selection) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18414 selection.each(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18415
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18416 // Create scale if not defined by user
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18417 if (!scale) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18418 scale = d3.scale.linear().domain([min, max]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18419 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18420
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18421 // Start value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18422 value = value \|\| scale.domain()[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18423
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18424 // DIV container
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18425 var div = d3.select(this).classed("d3-slider d3-slider-" + orientation, true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18426
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18427 var drag = d3.behavior.drag();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18428 drag.on('dragend', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18429 dispatch.slideend(d3.event, value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18430 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18431
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18432 // Slider handle
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18433 //if range slider, create two
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18434 // var divRange;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18435
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18436 if (toType(value) == "array" && value.length == 2) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18437 handle1 = div.append("a").classed("d3-slider-handle", true).attr("xlink:href", "#").attr('id', "handle-one").on("click", stopPropagation).call(drag);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18438 handle2 = div.append("a").classed("d3-slider-handle", true).attr('id', "handle-two").attr("xlink:href", "#").on("click", stopPropagation).call(drag);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18439 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18440 handle1 = div.append("a").classed("d3-slider-handle", true).attr("xlink:href", "#").attr('id', "handle-one").on("click", stopPropagation).call(drag);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18441 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18442
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18443 // Horizontal slider
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18444 if (orientation === "horizontal") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18445
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18446 div.on("click", onClickHorizontal);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18447
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18448 if (toType(value) == "array" && value.length == 2) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18449 divRange = d3.select(this).append('div').classed("d3-slider-range", true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18450
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18451 handle1.style("left", formatPercent(scale(value[0])));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18452 divRange.style("left", formatPercent(scale(value[0])));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18453 drag.on("drag", onDragHorizontal);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18454
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18455 var width = 100 - parseFloat(formatPercent(scale(value[1])));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18456 handle2.style("left", formatPercent(scale(value[1])));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18457 divRange.style("right", width + "%");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18458 drag.on("drag", onDragHorizontal);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18459 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18460 handle1.style("left", formatPercent(scale(value)));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18461 drag.on("drag", onDragHorizontal);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18462 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18463
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18464 sliderLength = parseInt(div.style("width"), 10);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18465 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18466 // Vertical
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18467
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18468 div.on("click", onClickVertical);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18469 drag.on("drag", onDragVertical);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18470 if (toType(value) == "array" && value.length == 2) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18471 divRange = d3.select(this).append('div').classed("d3-slider-range-vertical", true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18472
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18473 handle1.style("bottom", formatPercent(scale(value[0])));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18474 divRange.style("bottom", formatPercent(scale(value[0])));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18475 drag.on("drag", onDragVertical);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18476
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18477 var top = 100 - parseFloat(formatPercent(scale(value[1])));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18478 handle2.style("bottom", formatPercent(scale(value[1])));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18479 divRange.style("top", top + "%");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18480 drag.on("drag", onDragVertical);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18481 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18482 handle1.style("bottom", formatPercent(scale(value)));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18483 drag.on("drag", onDragVertical);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18484 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18485
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18486 sliderLength = parseInt(div.style("height"), 10);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18487 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18488
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18489 if (axis) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18490 createAxis(div);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18491 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18492
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18493 function createAxis(dom) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18494
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18495 // Create axis if not defined by user
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18496 if (typeof axis === "boolean") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18497
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18498 axis = d3.svg.axis().ticks(Math.round(sliderLength / 100)).tickFormat(tickFormat).orient(orientation === "horizontal" ? "bottom" : "right");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18499 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18500
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18501 // Copy slider scale to move from percentages to pixels
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18502 axisScale = scale.ticks ? scale.copy().range([0, sliderLength]) : scale.copy().rangePoints([0, sliderLength], 0.5);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18503 axis.scale(axisScale);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18504
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18505 // Create SVG axis container
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18506 var svg = dom.append("svg").classed("d3-slider-axis d3-slider-axis-" + axis.orient(), true).on("click", stopPropagation);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18507
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18508 var g = svg.append("g");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18509
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18510 // Horizontal axis
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18511 if (orientation === "horizontal") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18512
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18513 svg.style("margin-left", -margin + "px");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18514
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18515 svg.attr({
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18516 width: sliderLength + margin * 2,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18517 height: margin
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18518 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18519
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18520 if (axis.orient() === "top") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18521 svg.style("top", -margin + "px");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18522 g.attr("transform", "translate(" + margin + "," + margin + ")");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18523 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18524 // bottom
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18525 g.attr("transform", "translate(" + margin + ",0)");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18526 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18527 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18528 // Vertical
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18529
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18530 svg.style("top", -margin + "px");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18531
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18532 svg.attr({
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18533 width: margin,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18534 height: sliderLength + margin * 2
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18535 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18536
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18537 if (axis.orient() === "left") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18538 svg.style("left", -margin + "px");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18539 g.attr("transform", "translate(" + margin + "," + margin + ")");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18540 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18541 // right
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18542 g.attr("transform", "translate(" + 0 + "," + margin + ")");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18543 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18544 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18545
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18546 g.call(axis);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18547 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18548
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18549 function onClickHorizontal() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18550 if (toType(value) != "array") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18551 var pos = Math.max(0, Math.min(sliderLength, d3.event.offsetX \|\| d3.event.layerX));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18552 moveHandle(scale.invert ? stepValue(scale.invert(pos / sliderLength)) : nearestTick(pos / sliderLength));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18553 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18554 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18555
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18556 function onClickVertical() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18557 if (toType(value) != "array") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18558 var pos = sliderLength - Math.max(0, Math.min(sliderLength, d3.event.offsetY \|\| d3.event.layerY));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18559 moveHandle(scale.invert ? stepValue(scale.invert(pos / sliderLength)) : nearestTick(pos / sliderLength));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18560 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18561 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18562
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18563 function onDragHorizontal() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18564 if (d3.event.sourceEvent.target.id === "handle-one") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18565 active = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18566 } else if (d3.event.sourceEvent.target.id == "handle-two") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18567 active = 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18568 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18569 var pos = Math.max(0, Math.min(sliderLength, d3.event.x));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18570 moveHandle(scale.invert ? stepValue(scale.invert(pos / sliderLength)) : nearestTick(pos / sliderLength));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18571 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18572
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18573 function onDragVertical() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18574 if (d3.event.sourceEvent.target.id === "handle-one") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18575 active = 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18576 } else if (d3.event.sourceEvent.target.id == "handle-two") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18577 active = 2;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18578 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18579 var pos = sliderLength - Math.max(0, Math.min(sliderLength, d3.event.y));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18580 moveHandle(scale.invert ? stepValue(scale.invert(pos / sliderLength)) : nearestTick(pos / sliderLength));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18581 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18582
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18583 function stopPropagation() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18584 d3.event.stopPropagation();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18585 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18586 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18587 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18588
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18589 // Move slider handle on click/drag
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18590 function moveHandle(newValue) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18591 var currentValue = toType(value) == "array" && value.length == 2 ? value[active - 1] : value,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18592 oldPos = formatPercent(scale(stepValue(currentValue))),
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18593 newPos = formatPercent(scale(stepValue(newValue))),
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18594 position = orientation === "horizontal" ? "left" : "bottom";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18595 if (oldPos !== newPos) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18596
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18597 if (toType(value) == "array" && value.length == 2) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18598 value[active - 1] = newValue;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18599 if (d3.event) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18600 dispatch.slide(d3.event, value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18601 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18602 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18603 if (d3.event) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18604 dispatch.slide(d3.event.sourceEvent \|\| d3.event, value = newValue);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18605 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18606 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18607
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18608 if (value[0] >= value[1]) return;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18609 if (active === 1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18610 if (toType(value) == "array" && value.length == 2) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18611 position === "left" ? divRange.style("left", newPos) : divRange.style("bottom", newPos);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18612 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18613
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18614 if (animate) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18615 handle1.transition().styleTween(position, function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18616 return d3.interpolate(oldPos, newPos);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18617 }).duration(typeof animate === "number" ? animate : 250);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18618 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18619 handle1.style(position, newPos);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18620 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18621 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18622
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18623 var width = 100 - parseFloat(newPos);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18624 var top = 100 - parseFloat(newPos);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18625
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18626 position === "left" ? divRange.style("right", width + "%") : divRange.style("top", top + "%");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18627
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18628 if (animate) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18629 handle2.transition().styleTween(position, function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18630 return d3.interpolate(oldPos, newPos);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18631 }).duration(typeof animate === "number" ? animate : 250);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18632 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18633 handle2.style(position, newPos);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18634 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18635 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18636 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18637 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18638
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18639 // Calculate nearest step value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18640 function stepValue(val) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18641
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18642 if (val === scale.domain()[0] \|\| val === scale.domain()[1]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18643 return val;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18644 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18645
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18646 var alignValue = val;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18647 if (snap) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18648 alignValue = nearestTick(scale(val));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18649 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18650 var valModStep = (val - scale.domain()[0]) % step;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18651 alignValue = val - valModStep;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18652
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18653 if (Math.abs(valModStep) * 2 >= step) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18654 alignValue += valModStep > 0 ? step : -step;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18655 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18656 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18657
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18658 return alignValue;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18659 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18660
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18661 // Find the nearest tick
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18662 function nearestTick(pos) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18663 var ticks = scale.ticks ? scale.ticks() : scale.domain();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18664 var dist = ticks.map(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18665 return pos - scale(d);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18666 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18667 var i = -1,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18668 index = 0,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18669 r = scale.ticks ? scale.range()[1] : scale.rangeExtent()[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18670 do {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18671 i++;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18672 if (Math.abs(dist[i]) < r) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18673 r = Math.abs(dist[i]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18674 index = i;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18675 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18676 } while (dist[i] > 0 && i < dist.length - 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18677
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18678 return ticks[index];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18679 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18680
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18681 // Return the type of an object
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18682 function toType(v) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18683 return {}.toString.call(v).match(/\s([a-zA-Z]+)/)[1].toLowerCase();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18684 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18685
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18686 // Getter/setter functions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18687 slider.min = function (_) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18688 if (!arguments.length) return min;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18689 min = _;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18690 return slider;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18691 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18692
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18693 slider.max = function (_) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18694 if (!arguments.length) return max;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18695 max = _;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18696 return slider;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18697 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18698
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18699 slider.step = function (_) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18700 if (!arguments.length) return step;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18701 step = _;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18702 return slider;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18703 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18704
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18705 slider.animate = function (_) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18706 if (!arguments.length) return animate;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18707 animate = _;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18708 return slider;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18709 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18710
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18711 slider.orientation = function (_) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18712 if (!arguments.length) return orientation;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18713 orientation = _;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18714 return slider;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18715 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18716
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18717 slider.axis = function (_) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18718 if (!arguments.length) return axis;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18719 axis = _;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18720 return slider;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18721 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18722
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18723 slider.margin = function (_) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18724 if (!arguments.length) return margin;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18725 margin = _;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18726 return slider;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18727 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18728
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18729 slider.value = function (_) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18730 if (!arguments.length) return value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18731 if (value) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18732 moveHandle(stepValue(_));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18733 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18734 value = _;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18735 return slider;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18736 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18737
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18738 slider.snap = function (_) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18739 if (!arguments.length) return snap;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18740 snap = _;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18741 return slider;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18742 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18743
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18744 slider.scale = function (_) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18745 if (!arguments.length) return scale;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18746 scale = _;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18747 return slider;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18748 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18749
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18750 d3.rebind(slider, dispatch, "on");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18751
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18752 return slider;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18753 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18754 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18755
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18756 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18757 /* 223 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18758 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18759
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18760 module.exports = d3;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18761
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18762 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18763 /* 224 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18764 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18765
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18766 /**
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18767 * Simple, lightweight, usable local autocomplete library for modern browsers
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18768 * Because there weren’t enough autocomplete scripts in the world? Because I’m completely insane and have NIH syndrome? Probably both. :P
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18769 * @author Lea Verou http://leaverou.github.io/awesomplete
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18770 * MIT license
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18771 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18772
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18773 (function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18774
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18775 var _ = function (input, o) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18776 var me = this;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18777
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18778 // Setup
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18779
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18780 this.input = $(input);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18781 this.input.setAttribute("autocomplete", "off");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18782 this.input.setAttribute("aria-autocomplete", "list");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18783
