#SampleID	Metaphlan2_Analysis
#clade_name	relative_abundance	coverage	average_genome_length_in_the_clade	estimated_number_of_reads_from_the_clade
k__Bacteria	93.48715	0.138259210304	3060646	423162
k__Archaea	6.51285	0.00963193275713	1717866	16546
k__Bacteria|p__Firmicutes	73.45294	0.108630391421	2645593	287392
k__Bacteria|p__Proteobacteria	19.36391	0.0286375092603	3135748	89800
k__Archaea|p__Euryarchaeota	6.51285	0.00963193275713	1954104	18822
k__Bacteria|p__Actinobacteria	0.36055	0.000533224419409	3230214	1722
k__Bacteria|p__Deinococcus_Thermus	0.30974	0.000458085203848	2916300	1336
k__Bacteria|p__Firmicutes|c__Bacilli	72.514	0.107241784241	2708875	290505
k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria	13.59711	0.0201089279307	3686133	74124
k__Archaea|p__Euryarchaeota|c__Methanobacteria	6.51285	0.00963193275713	1658190	15972
k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria	5.64659	0.00835080616008	3693177	30841
k__Bacteria|p__Firmicutes|c__Clostridia	0.93894	0.00138860718019	2874996	3992
k__Bacteria|p__Actinobacteria|c__Actinobacteria	0.36055	0.000533224419409	3230214	1722
k__Bacteria|p__Deinococcus_Thermus|c__Deinococci	0.30974	0.000458085203848	2916300	1336
k__Bacteria|p__Proteobacteria|c__Epsilonproteobacteria	0.07678	0.000113544968539	2003141	227
k__Bacteria|p__Proteobacteria|c__Betaproteobacteria	0.04343	6.42302010405e-05	3060202	197
k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales	55.38558	0.0819103700977	3407631	279120
k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales	17.12842	0.0253314141428	2010119	50919
k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacteriales	11.54704	0.017077045274	4079009	69657
k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales	6.51285	0.00963193275713	1658190	15972
k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales	5.64659	0.00835080616008	4758592	39738
k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales	2.05008	0.00303188265663	4126474	12511
k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales	0.93894	0.00138860718019	3127383	4343
k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Actinomycetales	0.36055	0.000533224419409	4860922	2592
k__Bacteria|p__Deinococcus_Thermus|c__Deinococci|o__Deinococcales	0.30974	0.000458085203848	3351957	1535
k__Bacteria|p__Proteobacteria|c__Epsilonproteobacteria|o__Campylobacterales	0.07678	0.000113544968539	2228417	253
k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Neisseriales	0.04343	6.42302010405e-05	3161861	203
k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Staphylococcaceae	55.38558	0.0819103700977	2461214	201599
k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae	17.12842	0.0253314141428	2193606	55567
k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacteriales|f__Enterobacteriaceae	11.54704	0.017077045274	4079009	69657
k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales|f__Methanobacteriaceae	6.51285	0.00963193275713	2073038	19967
k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales|f__Rhodobacteraceae	5.64659	0.00835080616008	5037498	42067
k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Pseudomonadaceae	1.92917	0.00285306704708	5434751	15506
k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales|f__Clostridiaceae	0.93894	0.00138860718019	3351243	4654
k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Actinomycetales|f__Propionibacteriaceae	0.36055	0.000533224419409	3386340	1806
k__Bacteria|p__Deinococcus_Thermus|c__Deinococci|o__Deinococcales|f__Deinococcaceae	0.30974	0.000458085203848	3443517	1577
k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae	0.12091	0.000178815609551	2818198	504
k__Bacteria|p__Proteobacteria|c__Epsilonproteobacteria|o__Campylobacterales|f__Helicobacteraceae	0.07678	0.000113544968539	2208224	251
k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Neisseriales|f__Neisseriaceae	0.04343	6.42302010405e-05	3161861	203
