Mercurial > repos > azomics > flowtext_summary
view FCSstats_txt.py @ 0:2916b895840f draft default tip
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flowtext_summary commit 2a47c0c1e27462d21098006ba4fe0789b1ed37ec"
author | azomics |
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date | Mon, 22 Jun 2020 20:32:32 -0400 |
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#!/usr/bin/env python ###################################################################### # Copyright (c) 2016 Northrop Grumman. # All rights reserved. ###################################################################### from __future__ import print_function import pandas as pd from argparse import ArgumentParser def get_txt_stats(in_file, out_file): df = pd.read_table(in_file) summary = df.describe().round(1) df1 = summary[1:] x = summary[:1].values.tolist() df1.to_csv(out_file, sep="\t") with open(out_file, "a") as ot: ot.write("\n\n" + str(int(x[0][0])) + " events\n") return if __name__ == "__main__": parser = ArgumentParser( prog="getTxtStats", description="Prints summary statistics from given file.") parser.add_argument( '-i', dest="input_file", required=True, help="File location for the text file.") parser.add_argument( '-o', dest="output_file", required=True, help="Name of the output file.") args = parser.parse_args() get_txt_stats(args.input_file, args.output_file)