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18784 o = o \|\| {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18785
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18786 configure(this, {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18787 minChars: 2,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18788 maxItems: 10,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18789 autoFirst: false,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18790 data: _.DATA,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18791 filter: _.FILTER_CONTAINS,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18792 sort: _.SORT_BYLENGTH,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18793 item: _.ITEM,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18794 replace: _.REPLACE
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18795 }, o);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18796
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18797 this.index = -1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18798
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18799 // Create necessary elements
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18800
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18801 this.container = $.create("div", {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18802 className: "awesomplete",
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18803 around: input
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18804 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18805
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18806 this.ul = $.create("ul", {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18807 hidden: "hidden",
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18808 inside: this.container
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18809 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18810
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18811 this.status = $.create("span", {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18812 className: "visually-hidden",
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18813 role: "status",
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18814 "aria-live": "assertive",
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18815 "aria-relevant": "additions",
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18816 inside: this.container
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18817 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18818
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18819 // Bind events
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18820
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18821 $.bind(this.input, {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18822 "input": this.evaluate.bind(this),
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18823 "blur": this.close.bind(this, { reason: "blur" }),
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18824 "keydown": function (evt) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18825 var c = evt.keyCode;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18826
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18827 // If the dropdown `ul` is in view, then act on keydown for the following keys:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18828 // Enter / Esc / Up / Down
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18829 if (me.opened) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18830 if (c === 13 && me.selected) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18831 // Enter
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18832 evt.preventDefault();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18833 me.select();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18834 } else if (c === 27) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18835 // Esc
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18836 me.close({ reason: "esc" });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18837 } else if (c === 38 \|\| c === 40) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18838 // Down/Up arrow
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18839 evt.preventDefault();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18840 me[c === 38 ? "previous" : "next"]();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18841 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18842 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18843 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18844 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18845
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18846 $.bind(this.input.form, { "submit": this.close.bind(this, { reason: "submit" }) });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18847
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18848 $.bind(this.ul, { "mousedown": function (evt) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18849 var li = evt.target;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18850
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18851 if (li !== this) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18852
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18853 while (li && !/li/i.test(li.nodeName)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18854 li = li.parentNode;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18855 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18856
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18857 if (li && evt.button === 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18858 // Only select on left click
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18859 evt.preventDefault();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18860 me.select(li, evt.target);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18861 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18862 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18863 } });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18864
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18865 if (this.input.hasAttribute("list")) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18866 this.list = "#" + this.input.getAttribute("list");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18867 this.input.removeAttribute("list");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18868 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18869 this.list = this.input.getAttribute("data-list") \|\| o.list \|\| [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18870 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18871
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18872 _.all.push(this);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18873 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18874
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18875 _.prototype = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18876 set list(list) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18877 if (Array.isArray(list)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18878 this._list = list;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18879 } else if (typeof list === "string" && list.indexOf(",") > -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18880 this._list = list.split(/\s,\s/);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18881 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18882 // Element or CSS selector
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18883 list = $(list);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18884
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18885 if (list && list.children) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18886 var items = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18887 slice.apply(list.children).forEach(function (el) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18888 if (!el.disabled) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18889 var text = el.textContent.trim();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18890 var value = el.value \|\| text;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18891 var label = el.label \|\| text;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18892 if (value !== "") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18893 items.push({ label: label, value: value });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18894 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18895 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18896 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18897 this._list = items;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18898 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18899 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18900
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18901 if (document.activeElement === this.input) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18902 this.evaluate();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18903 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18904 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18905
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18906 get selected() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18907 return this.index > -1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18908 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18909
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18910 get opened() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18911 return !this.ul.hasAttribute("hidden");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18912 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18913
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18914 close: function (o) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18915 if (!this.opened) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18916 return;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18917 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18918
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18919 this.ul.setAttribute("hidden", "");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18920 this.index = -1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18921
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18922 $.fire(this.input, "awesomplete-close", o \|\| {});
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18923 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18924
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18925 open: function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18926 this.ul.removeAttribute("hidden");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18927
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18928 if (this.autoFirst && this.index === -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18929 this.goto(0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18930 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18931
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18932 $.fire(this.input, "awesomplete-open");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18933 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18934
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18935 next: function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18936 var count = this.ul.children.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18937
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18938 this.goto(this.index < count - 1 ? this.index + 1 : -1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18939 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18940
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18941 previous: function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18942 var count = this.ul.children.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18943
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18944 this.goto(this.selected ? this.index - 1 : count - 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18945 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18946
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18947 // Should not be used, highlights specific item without any checks!
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18948 goto: function (i) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18949 var lis = this.ul.children;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18950
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18951 if (this.selected) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18952 lis[this.index].setAttribute("aria-selected", "false");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18953 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18954
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18955 this.index = i;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18956
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18957 if (i > -1 && lis.length > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18958 lis[i].setAttribute("aria-selected", "true");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18959 this.status.textContent = lis[i].textContent;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18960
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18961 $.fire(this.input, "awesomplete-highlight", {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18962 text: this.suggestions[this.index]
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18963 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18964 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18965 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18966
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18967 select: function (selected, origin) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18968 if (selected) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18969 this.index = $.siblingIndex(selected);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18970 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18971 selected = this.ul.children[this.index];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18972 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18973
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18974 if (selected) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18975 var suggestion = this.suggestions[this.index];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18976
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18977 var allowed = $.fire(this.input, "awesomplete-select", {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18978 text: suggestion,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18979 origin: origin \|\| selected
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18980 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18981
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18982 if (allowed) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18983 this.replace(suggestion);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18984 this.close({ reason: "select" });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18985 $.fire(this.input, "awesomplete-selectcomplete", {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18986 text: suggestion
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18987 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18988 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18989 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18990 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18991
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18992 evaluate: function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18993 var me = this;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18994 var value = this.input.value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18995
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18996 if (value.length >= this.minChars && this._list.length > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18997 this.index = -1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18998 // Populate list with options that match
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	18999 this.ul.innerHTML = "";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19000
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19001 this.suggestions = this._list.map(function (item) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19002 return new Suggestion(me.data(item, value));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19003 }).filter(function (item) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19004 return me.filter(item, value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19005 }).sort(this.sort).slice(0, this.maxItems);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19006
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19007 this.suggestions.forEach(function (text) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19008 me.ul.appendChild(me.item(text, value));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19009 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19010
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19011 if (this.ul.children.length === 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19012 this.close({ reason: "nomatches" });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19013 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19014 this.open();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19015 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19016 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19017 this.close({ reason: "nomatches" });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19018 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19019 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19020 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19021
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19022 // Static methods/properties
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19023
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19024 _.all = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19025
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19026 _.FILTER_CONTAINS = function (text, input) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19027 return RegExp($.regExpEscape(input.trim()), "i").test(text);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19028 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19029
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19030 _.FILTER_STARTSWITH = function (text, input) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19031 return RegExp("^" + $.regExpEscape(input.trim()), "i").test(text);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19032 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19033
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19034 _.SORT_BYLENGTH = function (a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19035 if (a.length !== b.length) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19036 return a.length - b.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19037 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19038
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19039 return a < b ? -1 : 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19040 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19041
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19042 _.ITEM = function (text, input) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19043 var html = input === '' ? text : text.replace(RegExp($.regExpEscape(input.trim()), "gi"), "<mark>$&</mark>");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19044 return $.create("li", {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19045 innerHTML: html,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19046 "aria-selected": "false"
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19047 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19048 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19049
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19050 _.REPLACE = function (text) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19051 this.input.value = text.value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19052 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19053
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19054 _.DATA = function (item /, input/) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19055 return item;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19056 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19057
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19058 // Private functions
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19059
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19060 function Suggestion(data) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19061 var o = Array.isArray(data) ? { label: data[0], value: data[1] } : typeof data === "object" && "label" in data && "value" in data ? data : { label: data, value: data };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19062
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19063 this.label = o.label \|\| o.value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19064 this.value = o.value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19065 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19066 Object.defineProperty(Suggestion.prototype = Object.create(String.prototype), "length", {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19067 get: function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19068 return this.label.length;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19069 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19070 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19071 Suggestion.prototype.toString = Suggestion.prototype.valueOf = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19072 return "" + this.label;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19073 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19074
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19075 function configure(instance, properties, o) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19076 for (var i in properties) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19077 var initial = properties[i],
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19078 attrValue = instance.input.getAttribute("data-" + i.toLowerCase());
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19079
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19080 if (typeof initial === "number") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19081 instance[i] = parseInt(attrValue);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19082 } else if (initial === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19083 // Boolean options must be false by default anyway
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19084 instance[i] = attrValue !== null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19085 } else if (initial instanceof Function) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19086 instance[i] = null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19087 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19088 instance[i] = attrValue;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19089 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19090
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19091 if (!instance[i] && instance[i] !== 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19092 instance[i] = i in o ? o[i] : initial;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19093 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19094 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19095 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19096
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19097 // Helpers
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19098
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19099 var slice = Array.prototype.slice;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19100
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19101 function $(expr, con) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19102 return typeof expr === "string" ? (con \|\| document).querySelector(expr) : expr \|\| null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19103 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19104
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19105 function $$(expr, con) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19106 return slice.call((con \|\| document).querySelectorAll(expr));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19107 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19108
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19109 $.create = function (tag, o) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19110 var element = document.createElement(tag);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19111
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19112 for (var i in o) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19113 var val = o[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19114
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19115 if (i === "inside") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19116 $(val).appendChild(element);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19117 } else if (i === "around") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19118 var ref = $(val);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19119 ref.parentNode.insertBefore(element, ref);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19120 element.appendChild(ref);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19121 } else if (i in element) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19122 element[i] = val;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19123 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19124 element.setAttribute(i, val);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19125 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19126 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19127
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19128 return element;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19129 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19130
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19131 $.bind = function (element, o) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19132 if (element) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19133 for (var event in o) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19134 var callback = o[event];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19135
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19136 event.split(/\s+/).forEach(function (event) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19137 element.addEventListener(event, callback);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19138 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19139 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19140 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19141 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19142
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19143 $.fire = function (target, type, properties) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19144 var evt = document.createEvent("HTMLEvents");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19145
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19146 evt.initEvent(type, true, true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19147
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19148 for (var j in properties) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19149 evt[j] = properties[j];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19150 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19151
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19152 return target.dispatchEvent(evt);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19153 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19154
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19155 $.regExpEscape = function (s) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19156 return s.replace(/[-\\^$*+?.()\|[\]{}]/g, "\\$&");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19157 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19158
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19159 $.siblingIndex = function (el) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19160 /* eslint-disable no-cond-assign */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19161 for (var i = 0; el = el.previousElementSibling; i++);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19162 return i;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19163 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19164
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19165 // Initialization
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19166
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19167 function init() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19168 $$("input.awesomplete").forEach(function (input) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19169 new _(input);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19170 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19171 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19172
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19173 // Are we in a browser? Check for Document constructor
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19174 if (typeof Document !== "undefined") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19175 // DOM already loaded?
