Mercurial > repos > azomics > flowtext_summary
view FCSstats_text.xml @ 0:2916b895840f draft default tip
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flowtext_summary commit 2a47c0c1e27462d21098006ba4fe0789b1ed37ec"
author | azomics |
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date | Mon, 22 Jun 2020 20:32:32 -0400 |
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<tool id="get_txt_fcs_stats" name="Get summary" version="1.0+galaxy1"> <description>of txt-converted FCS files</description> <requirements> <requirement type="package" version="0.17.1">pandas</requirement> </requirements> <stdio> <exit_code range="2:" level="fatal" description="See stderr for more details." /> </stdio> <command><![CDATA[ python '$__tool_directory__/FCSstats_txt.py' -i '${input}' -o '${output}' ]]> </command> <inputs> <param format="flowtext,txt,tabular" name="input" type="data" label="txt-converted FCS file"/> </inputs> <outputs> <data format="tabular" name="output" label="Summary statisitics of ${input.name}"/> </outputs> <tests> <test> <param name="input" value="input.flowtext"/> <output name="output" file="output.tabular"/> </test> </tests> <help><![CDATA[ This tool generates a summary of a txt-converted FCS file and list of markers. ----- **Input file** This tool uses txt-converted FCS files as input. **Output file** File summary includes number of events, list of markers and parameters, and summary statistics for each. ----- **Example** *Output*:: FSC SSC CD4 CCR3 CD8 CCR4 mean 475.4 413.4 288.8 157.9 218.1 179.6 std 165.2 390.7 199.9 117.3 201.7 95.7 min 261.0 18.0 0.0 0.0 0.0 0.0 25% 354.0 121.0 112.0 65.0 58.0 109.0 50% 398.0 167.0 209.0 159.0 180.0 179.0 75% 609.0 951.2 512.0 237.0 275.0 245.0 max 1023.0 1023.0 775.0 1023.0 1023.0 841.0 20000 events ]]> </help> </tool>