Mercurial > repos > azomics > flowsom_tree
changeset 1:6c1721e7d0d6 draft
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flowsom_tree commit 6a60b44dd06df7be2eb851a5328cfc9e76c1d44e"
| author | azomics |
|---|---|
| date | Mon, 06 Jul 2020 19:50:37 -0400 |
| parents | 54a25f1139b4 |
| children | 0efc47dba930 |
| files | FlowSOMGenerateTree.xml |
| diffstat | 1 files changed, 3 insertions(+), 1 deletions(-) [+] |
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--- a/FlowSOMGenerateTree.xml Tue Jun 23 12:46:08 2020 -0400 +++ b/FlowSOMGenerateTree.xml Mon Jul 06 19:50:37 2020 -0400 @@ -1,15 +1,17 @@ -<tool id="flowsom_tree" name="Generate a reference Self Organizing Map" version="1.0+galaxy1"> +<tool id="flowsom_tree" name="Generate a reference Self Organizing Map" version="1.0+galaxy1" profile="18.01"> <description>using FlowSOM.</description> <requirements> <requirement type="package" version="1.18.0">bioconductor-flowsom</requirement> </requirements> <stdio> + <exit_code range="1:9" level="fatal" description="See stderr for more details." /> <exit_code range="10" level="fatal" description="Please provide a valid input (FCS or flowFrame)." /> <exit_code range="11" level="fatal" description="Please provide integers for columns you want to analyze, in a comma separated list." /> <exit_code range="12" level="fatal" description="Provided indices are out of range in the FCS file / flowframe given as input." /> <exit_code range="13" level="fatal" description="Please provide integers for the number of expected clusters." /> <exit_code range="14" level="fatal" description="Please provide integers for the grid size." /> <exit_code range="15" level="fatal" description="Please provide an integer to set the seed." /> + <exit_code range="16:" level="fatal" description="See stderr for more details." /> </stdio> <command><![CDATA[ Rscript $__tool_directory__/FlowSOMGenerateTree.R '${input}' '${output}' '${cols}' '${cluster}' '${xdim}' '${ydim}' '${seed}'