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19176 if (document.readyState !== "loading") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19177 init();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19178 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19179 // Wait for it
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19180 document.addEventListener("DOMContentLoaded", init);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19181 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19182 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19183
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19184 _.$ = $;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19185 _.$$ = $$;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19186
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19187 // Make sure to export Awesomplete on self when in a browser
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19188 if (typeof self !== "undefined") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19189 self.Awesomplete = _;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19190 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19191
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19192 // Expose Awesomplete as a CJS module
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19193 if (typeof module === "object" && module.exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19194 module.exports = _;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19195 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19196
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19197 return _;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19198 })();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19199
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19200 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19201 /* 225 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19202 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19203
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19204 // style-loader: Adds some css to the DOM by adding a <style> tag
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19205
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19206 // load the styles
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19207 var content = __webpack_require__(226);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19208 if(typeof content === 'string') content = [[module.id, content, '']];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19209 // add the styles to the DOM
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19210 var update = __webpack_require__(228)(content, {});
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19211 if(content.locals) module.exports = content.locals;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19212 // Hot Module Replacement
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19213 if(false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19214 // When the styles change, update the <style> tags
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19215 if(!content.locals) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19216 module.hot.accept("!!./../../node_modules/css-loader/index.js!./d3.slider.css", function() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19217 var newContent = require("!!./../../node_modules/css-loader/index.js!./d3.slider.css");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19218 if(typeof newContent === 'string') newContent = [[module.id, newContent, '']];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19219 update(newContent);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19220 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19221 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19222 // When the module is disposed, remove the <style> tags
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19223 module.hot.dispose(function() { update(); });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19224 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19225
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19226 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19227 /* 226 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19228 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19229
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19230 exports = module.exports = __webpack_require__(227)();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19231 // imports
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19232
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19233
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19234 // module
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19235 exports.push([module.id, ".d3-slider {\n position: relative;\n font-family: Verdana,Arial,sans-serif;\n font-size: 1.1em;\n border: 1px solid #aaaaaa;\n z-index: 2;\n}\n\n.d3-slider-horizontal {\n height: .8em;\n} \n\n.d3-slider-range {\n background:#2980b9;\n left:0px;\n right:0px;\n height: 0.8em;\n position: absolute;\n}\n\n.d3-slider-range-vertical {\n background:#2980b9;\n left:0px;\n right:0px;\n position: absolute;\n top:0;\n}\n\n.d3-slider-vertical {\n width: .8em;\n height: 100px;\n} \n\n.d3-slider-handle {\n position: absolute;\n width: 1.2em;\n height: 1.2em;\n border: 1px solid #d3d3d3;\n border-radius: 4px;\n background: #eee;\n background: linear-gradient(to bottom, #eee 0%, #ddd 100%);\n z-index: 3;\n}\n\n.d3-slider-handle:hover {\n border: 1px solid #999999;\n}\n\n.d3-slider-horizontal .d3-slider-handle {\n top: -.3em;\n margin-left: -.6em;\n}\n\n.d3-slider-axis {\n position: relative;\n z-index: 1; \n}\n\n.d3-slider-axis-bottom {\n top: .8em;\n}\n\n.d3-slider-axis-right {\n left: .8em;\n}\n\n.d3-slider-axis path {\n stroke-width: 0;\n fill: none;\n}\n\n.d3-slider-axis line {\n fill: none;\n stroke: #aaa;\n shape-rendering: crispEdges;\n}\n\n.d3-slider-axis text {\n font-size: 11px;\n}\n\n.d3-slider-vertical .d3-slider-handle {\n left: -.25em;\n margin-left: 0;\n margin-bottom: -.6em; \n}", ""]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19236
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19237 // exports
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19238
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19239
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19240 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19241 /* 227 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19242 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19243
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19244 /*
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19245 MIT License http://www.opensource.org/licenses/mit-license.php
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19246 Author Tobias Koppers @sokra
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19247 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19248 // css base code, injected by the css-loader
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19249 module.exports = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19250 var list = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19251
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19252 // return the list of modules as css string
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19253 list.toString = function toString() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19254 var result = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19255 for (var i = 0; i < this.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19256 var item = this[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19257 if (item[2]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19258 result.push("@media " + item[2] + "{" + item[1] + "}");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19259 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19260 result.push(item[1]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19261 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19262 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19263 return result.join("");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19264 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19265
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19266 // import a list of modules into the list
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19267 list.i = function (modules, mediaQuery) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19268 if (typeof modules === "string") modules = [[null, modules, ""]];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19269 var alreadyImportedModules = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19270 for (var i = 0; i < this.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19271 var id = this[i][0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19272 if (typeof id === "number") alreadyImportedModules[id] = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19273 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19274 for (i = 0; i < modules.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19275 var item = modules[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19276 // skip already imported module
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19277 // this implementation is not 100% perfect for weird media query combinations
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19278 // when a module is imported multiple times with different media queries.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19279 // I hope this will never occur (Hey this way we have smaller bundles)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19280 if (typeof item[0] !== "number" \|\| !alreadyImportedModules[item[0]]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19281 if (mediaQuery && !item[2]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19282 item[2] = mediaQuery;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19283 } else if (mediaQuery) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19284 item[2] = "(" + item[2] + ") and (" + mediaQuery + ")";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19285 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19286 list.push(item);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19287 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19288 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19289 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19290 return list;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19291 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19292
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19293 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19294 /* 228 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19295 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19296
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19297 /*
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19298 MIT License http://www.opensource.org/licenses/mit-license.php
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19299 Author Tobias Koppers @sokra
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19300 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19301 var stylesInDom = {},
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19302 memoize = function(fn) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19303 var memo;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19304 return function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19305 if (typeof memo === "undefined") memo = fn.apply(this, arguments);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19306 return memo;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19307 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19308 },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19309 isOldIE = memoize(function() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19310 return /msie [6-9]\b/.test(window.navigator.userAgent.toLowerCase());
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19311 }),
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19312 getHeadElement = memoize(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19313 return document.head \|\| document.getElementsByTagName("head")[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19314 }),
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19315 singletonElement = null,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19316 singletonCounter = 0,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19317 styleElementsInsertedAtTop = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19318
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19319 module.exports = function(list, options) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19320 if(false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19321 if(typeof document !== "object") throw new Error("The style-loader cannot be used in a non-browser environment");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19322 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19323
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19324 options = options \|\| {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19325 // Force single-tag solution on IE6-9, which has a hard limit on the # of <style>
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19326 // tags it will allow on a page
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19327 if (typeof options.singleton === "undefined") options.singleton = isOldIE();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19328
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19329 // By default, add <style> tags to the bottom of <head>.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19330 if (typeof options.insertAt === "undefined") options.insertAt = "bottom";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19331
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19332 var styles = listToStyles(list);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19333 addStylesToDom(styles, options);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19334
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19335 return function update(newList) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19336 var mayRemove = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19337 for(var i = 0; i < styles.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19338 var item = styles[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19339 var domStyle = stylesInDom[item.id];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19340 domStyle.refs--;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19341 mayRemove.push(domStyle);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19342 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19343 if(newList) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19344 var newStyles = listToStyles(newList);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19345 addStylesToDom(newStyles, options);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19346 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19347 for(var i = 0; i < mayRemove.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19348 var domStyle = mayRemove[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19349 if(domStyle.refs === 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19350 for(var j = 0; j < domStyle.parts.length; j++)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19351 domStyle.parts[j]();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19352 delete stylesInDom[domStyle.id];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19353 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19354 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19355 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19356 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19357
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19358 function addStylesToDom(styles, options) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19359 for(var i = 0; i < styles.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19360 var item = styles[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19361 var domStyle = stylesInDom[item.id];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19362 if(domStyle) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19363 domStyle.refs++;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19364 for(var j = 0; j < domStyle.parts.length; j++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19365 domStyle.parts[j](item.parts[j]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19366 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19367 for(; j < item.parts.length; j++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19368 domStyle.parts.push(addStyle(item.parts[j], options));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19369 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19370 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19371 var parts = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19372 for(var j = 0; j < item.parts.length; j++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19373 parts.push(addStyle(item.parts[j], options));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19374 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19375 stylesInDom[item.id] = {id: item.id, refs: 1, parts: parts};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19376 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19377 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19378 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19379
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19380 function listToStyles(list) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19381 var styles = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19382 var newStyles = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19383 for(var i = 0; i < list.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19384 var item = list[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19385 var id = item[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19386 var css = item[1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19387 var media = item[2];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19388 var sourceMap = item[3];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19389 var part = {css: css, media: media, sourceMap: sourceMap};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19390 if(!newStyles[id])
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19391 styles.push(newStyles[id] = {id: id, parts: [part]});
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19392 else
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19393 newStyles[id].parts.push(part);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19394 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19395 return styles;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19396 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19397
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19398 function insertStyleElement(options, styleElement) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19399 var head = getHeadElement();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19400 var lastStyleElementInsertedAtTop = styleElementsInsertedAtTop[styleElementsInsertedAtTop.length - 1];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19401 if (options.insertAt === "top") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19402 if(!lastStyleElementInsertedAtTop) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19403 head.insertBefore(styleElement, head.firstChild);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19404 } else if(lastStyleElementInsertedAtTop.nextSibling) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19405 head.insertBefore(styleElement, lastStyleElementInsertedAtTop.nextSibling);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19406 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19407 head.appendChild(styleElement);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19408 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19409 styleElementsInsertedAtTop.push(styleElement);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19410 } else if (options.insertAt === "bottom") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19411 head.appendChild(styleElement);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19412 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19413 throw new Error("Invalid value for parameter 'insertAt'. Must be 'top' or 'bottom'.");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19414 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19415 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19416
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19417 function removeStyleElement(styleElement) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19418 styleElement.parentNode.removeChild(styleElement);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19419 var idx = styleElementsInsertedAtTop.indexOf(styleElement);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19420 if(idx >= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19421 styleElementsInsertedAtTop.splice(idx, 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19422 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19423 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19424
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19425 function createStyleElement(options) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19426 var styleElement = document.createElement("style");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19427 styleElement.type = "text/css";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19428 insertStyleElement(options, styleElement);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19429 return styleElement;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19430 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19431
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19432 function createLinkElement(options) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19433 var linkElement = document.createElement("link");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19434 linkElement.rel = "stylesheet";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19435 insertStyleElement(options, linkElement);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19436 return linkElement;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19437 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19438
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19439 function addStyle(obj, options) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19440 var styleElement, update, remove;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19441
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19442 if (options.singleton) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19443 var styleIndex = singletonCounter++;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19444 styleElement = singletonElement \|\| (singletonElement = createStyleElement(options));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19445 update = applyToSingletonTag.bind(null, styleElement, styleIndex, false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19446 remove = applyToSingletonTag.bind(null, styleElement, styleIndex, true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19447 } else if(obj.sourceMap &&
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19448 typeof URL === "function" &&
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19449 typeof URL.createObjectURL === "function" &&
