Mercurial > repos > azomics > flow_compensate
changeset 1:ffc083c86d44 draft default tip
"planemo upload for repository https://github.com/AstraZeneca-Omics/immport-galaxy-tools/tree/master/flowtools/flow_compensate commit fd7533e2c5c6c078bd2734c1ded95db9b74e450e"
| author | azomics |
|---|---|
| date | Wed, 23 Jun 2021 21:56:39 +0000 |
| parents | ca7ba337b727 |
| children | |
| files | flow-compensate.xml |
| diffstat | 1 files changed, 2 insertions(+), 1 deletions(-) [+] |
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--- a/flow-compensate.xml Tue May 25 00:07:44 2021 +0000 +++ b/flow-compensate.xml Wed Jun 23 21:56:39 2021 +0000 @@ -11,7 +11,7 @@ ln -s '$fcs' input_dir/'$fcs.element_identifier'; #end for mkdir -p output_dir; - Rscript '$compensate_script' '$compensation_matrix' input_dir output_dir + Rscript '$compensate_script' '$compensation_matrix' input_dir output_dir &> '$log_file' ]]></command> <configfiles> <configfile name="compensate_script"><![CDATA[ @@ -47,6 +47,7 @@ <collection name="compensated_fcs" format="fcs" label="${tool.name} compensated FCS files on ${on_string}" type="list"> <discover_datasets pattern="__designation_and_ext__" directory="output_dir" visible="true" /> </collection> + <data name="log_file" format="txt" label="Log for compensation by ${tool.name} on ${on_string}"/> </outputs> <help><![CDATA[ TODO: Fill in help.