--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/qiime/single_rarefaction.xml	Wed Jun 06 16:40:30 2012 -0400
@@ -0,0 +1,36 @@
+<tool id="single_rarefaction" name="single_rarefaction" version="1.5.0">
+ <description>Perform rarefaction on an otu table</description>
+ <requirements>
+  <requirement type="binary">single_rarefaction.py</requirement>
+ </requirements>
+ <command interpreter="python">
+  qiime_wrapper.py
+  single_rarefaction.py
+  --input_path=$input_path
+  --output_path=$output_path
+  --depth=$depth
+  $suppress_lineages_included
+  $keep_empty_otus
+ </command>
+ <inputs>
+  <param name="input_path" type="data" format="qiimeotutable"  label="input_path"
+   help="input otu table filepath [REQUIRED]"/>
+  <param name="depth" type="integer" value="1" label="depth"
+   help="sequences per sample to subsample [REQUIRED]"/>
+  <param name="suppress_lineages_included" type="boolean" truevalue="--suppress_lineages_included" falsevalue="" checked="false" label="suppress_lineages_included"
+   help="Exclude taxonomic (lineage) information for each OTU. Note: this will only work if lineage information is in the input OTU table. [default: False]"/>
+  <param name="keep_empty_otus" type="boolean" truevalue="--keep_empty_otus" falsevalue="" checked="false" label="keep_empty_otus"
+   help="otus (rows) of all zeros are usually omitted from the output otu table, with -k they will not be removed from the output file [default: False]"/>
+ </inputs>
+ <outputs>
+  <data format_source="input_path" name="output_path" label="${tool.name} on ${on_string}: rarefaction"/>
+ </outputs>
+ <tests>
+ </tests>
+ <help>For more information, see single_rarefaction_ in the Qiime documentation.
+ 
+Qiime integration courtesy Jim Johnson, Minnesota Supercomputing Institute, University of Minnesota, Minneapolis, MN
+ 
+ .. _single_rarefaction: http://qiime.org/scripts/single_rarefaction.html</help>
+</tool>
+