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19450 typeof URL.revokeObjectURL === "function" &&
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19451 typeof Blob === "function" &&
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19452 typeof btoa === "function") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19453 styleElement = createLinkElement(options);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19454 update = updateLink.bind(null, styleElement);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19455 remove = function() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19456 removeStyleElement(styleElement);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19457 if(styleElement.href)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19458 URL.revokeObjectURL(styleElement.href);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19459 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19460 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19461 styleElement = createStyleElement(options);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19462 update = applyToTag.bind(null, styleElement);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19463 remove = function() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19464 removeStyleElement(styleElement);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19465 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19466 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19467
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19468 update(obj);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19469
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19470 return function updateStyle(newObj) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19471 if(newObj) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19472 if(newObj.css === obj.css && newObj.media === obj.media && newObj.sourceMap === obj.sourceMap)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19473 return;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19474 update(obj = newObj);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19475 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19476 remove();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19477 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19478 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19479 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19480
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19481 var replaceText = (function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19482 var textStore = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19483
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19484 return function (index, replacement) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19485 textStore[index] = replacement;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19486 return textStore.filter(Boolean).join('\n');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19487 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19488 })();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19489
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19490 function applyToSingletonTag(styleElement, index, remove, obj) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19491 var css = remove ? "" : obj.css;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19492
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19493 if (styleElement.styleSheet) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19494 styleElement.styleSheet.cssText = replaceText(index, css);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19495 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19496 var cssNode = document.createTextNode(css);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19497 var childNodes = styleElement.childNodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19498 if (childNodes[index]) styleElement.removeChild(childNodes[index]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19499 if (childNodes.length) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19500 styleElement.insertBefore(cssNode, childNodes[index]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19501 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19502 styleElement.appendChild(cssNode);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19503 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19504 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19505 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19506
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19507 function applyToTag(styleElement, obj) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19508 var css = obj.css;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19509 var media = obj.media;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19510
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19511 if(media) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19512 styleElement.setAttribute("media", media)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19513 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19514
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19515 if(styleElement.styleSheet) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19516 styleElement.styleSheet.cssText = css;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19517 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19518 while(styleElement.firstChild) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19519 styleElement.removeChild(styleElement.firstChild);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19520 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19521 styleElement.appendChild(document.createTextNode(css));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19522 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19523 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19524
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19525 function updateLink(linkElement, obj) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19526 var css = obj.css;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19527 var sourceMap = obj.sourceMap;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19528
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19529 if(sourceMap) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19530 // http://stackoverflow.com/a/26603875
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19531 css += "\n/# sourceMappingURL=data:application/json;base64," + btoa(unescape(encodeURIComponent(JSON.stringify(sourceMap)))) + " /";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19532 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19533
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19534 var blob = new Blob([css], { type: "text/css" });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19535
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19536 var oldSrc = linkElement.href;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19537
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19538 linkElement.href = URL.createObjectURL(blob);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19539
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19540 if(oldSrc)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19541 URL.revokeObjectURL(oldSrc);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19542 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19543
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19544
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19545 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19546 /* 229 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19547 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19548
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19549 // style-loader: Adds some css to the DOM by adding a <style> tag
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19550
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19551 // load the styles
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19552 var content = __webpack_require__(230);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19553 if(typeof content === 'string') content = [[module.id, content, '']];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19554 // add the styles to the DOM
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19555 var update = __webpack_require__(228)(content, {});
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19556 if(content.locals) module.exports = content.locals;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19557 // Hot Module Replacement
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19558 if(false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19559 // When the styles change, update the <style> tags
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19560 if(!content.locals) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19561 module.hot.accept("!!./../css-loader/index.js!./awesomplete.css", function() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19562 var newContent = require("!!./../css-loader/index.js!./awesomplete.css");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19563 if(typeof newContent === 'string') newContent = [[module.id, newContent, '']];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19564 update(newContent);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19565 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19566 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19567 // When the module is disposed, remove the <style> tags
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19568 module.hot.dispose(function() { update(); });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19569 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19570
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19571 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19572 /* 230 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19573 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19574
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19575 exports = module.exports = __webpack_require__(227)();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19576 // imports
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19577
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19578
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19579 // module
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19580 exports.push([module.id, "[hidden] { display: none; }\n\n.visually-hidden {\n\tposition: absolute;\n\tclip: rect(0, 0, 0, 0);\n}\n\ndiv.awesomplete {\n\tdisplay: inline-block;\n\tposition: relative;\n}\n\ndiv.awesomplete > input {\n\tdisplay: block;\n}\n\ndiv.awesomplete > ul {\n\tposition: absolute;\n\tleft: 0;\n\tz-index: 1;\n\tmin-width: 100%;\n\tbox-sizing: border-box;\n\tlist-style: none;\n\tpadding: 0;\n\tborder-radius: .3em;\n\tmargin: .2em 0 0;\n\tbackground: hsla(0,0%,100%,.9);\n\tbackground: linear-gradient(to bottom right, white, hsla(0,0%,100%,.8));\n\tborder: 1px solid rgba(0,0,0,.3);\n\tbox-shadow: .05em .2em .6em rgba(0,0,0,.2);\n\ttext-shadow: none;\n}\n\ndiv.awesomplete > ul[hidden],\ndiv.awesomplete > ul:empty {\n\tdisplay: none;\n}\n\n@supports (transform: scale(0)) {\n\tdiv.awesomplete > ul {\n\t\ttransition: .3s cubic-bezier(.4,.2,.5,1.4);\n\t\ttransform-origin: 1.43em -.43em;\n\t}\n\t\n\tdiv.awesomplete > ul[hidden],\n\tdiv.awesomplete > ul:empty {\n\t\topacity: 0;\n\t\ttransform: scale(0);\n\t\tdisplay: block;\n\t\ttransition-timing-function: ease;\n\t}\n}\n\n\t/* Pointer */\n\tdiv.awesomplete > ul:before {\n\t\tcontent: \"\";\n\t\tposition: absolute;\n\t\ttop: -.43em;\n\t\tleft: 1em;\n\t\twidth: 0; height: 0;\n\t\tpadding: .4em;\n\t\tbackground: white;\n\t\tborder: inherit;\n\t\tborder-right: 0;\n\t\tborder-bottom: 0;\n\t\t-webkit-transform: rotate(45deg);\n\t\ttransform: rotate(45deg);\n\t}\n\n\tdiv.awesomplete > ul > li {\n\t\tposition: relative;\n\t\tpadding: .2em .5em;\n\t\tcursor: pointer;\n\t}\n\t\n\tdiv.awesomplete > ul > li:hover {\n\t\tbackground: hsl(200, 40%, 80%);\n\t\tcolor: black;\n\t}\n\t\n\tdiv.awesomplete > ul > li[aria-selected=\"true\"] {\n\t\tbackground: hsl(205, 40%, 40%);\n\t\tcolor: white;\n\t}\n\t\n\t\tdiv.awesomplete mark {\n\t\t\tbackground: hsl(65, 100%, 50%);\n\t\t}\n\t\t\n\t\tdiv.awesomplete li:hover mark {\n\t\t\tbackground: hsl(68, 100%, 41%);\n\t\t}\n\t\t\n\t\tdiv.awesomplete li[aria-selected=\"true\"] mark {\n\t\t\tbackground: hsl(86, 100%, 21%);\n\t\t\tcolor: inherit;\n\t\t}", ""]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19581
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19582 // exports
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19583
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19584
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19585 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19586 /* 231 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19587 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19588
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19589 var ini_sidebar = __webpack_require__(192);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19590 var set_up_filters = __webpack_require__(232);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19591 var set_up_search = __webpack_require__(237);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19592 var set_up_reorder = __webpack_require__(238);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19593 var set_sidebar_ini_view = __webpack_require__(239);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19594 var make_icons = __webpack_require__(240);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19595 var make_modals = __webpack_require__(242);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19596 var set_up_opacity_slider = __webpack_require__(244);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19597 var make_colorbar = __webpack_require__(245);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19598
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19599 /* Represents sidebar with controls.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19600 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19601 module.exports = function sidebar(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19602
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19603 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19604
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19605 var sidebar = d3.select(params.root + ' .sidebar_wrapper');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19606
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19607 // console.log('is_expand ',params.viz.is_expand)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19608
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19609 if (params.viz.is_expand) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19610 sidebar.style('display', 'none');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19611 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19612
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19613 sidebar.append('div').classed('title_section', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19614
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19615 if (params.sidebar.title != null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19616 sidebar.select('.title_section').append('h4')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19617 // .style('margin-left', params.sidebar.title_margin_left+'px')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19618 .style('margin-left', '20px').style('margin-top', '5px').style('margin-bottom', '0px').text(params.sidebar.title);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19619 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19620
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19621 sidebar.append('div').style('padding-right', '2px').classed('about_section', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19622
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19623 if (params.sidebar.about != null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19624
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19625 sidebar.select('.about_section').append('h5').classed('sidebar_text', true).style('margin-left', '7px').style('margin-top', '5px').style('margin-bottom', '2px').style('text-align', 'justify').html(params.sidebar.about);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19626 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19627
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19628 sidebar.append('div').classed('icons_section', true).style('text-align', 'center');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19629
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19630 if (cgm.params.make_modals) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19631 make_modals(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19632 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19633
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19634 if (params.sidebar.icons) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19635 make_icons(cgm, sidebar);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19636 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19637
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19638 set_up_reorder(params, sidebar);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19639
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19640 set_up_search(sidebar, params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19641
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19642 set_up_opacity_slider(sidebar);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19643
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19644 var possible_filter_names = _.keys(params.viz.possible_filters);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19645
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19646 if (possible_filter_names.indexOf('enr_score_type') > -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19647 possible_filter_names.sort(function (a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19648 return a.toLowerCase().localeCompare(b.toLowerCase());
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19649 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19650 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19651
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19652 cgm.slider_functions = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19653
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19654 _.each(possible_filter_names, function (inst_filter) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19655 set_up_filters(cgm, inst_filter);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19656 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19657
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19658 ini_sidebar(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19659
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19660 // when initializing the visualization using a view
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19661 if (params.ini_view !== null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19662
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19663 set_sidebar_ini_view(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19664
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19665 params.ini_view = null;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19666 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19667
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19668 make_colorbar(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19669 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19670
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19671 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19672 /* 232 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19673 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19674
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19675 var make_slider_filter = __webpack_require__(233);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19676 var make_button_filter = __webpack_require__(236);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19677
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19678 module.exports = function set_up_filters(cgm, filter_type) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19679
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19680 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19681
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19682 var div_filters = d3.select(params.root + ' .sidebar_wrapper').append('div').classed('div_filters', true).style('padding-left', '10px').style('padding-right', '10px');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19683
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19684 if (params.viz.possible_filters[filter_type] == 'numerical') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19685 make_slider_filter(cgm, filter_type, div_filters);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19686 } else if (params.viz.possible_filters[filter_type] == 'categorical') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19687 make_button_filter(cgm, filter_type, div_filters);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19688 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19689 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19690
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19691 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19692 /* 233 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19693 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19694
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19695 var make_filter_title = __webpack_require__(215);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19696 var run_filter_slider = __webpack_require__(234);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19697 var get_filter_default_state = __webpack_require__(5);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19698 var get_subset_views = __webpack_require__(12);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19699
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19700 d3.slider = __webpack_require__(222);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19701
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19702 module.exports = function make_slider_filter(cgm, filter_type, div_filters) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19703
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19704 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19705 var inst_view = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19706
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19707 var possible_filters = _.keys(params.viz.possible_filters);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19708
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19709 _.each(possible_filters, function (tmp_filter) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19710 if (tmp_filter != filter_type) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19711 var default_state = get_filter_default_state(params.viz.filter_data, tmp_filter);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19712 inst_view[tmp_filter] = default_state;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19713 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19714 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19715
