# HG changeset patch # User azomics # Date 1624831996 0 # Node ID c90127c2a1ae1a331630233b877bd9e5c9d065b4 # Parent fee56ee2f7acbd4fe2e5894e5a15c4a596fd8542 "planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/clustergrammer_flow commit e47edffe14c2e8544fe0d00d932090657beae528" diff -r fee56ee2f7ac -r c90127c2a1ae clustergrammerIPG.py --- a/clustergrammerIPG.py Fri Jul 31 19:06:45 2020 -0400 +++ b/clustergrammerIPG.py Sun Jun 27 22:13:16 2021 +0000 @@ -13,12 +13,15 @@ from __future__ import print_function + +import os import sys -import os + +from clustergrammer import Network from jinja2 import Environment, FileSystemLoader + import pandas as pd -from clustergrammer import Network def is_integer(s): @@ -52,7 +55,8 @@ return(output_list) -def prepare_heatmap(matrix_input, html_file, html_dir, tools_dir, categories, distance, linkage): +def prepare_heatmap(matrix_input, html_file, html_dir, tools_dir, + categories, distance, linkage): # prepare directory and html os.mkdir(html_dir) @@ -91,7 +95,7 @@ } tmp_string = "-=-".join(args[8:]) - print (tmp_string + "\n") + print(tmp_string + "\n") # get categories cats = tmp_string.split("-=-new_cat-=-") for cat in cats: @@ -118,5 +122,5 @@ categories[tmp_cat[0]].append(group) print(categories) - - prepare_heatmap(args[1], args[2], args[3], args[4], categories, args[5], args[6]) + prepare_heatmap(args[1], args[2], args[3], + args[4], categories, args[5], args[6]) diff -r fee56ee2f7ac -r c90127c2a1ae clustergrammerIPG.xml --- a/clustergrammerIPG.xml Fri Jul 31 19:06:45 2020 -0400 +++ b/clustergrammerIPG.xml Sun Jun 27 22:13:16 2021 +0000 @@ -1,4 +1,4 @@ - + of a flow analysis using Clustergrammer jinja2