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19716 var filter_title = make_filter_title(params, filter_type);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19717
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19718 div_filters.append('div').classed('title_' + filter_type, true).classed('sidebar_text', true).classed('slider_description', true).style('margin-top', '5px').style('margin-bottom', '3px').text(filter_title.text + filter_title.state + filter_title.suffix);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19719
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19720 div_filters.append('div').classed('slider_' + filter_type, true).classed('slider', true).attr('current_state', filter_title.state);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19721
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19722 var views = params.network_data.views;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19723
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19724 var available_views = get_subset_views(params, views, inst_view);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19725
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19726 // sort available views by filter_type value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19727 available_views = available_views.sort(function (a, b) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19728 return b[filter_type] - a[filter_type];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19729 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19730
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19731 var inst_max = available_views.length - 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19732
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19733 var ini_value = 0;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19734 // change the starting position of the slider if necessary
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19735 if (params.requested_view !== null && filter_type in params.requested_view) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19736
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19737 var inst_filter_value = params.requested_view[filter_type];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19738
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19739 if (inst_filter_value != 'all') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19740
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19741 var found_value = available_views.map(function (e) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19742 return e[filter_type];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19743 }).indexOf(inst_filter_value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19744
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19745 if (found_value > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19746 ini_value = found_value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19747 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19748 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19749 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19750
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19751 // Filter Slider
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19752 //////////////////////////////////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19753 var slide_filter_fun = d3.slider().value(ini_value).min(0).max(inst_max).step(1).on('slide', function (evt, value) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19754 run_filter_slider_db(cgm, filter_type, available_views, value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19755 }).on('slideend', function (evt, value) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19756 run_filter_slider_db(cgm, filter_type, available_views, value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19757 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19758
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19759 // save slider function in order to reset value later
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19760 cgm.slider_functions[filter_type] = slide_filter_fun;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19761
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19762 d3.select(cgm.params.root + ' .slider_' + filter_type).call(slide_filter_fun);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19763
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19764 //////////////////////////////////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19765
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19766 var run_filter_slider_db = _.debounce(run_filter_slider, 800);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19767 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19768
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19769 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19770 /* 234 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19771 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19772
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19773 var update_viz_with_view = __webpack_require__(177);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19774 var reset_other_filter_sliders = __webpack_require__(214);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19775 var get_current_orders = __webpack_require__(235);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19776 var make_requested_view = __webpack_require__(14);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19777
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19778 module.exports = function run_filter_slider(cgm, filter_type, available_views, inst_index) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19779
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19780 // only update if not running update
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19781 if (d3.select(cgm.params.viz.viz_svg).classed('running_update') === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19782
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19783 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19784
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19785 // get value
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19786 var inst_state = available_views[inst_index][filter_type];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19787
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19788 reset_other_filter_sliders(cgm, filter_type, inst_state);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19789
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19790 params = get_current_orders(params);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19791
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19792 var requested_view = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19793 requested_view[filter_type] = inst_state;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19794
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19795 requested_view = make_requested_view(params, requested_view);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19796
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19797 if (_.has(available_views[0], 'enr_score_type')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19798 var enr_state = d3.select(params.root + ' .toggle_enr_score_type').attr('current_state');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19799
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19800 requested_view.enr_score_type = enr_state;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19801 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19802
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19803 update_viz_with_view(cgm, requested_view);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19804 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19805 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19806
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19807 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19808 /* 235 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19809 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19810
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19811 module.exports = function get_current_orders(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19812
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19813 // get current orders
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19814 var other_rc;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19815 _.each(['row', 'col'], function (inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19816
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19817 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19818 other_rc = 'col';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19819 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19820 other_rc = 'row';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19821 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19822
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19823 if (d3.select(params.root + ' .toggle_' + other_rc + '_order .active').empty() === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19824
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19825 params.viz.inst_order[inst_rc] = d3.select(params.root + ' .toggle_' + other_rc + '_order').select('.active').attr('name');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19826 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19827
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19828 // default to cluster ordering
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19829 params.viz.inst_order[inst_rc] = 'clust';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19830 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19831 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19832
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19833 return params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19834 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19835
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19836 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19837 /* 236 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19838 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19839
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19840 // var update_network = require('../network/update_network');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19841 var make_requested_view = __webpack_require__(14);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19842
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19843 module.exports = function make_button_filter(config, params, filter_type, div_filters) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19844
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19845 /*
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19846 Enrichr specific code
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19847 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19848
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19849 var buttons = div_filters.append('div').classed('categorical_filter', true).classed('toggle_' + filter_type, true).classed('btn-group-vertical', true).style('width', '100%').style('margin-top', '10px').attr('current_state', 'combined_score');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19850
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19851 var filter_options = params.viz.filter_data[filter_type];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19852
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19853 var button_dict = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19854 'combined_score': 'Combined Score',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19855 'pval': 'P-Value',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19856 'zscore': 'Z-score'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19857 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19858
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19859 buttons.selectAll('button').data(filter_options).enter().append('button').attr('type', 'button').classed('btn', true).classed('btn-primary', true).classed('.filter_button', true).classed('active', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19860 var is_active = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19861 if (d == 'combined_score') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19862 is_active = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19863 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19864 return is_active;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19865 }).attr('name', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19866 return d;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19867 }).html(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19868 return button_dict[d];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19869 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19870
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19871 $(params.root + ' .categorical_filter .btn').off().click(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19872
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19873 d3.selectAll(params.root + ' .categorical_filter .btn').classed('active', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19874
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19875 d3.select(this).classed('active', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19876
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19877 var inst_state = d3.select(this).attr('name');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19878
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19879 var requested_view = { 'enr_score_type': inst_state };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19880
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19881 make_requested_view(params, requested_view);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19882
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19883 d3.select(params.root + ' .toggle_enr_score_type').attr('current_state', inst_state);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19884 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19885 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19886
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19887 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19888 /* 237 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19889 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19890
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19891 module.exports = function set_up_search(sidebar, params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19892
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19893 var search_container = sidebar.append('div')
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19894 // .classed('row',true)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19895 .classed('gene_search_container', true).style('padding-left', '10px').style('padding-right', '10px').style('margin-top', '10px');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19896
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19897 search_container.append('input').classed('form-control', true).classed('gene_search_box', true).classed('sidebar_text', true).attr('type', 'text').attr('placeholder', params.sidebar.row_search.placeholder).style('height', params.sidebar.row_search.box.height + 'px').style('margin-top', '10px');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19898
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19899 search_container.append('div').classed('gene_search_button', true).style('margin-top', '5px').attr('data-toggle', 'buttons').append('button').classed('sidebar_text', true).html('Search').attr('type', 'button').classed('btn', true).classed('btn-primary', true).classed('submit_gene_button', true).style('width', '100%').style('font-size', '14px');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19900 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19901
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19902 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19903 /* 238 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19904 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19905
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19906 // var get_cat_title = require('../categories/get_cat_title');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19907
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19908 module.exports = function set_up_reorder(params, sidebar) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19909
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19910 var button_dict;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19911 var tmp_orders;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19912 var rc_dict = { 'row': 'Row', 'col': 'Column', 'both': '' };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19913 var is_active;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19914 var inst_reorder;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19915 // var all_cats;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19916 // var inst_order_label;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19917
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19918 var reorder_section = sidebar.append('div').style('padding-left', '10px').style('padding-right', '10px').classed('reorder_section', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19919
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19920 var reorder_types;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19921 if (params.sim_mat) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19922 reorder_types = ['both'];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19923 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19924 reorder_types = ['row', 'col'];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19925 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19926
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19927 _.each(reorder_types, function (inst_rc) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19928
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19929 button_dict = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19930 'clust': 'Cluster',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19931 'rank': 'Rank by Sum',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19932 'rankvar': 'Rank by Variance',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19933 'ini': 'Initial Order',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19934 'alpha': 'Alphabetically'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19935 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19936
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19937 var other_rc;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19938 if (inst_rc === 'row') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19939 other_rc = 'col';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19940 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19941 other_rc = 'row';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19942 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19943
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19944 tmp_orders = Object.keys(params.matrix.orders);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19945
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19946 var possible_orders = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19947
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19948 _.each(tmp_orders, function (inst_name) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19949
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19950 if (inst_name.indexOf(other_rc) > -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19951 inst_name = inst_name.replace('_row', '').replace('_col', '');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19952
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19953 if (inst_name.indexOf('cat_') < 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19954 possible_orders.push(inst_name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19955 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19956 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19957 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19958
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19959 // specific to Enrichr
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19960 if (_.keys(params.viz.filter_data).indexOf('enr_score_type') > -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19961 possible_orders = ['clust', 'rank'];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19962 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19963
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19964 possible_orders = _.uniq(possible_orders);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19965
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19966 possible_orders = possible_orders.sort();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19967
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19968 var reorder_text;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19969 if (inst_rc != 'both') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19970 reorder_text = ' Order';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19971 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19972 reorder_text = 'Reorder Matrix';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19973 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19974
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19975 reorder_section.append('div').classed('sidebar_button_text', true).style('clear', 'both').style('margin-top', '10px').html(rc_dict[inst_rc] + reorder_text);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19976
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19977 inst_reorder = reorder_section.append('div').classed('btn-group-vertical', true).style('width', '100%').classed('toggle_' + inst_rc + '_order', true).attr('role', 'group');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19978
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19979 inst_reorder.selectAll('.button').data(possible_orders).enter().append('button').attr('type', 'button').classed('btn', true).classed('btn-primary', true).classed('sidebar_button_text', true).classed('active', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19980 is_active = false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19981 if (d == params.viz.inst_order[other_rc]) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19982 is_active = true;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19983 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19984 return is_active;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19985 }).attr('name', function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19986 return d;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19987 }).html(function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19988 return button_dict[d];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19989 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19990 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19991 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19992
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19993 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19994 /* 239 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19995 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19996
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19997 var make_filter_title = __webpack_require__(215);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19998
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	19999 module.exports = function set_sidebar_ini_view(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20000
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20001 _.each(_.keys(params.ini_view), function (inst_filter) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20002
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20003 // initialize filter slider using ini_view
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20004 var inst_value = params.ini_view[inst_filter];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20005
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20006 var filter_type = params.viz.possible_filters[inst_filter];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20007
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20008 if (filter_type === 'numerical') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20009
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20010 if (inst_value != 'all') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20011 inst_value = parseInt(inst_value, 10);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20012 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20013
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20014 if (params.viz.filter_data[inst_filter].indexOf(inst_value) <= -1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20015 inst_value = 'all';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20016 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20017
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20018 var filter_title = make_filter_title(params, inst_filter);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20019
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20020 d3.select(params.root + ' .title_' + inst_filter).text(filter_title.text + inst_value + filter_title.suffix);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20021
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20022 d3.select(params.root + ' .slider_' + inst_filter).attr('current_state', inst_value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20023 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20024
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20025 // set up button initialization
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20026
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20027 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20028 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20029 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20030
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20031 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20032 /* 240 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20033 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20034
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20035 var file_saver = __webpack_require__(217);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20036 var two_translate_zoom = __webpack_require__(116);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20037 var deactivate_cropping = __webpack_require__(221);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20038 var save_svg_png = __webpack_require__(241);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20039
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20040 module.exports = function make_icons(cgm, sidebar) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20041
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20042 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20043 // var saveSvgAsPng = save_svg_png();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20044 var saveAs = file_saver();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20045
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20046 var row = sidebar.select('.icons_section').style('margin-top', '7px').style('margin-left', '5%');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20047
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20048 var width_pct = '22%';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20049 var padding_left = '0px';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20050 var padding_right = '0px';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20051
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20052 row.append('div').classed('clust_icon', true).style('float', 'left').style('width', width_pct).style('padding-left', padding_left).style('padding-right', padding_right).append('i').classed('fa', true).classed('fa-share-alt', true).classed('icon_buttons', true).style('font-size', '25px').on('click', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20053 $(params.root + ' .share_info').modal('toggle');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20054 $('.share_url').val(window.location.href);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20055 }).classed('sidebar_tooltip', true).append('span').classed('sidebar_tooltip_text', true).html('Share').style('left', '0%');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20056
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20057 row.append('div').classed('clust_icon', true).style('float', 'left').style('width', width_pct).style('padding-left', padding_left).style('padding-right', padding_right).append('i').classed('fa', true).classed('fa-camera', true).classed('icon_buttons', true).style('font-size', '25px').on('click', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20058
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20059 $(params.root + ' .picture_info').modal('toggle');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20060 }).classed('sidebar_tooltip', true).append('span').classed('sidebar_tooltip_text', true).html('Take snapshot').style('left', '-100%');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20061
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20062 row.append('div').classed('clust_icon', true).style('float', 'left').style('width', width_pct).style('padding-left', padding_left).style('padding-right', padding_right).append('i').classed('fa', true).classed('fa fa-cloud-download', true).classed('icon_buttons', true).style('font-size', '25px').on('click', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20063
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20064 cgm.save_matrix();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20065 }).classed('sidebar_tooltip', true).append('span').classed('sidebar_tooltip_text', true).html('Download matrix').style('left', '-200%');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20066
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20067 row.append('div').classed('clust_icon', true).style('float', 'left').style('width', width_pct).style('padding-left', padding_left).style('padding-right', '-5px').append('i').classed('fa', true).classed('fa-crop', true).classed('crop_button', true).classed('icon_buttons', true).style('font-size', '25px').on('click', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20068
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20069 // do nothing if dendro filtering has been done
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20070 if (cgm.params.dendro_filter.row === false && cgm.params.dendro_filter.col === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20071
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20072 var is_crop = d3.select(this).classed('fa-crop');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20073
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20074 var is_undo = d3.select(this).classed('fa-undo');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20075
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20076 // press crop button (can be active/incative)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20077 if (is_crop) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20078
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20079 // keep list of names to return to state
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20080 cgm.params.crop_filter_nodes = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20081 cgm.params.crop_filter_nodes.row_nodes = cgm.params.network_data.row_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20082 cgm.params.crop_filter_nodes.col_nodes = cgm.params.network_data.col_nodes;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20083
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20084 cgm.brush_crop_matrix();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20085
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20086 if (d3.select(this).classed('active_cropping') === false) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20087
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20088 // set active_cropping (button turns red)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20089 d3.select(this).classed('active_cropping', true).style('color', 'red');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20090 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20091 // deactivate cropping (button turns blue)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20092 d3.select(this).classed('active_cropping', false).style('color', '#337ab7');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20093
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20094 deactivate_cropping(cgm);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20095 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20096 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20097
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20098 // press undo button
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20099 if (is_undo) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20100
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20101 d3.select(params.root + ' .crop_button').style('color', '#337ab7').classed('fa-crop', true).classed('fa-undo', false);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20102
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20103 // cgm.filter_viz_using_names(cgm.params.crop_filter_nodes);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20104 cgm.filter_viz_using_nodes(cgm.params.crop_filter_nodes);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20105
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20106 // show dendro crop buttons after brush-cropping has been undone
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20107 d3.select(cgm.params.root + ' .col_dendro_icons_container').style('display', 'block');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20108 d3.select(cgm.params.root + ' .row_dendro_icons_container').style('display', 'block');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20109 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20110
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20111 two_translate_zoom(cgm, 0, 0, 1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20112 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20113 }).classed('sidebar_tooltip', true).append('span').classed('sidebar_tooltip_text', true).html('Crop matrix').style('left', '-400%');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20114
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20115 // save svg: example from: http://bl.ocks.org/pgiraud/8955139#profile.json
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20116 ////////////////////////////////////////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20117 function save_clust_svg() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20118
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20119 d3.select(params.root + ' .expand_button').style('opacity', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20120
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20121 var html = d3.select(params.root + " .viz_svg").attr("title", "test2").attr("version", 1.1).attr("xmlns", "http://www.w3.org/2000/svg").node().parentNode.innerHTML;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20122
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20123 var blob = new Blob([html], { type: "image/svg+xml" });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20124
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20125 saveAs(blob, "clustergrammer.svg");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20126
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20127 d3.select(params.root + ' .expand_button').style('opacity', 0.4);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20128 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20129
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20130 d3.select(params.root + ' .download_buttons').append('p').append('a').html('Download SVG').on('click', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20131 save_clust_svg();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20132 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20133
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20134 var svg_id = 'svg_' + params.root.replace('#', '');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20135
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20136 // save as PNG
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20137 /////////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20138 d3.select(params.root + ' .download_buttons').append('p').append('a').html('Download PNG').on('click', function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20139 d3.select(params.root + ' .expand_button').style('opacity', 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20140 // saveSvgAsPng(document.getElementById(svg_id), "clustergrammer.png");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20141 save_svg_png.saveSvgAsPng(document.getElementById(svg_id), "clustergrammer.png");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20142 d3.select(params.root + ' .expand_button').style('opacity', 0.4);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20143 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20144 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20145
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20146 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20147 /* 241 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20148 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20149
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20150 var __WEBPACK_AMD_DEFINE_RESULT__;(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20151 var out$ = typeof exports != 'undefined' && exports \|\| "function" != 'undefined' && {} \|\| this;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20152
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20153 var doctype = '<?xml version="1.0" standalone="no"?><!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN" "http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd" [<!ENTITY nbsp " ">]>';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20154
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20155 function isElement(obj) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20156 return obj instanceof HTMLElement \|\| obj instanceof SVGElement;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20157 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20158
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20159 function requireDomNode(el) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20160 if (!isElement(el)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20161 throw new Error('an HTMLElement or SVGElement is required; got ' + el);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20162 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20163 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20164
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20165 function isExternal(url) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20166 return url && url.lastIndexOf('http', 0) == 0 && url.lastIndexOf(window.location.host) == -1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20167 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20168
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20169 function inlineImages(el, callback) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20170 requireDomNode(el);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20171
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20172 var images = el.querySelectorAll('image'),
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20173 left = images.length,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20174 checkDone = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20175 if (left === 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20176 callback();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20177 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20178 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20179
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20180 checkDone();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20181 for (var i = 0; i < images.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20182 (function (image) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20183 var href = image.getAttributeNS("http://www.w3.org/1999/xlink", "href");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20184 if (href) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20185 if (isExternal(href.value)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20186 console.warn("Cannot render embedded images linking to external hosts: " + href.value);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20187 return;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20188 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20189 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20190 var canvas = document.createElement('canvas');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20191 var ctx = canvas.getContext('2d');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20192 var img = new Image();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20193 img.crossOrigin = "anonymous";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20194 href = href \|\| image.getAttribute('href');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20195 if (href) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20196 img.src = href;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20197 img.onload = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20198 canvas.width = img.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20199 canvas.height = img.height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20200 ctx.drawImage(img, 0, 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20201 image.setAttributeNS("http://www.w3.org/1999/xlink", "href", canvas.toDataURL('image/png'));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20202 left--;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20203 checkDone();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20204 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20205 img.onerror = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20206 console.log("Could not load " + href);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20207 left--;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20208 checkDone();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20209 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20210 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20211 left--;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20212 checkDone();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20213 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20214 })(images[i]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20215 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20216 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20217
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20218 function styles(el, options, cssLoadedCallback) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20219 var selectorRemap = options.selectorRemap;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20220 var modifyStyle = options.modifyStyle;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20221 var css = "";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20222 // each font that has extranl link is saved into queue, and processed
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20223 // asynchronously
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20224 var fontsQueue = [];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20225 var sheets = document.styleSheets;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20226 for (var i = 0; i < sheets.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20227 try {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20228 var rules = sheets[i].cssRules;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20229 } catch (e) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20230 console.warn("Stylesheet could not be loaded: " + sheets[i].href);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20231 continue;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20232 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20233
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20234 if (rules != null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20235 for (var j = 0, match; j < rules.length; j++, match = null) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20236 var rule = rules[j];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20237 if (typeof rule.style != "undefined") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20238 var selectorText;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20239
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20240 try {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20241 selectorText = rule.selectorText;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20242 } catch (err) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20243 console.warn('The following CSS rule has an invalid selector: "' + rule + '"', err);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20244 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20245
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20246 try {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20247 if (selectorText) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20248 match = el.querySelector(selectorText);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20249 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20250 } catch (err) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20251 console.warn('Invalid CSS selector "' + selectorText + '"', err);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20252 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20253
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20254 if (match) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20255 var selector = selectorRemap ? selectorRemap(rule.selectorText) : rule.selectorText;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20256 var cssText = modifyStyle ? modifyStyle(rule.style.cssText) : rule.style.cssText;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20257 css += selector + " { " + cssText + " }\n";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20258 } else if (rule.cssText.match(/^@font-face/)) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20259 // below we are trying to find matches to external link. E.g.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20260 // @font-face {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20261 // // ...
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20262 // src: local('Abel'), url(https://fonts.gstatic.com/s/abel/v6/UzN-iejR1VoXU2Oc-7LsbvesZW2xOQ-xsNqO47m55DA.woff2);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20263 // }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20264 //
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20265 // This regex will save extrnal link into first capture group
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20266 var fontUrlRegexp = /url\(["']?(.+?)["']?\)/;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20267 // TODO: This needs to be changed to support multiple url declarations per font.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20268 var fontUrlMatch = rule.cssText.match(fontUrlRegexp);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20269
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20270 var externalFontUrl = fontUrlMatch && fontUrlMatch[1] \|\| '';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20271 var fontUrlIsDataURI = externalFontUrl.match(/^data:/);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20272 if (fontUrlIsDataURI) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20273 // We should ignore data uri - they are already embedded
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20274 externalFontUrl = '';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20275 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20276
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20277 if (externalFontUrl) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20278 // okay, we are lucky. We can fetch this font later
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20279 fontsQueue.push({
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20280 text: rule.cssText,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20281 // Pass url regex, so that once font is downladed, we can run `replace()` on it
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20282 fontUrlRegexp: fontUrlRegexp,
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20283 format: getFontMimeTypeFromUrl(externalFontUrl),
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20284 url: externalFontUrl
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20285 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20286 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20287 // otherwise, use previous logic
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20288 css += rule.cssText + '\n';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20289 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20290 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20291 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20292 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20293 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20294 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20295
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20296 // Now all css is processed, it's time to handle scheduled fonts
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20297 processFontQueue(fontsQueue);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20298
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20299 function getFontMimeTypeFromUrl(fontUrl) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20300 var supportedFormats = {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20301 'woff2': 'font/woff2',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20302 'woff': 'font/woff',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20303 'otf': 'application/x-font-opentype',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20304 'ttf': 'application/x-font-ttf',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20305 'eot': 'application/vnd.ms-fontobject',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20306 'sfnt': 'application/font-sfnt',
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20307 'svg': 'image/svg+xml'
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20308 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20309 var extensions = Object.keys(supportedFormats);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20310 for (var i = 0; i < extensions.length; ++i) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20311 var extension = extensions[i];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20312 // TODO: This is not bullet proof, it needs to handle edge cases...
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20313 if (fontUrl.indexOf('.' + extension) > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20314 return supportedFormats[extension];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20315 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20316 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20317
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20318 // If you see this error message, you probably need to update code above.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20319 console.error('Unknown font format for ' + fontUrl + '; Fonts may not be working correctly');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20320 return 'application/octet-stream';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20321 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20322
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20323 function processFontQueue(queue) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20324 if (queue.length > 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20325 // load fonts one by one until we have anything in the queue:
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20326 var font = queue.pop();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20327 processNext(font);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20328 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20329 // no more fonts to load.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20330 cssLoadedCallback(css);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20331 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20332
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20333 function processNext(font) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20334 // TODO: This could benefit from caching.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20335 var oReq = new XMLHttpRequest();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20336 oReq.addEventListener('load', fontLoaded);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20337 oReq.addEventListener('error', transferFailed);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20338 oReq.addEventListener('abort', transferFailed);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20339 oReq.open('GET', font.url);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20340 oReq.responseType = 'arraybuffer';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20341 oReq.send();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20342
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20343 function fontLoaded() {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20344 // TODO: it may be also worth to wait until fonts are fully loaded before
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20345 // attempting to rasterize them. (e.g. use https://developer.mozilla.org/en-US/docs/Web/API/FontFaceSet )
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20346 var fontBits = oReq.response;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20347 var fontInBase64 = arrayBufferToBase64(fontBits);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20348 updateFontStyle(font, fontInBase64);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20349 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20350
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20351 function transferFailed(e) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20352 console.warn('Failed to load font from: ' + font.url);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20353 console.warn(e);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20354 css += font.text + '\n';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20355 processFontQueue();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20356 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20357
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20358 function updateFontStyle(font, fontInBase64) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20359 var dataUrl = 'url("data:' + font.format + ';base64,' + fontInBase64 + '")';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20360 css += font.text.replace(font.fontUrlRegexp, dataUrl) + '\n';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20361
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20362 // schedule next font download on next tick.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20363 setTimeout(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20364 processFontQueue(queue);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20365 }, 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20366 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20367 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20368 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20369
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20370 function arrayBufferToBase64(buffer) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20371 var binary = '';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20372 var bytes = new Uint8Array(buffer);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20373 var len = bytes.byteLength;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20374
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20375 for (var i = 0; i < len; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20376 binary += String.fromCharCode(bytes[i]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20377 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20378
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20379 return window.btoa(binary);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20380 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20381 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20382
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20383 function getDimension(el, clone, dim) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20384 var v = el.viewBox && el.viewBox.baseVal && el.viewBox.baseVal[dim] \|\| clone.getAttribute(dim) !== null && !clone.getAttribute(dim).match(/%$/) && parseInt(clone.getAttribute(dim)) \|\| el.getBoundingClientRect()[dim] \|\| parseInt(clone.style[dim]) \|\| parseInt(window.getComputedStyle(el).getPropertyValue(dim));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20385 return typeof v === 'undefined' \|\| v === null \|\| isNaN(parseFloat(v)) ? 0 : v;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20386 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20387
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20388 function reEncode(data) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20389 data = encodeURIComponent(data);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20390 data = data.replace(/%([0-9A-F]{2})/g, function (match, p1) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20391 var c = String.fromCharCode('0x' + p1);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20392 return c === '%' ? '%25' : c;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20393 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20394 return decodeURIComponent(data);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20395 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20396
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20397 out$.prepareSvg = function (el, options, cb) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20398 requireDomNode(el);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20399
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20400 options = options \|\| {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20401 options.scale = options.scale \|\| 1;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20402 options.responsive = options.responsive \|\| false;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20403 var xmlns = "http://www.w3.org/2000/xmlns/";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20404
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20405 inlineImages(el, function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20406 var outer = document.createElement("div");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20407 var clone = el.cloneNode(true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20408 var width, height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20409 if (el.tagName == 'svg') {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20410 width = options.width \|\| getDimension(el, clone, 'width');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20411 height = options.height \|\| getDimension(el, clone, 'height');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20412 } else if (el.getBBox) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20413 var box = el.getBBox();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20414 width = box.x + box.width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20415 height = box.y + box.height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20416 clone.setAttribute('transform', clone.getAttribute('transform').replace(/translate\(.*?\)/, ''));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20417
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20418 var svg = document.createElementNS('http://www.w3.org/2000/svg', 'svg');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20419 svg.appendChild(clone);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20420 clone = svg;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20421 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20422 console.error('Attempted to render non-SVG element', el);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20423 return;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20424 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20425
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20426 clone.setAttribute("version", "1.1");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20427 if (!clone.getAttribute('xmlns')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20428 clone.setAttributeNS(xmlns, "xmlns", "http://www.w3.org/2000/svg");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20429 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20430 if (!clone.getAttribute('xmlns:xlink')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20431 clone.setAttributeNS(xmlns, "xmlns:xlink", "http://www.w3.org/1999/xlink");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20432 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20433
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20434 if (options.responsive) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20435 clone.removeAttribute('width');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20436 clone.removeAttribute('height');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20437 clone.setAttribute('preserveAspectRatio', 'xMinYMin meet');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20438 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20439 clone.setAttribute("width", width * options.scale);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20440 clone.setAttribute("height", height * options.scale);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20441 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20442
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20443 clone.setAttribute("viewBox", [options.left \|\| 0, options.top \|\| 0, width, height].join(" "));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20444
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20445 var fos = clone.querySelectorAll('foreignObject > *');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20446 for (var i = 0; i < fos.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20447 if (!fos[i].getAttribute('xmlns')) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20448 fos[i].setAttributeNS(xmlns, "xmlns", "http://www.w3.org/1999/xhtml");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20449 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20450 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20451
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20452 outer.appendChild(clone);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20453
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20454 // In case of custom fonts we need to fetch font first, and then inline
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20455 // its url into data-uri format (encode as base64). That's why style
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20456 // processing is done asynchonously. Once all inlining is finshed
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20457 // cssLoadedCallback() is called.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20458 styles(el, options, cssLoadedCallback);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20459
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20460 function cssLoadedCallback(css) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20461 // here all fonts are inlined, so that we can render them properly.
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20462 var s = document.createElement('style');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20463 s.setAttribute('type', 'text/css');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20464 s.innerHTML = "<![CDATA[\n" + css + "\n]]>";
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20465 var defs = document.createElement('defs');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20466 defs.appendChild(s);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20467 clone.insertBefore(defs, clone.firstChild);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20468
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20469 if (cb) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20470 var outHtml = outer.innerHTML;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20471 outHtml = outHtml.replace(/NS\d+:href/gi, 'xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20472 cb(outHtml, width, height);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20473 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20474 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20475 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20476 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20477
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20478 out$.svgAsDataUri = function (el, options, cb) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20479 out$.prepareSvg(el, options, function (svg) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20480 var uri = 'data:image/svg+xml;base64,' + window.btoa(reEncode(doctype + svg));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20481 if (cb) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20482 cb(uri);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20483 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20484 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20485 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20486
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20487 out$.svgAsPngUri = function (el, options, cb) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20488 requireDomNode(el);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20489
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20490 options = options \|\| {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20491 options.encoderType = options.encoderType \|\| 'image/png';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20492 options.encoderOptions = options.encoderOptions \|\| 0.8;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20493
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20494 var convertToPng = function (src, w, h) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20495 var canvas = document.createElement('canvas');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20496 var context = canvas.getContext('2d');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20497 canvas.width = w;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20498 canvas.height = h;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20499
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20500 if (options.canvg) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20501 options.canvg(canvas, src);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20502 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20503 context.drawImage(src, 0, 0);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20504 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20505
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20506 if (options.backgroundColor) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20507 context.globalCompositeOperation = 'destination-over';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20508 context.fillStyle = options.backgroundColor;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20509 context.fillRect(0, 0, canvas.width, canvas.height);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20510 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20511
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20512 var png;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20513 try {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20514 png = canvas.toDataURL(options.encoderType, options.encoderOptions);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20515 } catch (e) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20516 if (typeof SecurityError !== 'undefined' && e instanceof SecurityError \|\| e.name == "SecurityError") {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20517 console.error("Rendered SVG images cannot be downloaded in this browser.");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20518 return;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20519 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20520 throw e;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20521 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20522 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20523 cb(png);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20524 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20525
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20526 if (options.canvg) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20527 out$.prepareSvg(el, options, convertToPng);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20528 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20529 out$.svgAsDataUri(el, options, function (uri) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20530 var image = new Image();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20531
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20532 image.onload = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20533 convertToPng(image, image.width, image.height);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20534 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20535
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20536 image.onerror = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20537 console.error('There was an error loading the data URI as an image on the following SVG\n', window.atob(uri.slice(26)), '\n', "Open the following link to see browser's diagnosis\n", uri);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20538 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20539
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20540 image.src = uri;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20541 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20542 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20543 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20544
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20545 out$.download = function (name, uri) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20546 if (navigator.msSaveOrOpenBlob) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20547 navigator.msSaveOrOpenBlob(uriToBlob(uri), name);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20548 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20549 var saveLink = document.createElement('a');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20550 var downloadSupported = 'download' in saveLink;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20551 if (downloadSupported) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20552 saveLink.download = name;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20553 saveLink.href = uri;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20554 saveLink.style.display = 'none';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20555 document.body.appendChild(saveLink);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20556 saveLink.click();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20557 document.body.removeChild(saveLink);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20558 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20559 window.open(uri, '_temp', 'menubar=no,toolbar=no,status=no');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20560 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20561 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20562 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20563
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20564 function uriToBlob(uri) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20565 var byteString = window.atob(uri.split(',')[1]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20566 var mimeString = uri.split(',')[0].split(':')[1].split(';')[0];
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20567 var buffer = new ArrayBuffer(byteString.length);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20568 var intArray = new Uint8Array(buffer);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20569 for (var i = 0; i < byteString.length; i++) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20570 intArray[i] = byteString.charCodeAt(i);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20571 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20572 return new Blob([buffer], { type: mimeString });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20573 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20574
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20575 out$.saveSvg = function (el, name, options) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20576 requireDomNode(el);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20577
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20578 options = options \|\| {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20579 out$.svgAsDataUri(el, options, function (uri) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20580 out$.download(name, uri);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20581 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20582 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20583
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20584 out$.saveSvgAsPng = function (el, name, options) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20585 requireDomNode(el);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20586
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20587 options = options \|\| {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20588 out$.svgAsPngUri(el, options, function (uri) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20589 out$.download(name, uri);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20590 });
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20591 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20592
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20593 // if define is defined create as an AMD module
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20594 if (true) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20595 !(__WEBPACK_AMD_DEFINE_RESULT__ = function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20596 return out$;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20597 }.call(exports, __webpack_require__, exports, module), __WEBPACK_AMD_DEFINE_RESULT__ !== undefined && (module.exports = __WEBPACK_AMD_DEFINE_RESULT__));
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20598 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20599 })();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20600
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20601 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20602 /* 242 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20603 /***/ function(module, exports, __webpack_require__) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20604
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20605 var make_modal_skeleton = __webpack_require__(243);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20606
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20607 module.exports = function ini_modals(params) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20608
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20609 // share modal
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20610 ///////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20611 var share_modal = make_modal_skeleton(params, 'share_info');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20612
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20613 share_modal.header.append('a').attr('target', '_blank').attr('href', '/clustergrammer/');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20614
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20615 share_modal.header.append('h4').classed('modal-title', true).html('Share the visualization using the current URL:');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20616
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20617 share_modal.body.append('input').classed('bootstrap_highlight', true).classed('share_url', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20618
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20619 // picture modal
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20620 ///////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20621 var screenshot_modal = make_modal_skeleton(params, 'picture_info');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20622
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20623 screenshot_modal.header.append('h4').classed('modal-title', true).html('Save a snapshot of the visualization');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20624
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20625 screenshot_modal.body.append('div').classed('download_buttons', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20626
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20627 // dendro modal
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20628 ///////////////////////////////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20629 var dendro_modal = make_modal_skeleton(params, 'dendro_info');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20630
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20631 dendro_modal.header.append('h4').classed('modal-title', true).html('Cluster Information');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20632
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20633 dendro_modal.body.append('g').classed('cluster_info_container', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20634
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20635 dendro_modal.body.append('div').classed('dendro_text', true).append('input').classed('bootstrap_highlight', true).classed('current_names', true).style('width', '100%');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20636 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20637
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20638 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20639 /* 243 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20640 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20641
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20642 module.exports = function make_modal_skeleton(params, modal_class) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20643
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20644 var modal_skeleton = {};
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20645
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20646 var modal = d3.select(params.root).append('div').classed('modal', true).classed('fade', true).classed(modal_class, true).attr('role', 'dialog');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20647
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20648 var modal_dialog = modal.append('div').classed('modal-dialog', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20649
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20650 var modal_content = modal_dialog.append('div').classed('modal-content', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20651
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20652 modal_skeleton.header = modal_content.append('div').classed('modal-header', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20653
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20654 modal_skeleton.header.append('button').attr('type', 'button').classed('close', true).attr('data-dismiss', 'modal').html('×');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20655
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20656 modal_skeleton.body = modal_content.append('div').classed('modal-body', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20657
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20658 return modal_skeleton;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20659 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20660
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20661 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20662 /* 244 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20663 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20664
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20665 module.exports = function set_up_opacity_slider(sidebar) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20666
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20667 var slider_container = sidebar.append('div').classed('opacity_slider_container', true).style('margin-top', '5px').style('padding-left', '10px').style('padding-right', '10px');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20668
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20669 slider_container.append('div').classed('sidebar_text', true).classed('opacity_slider_text', true).style('margin-bottom', '3px').text('Opacity Slider');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20670
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20671 slider_container.append('div').classed('slider', true).classed('opacity_slider', true);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20672 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20673
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20674 /***/ },
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20675 /* 245 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20676 /***/ function(module, exports) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20677
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20678 module.exports = function make_colorbar(cgm) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20679
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20680 var params = cgm.params;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20681
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20682 d3.select(params.root + ' .sidebar_wrapper').append('div').classed('sidebar_text', true).style('padding-left', '10px').style('padding-top', '5px').text('Matrix Values');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20683
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20684 var colorbar_width = params.sidebar.width - 20;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20685 var colorbar_height = 13;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20686 var svg_height = 3 * colorbar_height;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20687 var svg_width = 1.2 * colorbar_width;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20688 var low_left_margin = 10;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20689 var top_margin = 33;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20690 var high_left_margin = colorbar_width + 10;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20691 var bar_margin_left = 10;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20692 var bar_margin_top = 3;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20693
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20694 var network_data = params.network_data;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20695
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20696 /* var max_link = _.max(network_data.links, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20697 return d.value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20698 }).value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20699
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20700 var min_link = _.min(network_data.links, function (d) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20701 return d.value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20702 }).value;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20703 */
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20704 var main_svg = d3.select(params.root + ' .sidebar_wrapper').append('svg').attr('height', svg_height + 'px').attr('width', svg_width + 'px');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20705
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20706 //Append a defs (for definition) element to your SVG
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20707 var defs = main_svg.append("defs");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20708
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20709 //Append a linearGradient element to the defs and give it a unique id
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20710 var linearGradient = defs.append("linearGradient").attr("id", "linear-gradient");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20711
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20712 var special_case = 'none';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20713
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20714 /* // no negative numbers
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20715 if (min_link >= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20716
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20717 //Set the color for the start (0%)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20718 linearGradient.append("stop").attr("offset", "0%").attr("stop-color", "white");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20719
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20720 //Set the color for the end (100%)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20721 linearGradient.append("stop").attr("offset", "100%").attr("stop-color", params.tile_colors[0]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20722
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20723 special_case = 'all_postiive';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20724
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20725 // no positive numbers
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20726 } else if (max_link <= 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20727
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20728 //Set the color for the start (0%)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20729 linearGradient.append("stop").attr("offset", "0%").attr("stop-color", params.tile_colors[1]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20730
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20731 //Set the color for the end (100%)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20732 linearGradient.append("stop").attr("offset", "100%").attr("stop-color", "white");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20733
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20734 special_case = 'all_negative';
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20735 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20736
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20737 // both postive and negative numbers
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20738 else {*/
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20739 //Set the color for the start (0%)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20740 linearGradient.append("stop").attr("offset", "0%").attr("stop-color", params.tile_colors[1]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20741
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20742 //Set the color for the end (100%)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20743 linearGradient.append("stop").attr("offset", "50%").attr("stop-color", "white");
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20744
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20745 //Set the color for the end (100%)
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20746 linearGradient.append("stop").attr("offset", "100%").attr("stop-color", params.tile_colors[0]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20747 // }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20748 // make colorbar
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20749 main_svg.append('rect').classed('background', true).attr('height', colorbar_height + 'px').attr('width', colorbar_width + 'px').attr('fill', 'url(#linear-gradient)').attr('transform', 'translate(' + bar_margin_left + ', ' + bar_margin_top + ')').attr('stroke', 'grey').attr('stroke-width', '0.25px');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20750
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20751 // make title
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20752 ///////////////
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20753
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20754 var max_abs_val = Math.abs(Math.round(params.matrix.true_max * 10) / 10);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20755 var min_abs_val = Math.abs(Math.round(params.matrix.true_min * 10) / 10);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20756 var font_size = 13;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20757
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20758 main_svg.append('text').text(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20759 var inst_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20760 if (params.matrix.true_min < 0) {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20761 inst_string = '-' + min_abs_val.toLocaleString();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20762 } else {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20763 inst_string = min_abs_val.toLocaleString();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20764 }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20765 return inst_string;
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20766 }).style('font-family', '"Helvetica Neue", Helvetica, Arial, sans-serif').style('font-weight', 300).style('font-size', font_size).attr('transform', 'translate(' + low_left_margin + ',' + top_margin + ')').attr('text-anchor', 'start');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20767
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20768 main_svg.append('text').text(max_abs_val.toLocaleString()).text(function () {
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20769 return max_abs_val.toLocaleString();
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20770 }).style('font-family', '"Helvetica Neue", Helvetica, Arial, sans-serif').style('font-weight', 300).style('font-size', font_size).attr('transform', 'translate(' + high_left_margin + ',' + top_margin + ')').attr('text-anchor', 'end');
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20771 };
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20772
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20773 /***/ }
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20774 /******/ ]);
fee56ee2f7ac "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit b11dfcf10d287c1da91ffb1d5d0148c7f8f61356" azomics parents: diff changeset	20775 //# sourceMappingURL=clustergrammer.js.map