k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus	55.38558	0.0819103700977	2627125	215189
k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus	17.12842	0.0253314141428	2091707	52986
k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacteriales|f__Enterobacteriaceae|g__Escherichia	11.54704	0.017077045274	4803810	82035
k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales|f__Methanobacteriaceae|g__Methanobrevibacter	6.51285	0.00963193275713	2273035	21894
k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales|f__Rhodobacteraceae|g__Rhodobacter	5.64659	0.00835080616008	3846637	32123
k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Pseudomonadaceae|g__Pseudomonas	1.92917	0.00285306704708	6246362	17821
k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales|f__Clostridiaceae|g__Clostridium	0.93894	0.00138860718019	4612938	6406
k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Actinomycetales|f__Propionibacteriaceae|g__Propionibacterium	0.36055	0.000533224419409	2605315	1389
k__Bacteria|p__Deinococcus_Thermus|c__Deinococci|o__Deinococcales|f__Deinococcaceae|g__Deinococcus	0.30974	0.000458085203848	3443517	1577
k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae|g__Acinetobacter	0.12091	0.000178815609551	3719277	665
k__Bacteria|p__Proteobacteria|c__Epsilonproteobacteria|o__Campylobacterales|f__Helicobacteraceae|g__Helicobacter	0.07678	0.000113544968539	1873785	213
k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Neisseriales|f__Neisseriaceae|g__Neisseria	0.04343	6.42302010405e-05	2338593	150
k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus|s__Staphylococcus_aureus	28.27762	0.041820097544	2866570	119880
k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus|s__Staphylococcus_epidermidis	27.10796	0.0400902725537	2525605	101252
k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus|s__Streptococcus_mutans	16.30896	0.0241195042226	1908490	46032
k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacteriales|f__Enterobacteriaceae|g__Escherichia|s__Escherichia_coli	6.69956	0.00990806034098	5208306	51604
k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales|f__Methanobacteriaceae|g__Methanobrevibacter|s__Methanobrevibacter_smithii	6.51285	0.00963193275713	1883713	18144
k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales|f__Rhodobacteraceae|g__Rhodobacter|s__Rhodobacter_sphaeroides	5.64659	0.00835080616008	4259863	35573
k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacteriales|f__Enterobacteriaceae|g__Escherichia|s__Escherichia_unclassified	4.84747	0.00716898493305	4803810	34438
k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Pseudomonadaceae|g__Pseudomonas|s__Pseudomonas_unclassified	1.11583	0.00165021989547	6246362	10308
k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales|f__Clostridiaceae|g__Clostridium|s__Clostridium_beijerinckii	0.93894	0.00138860718019	5906224	8201
k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus|s__Streptococcus_agalactiae	0.81946	0.00121190992023	2093917	2538
k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Pseudomonadaceae|g__Pseudomonas|s__Pseudomonas_aeruginosa	0.81333	0.00120284715161	6695839	8054
k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Actinomycetales|f__Propionibacteriaceae|g__Propionibacterium|s__Propionibacterium_acnes	0.36055	0.000533224419409	2505029	1336
k__Bacteria|p__Deinococcus_Thermus|c__Deinococci|o__Deinococcales|f__Deinococcaceae|g__Deinococcus|s__Deinococcus_unclassified	0.15778	0.000233347738069	3443517	804
k__Bacteria|p__Deinococcus_Thermus|c__Deinococci|o__Deinococcales|f__Deinococcaceae|g__Deinococcus|s__Deinococcus_radiodurans	0.15196	0.000224737465779	3060986	688
k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae|g__Acinetobacter|s__Acinetobacter_baumannii	0.12091	0.000178815609551	3966061	709
k__Bacteria|p__Proteobacteria|c__Epsilonproteobacteria|o__Campylobacterales|f__Helicobacteraceae|g__Helicobacter|s__Helicobacter_pylori	0.07678	0.000113544968539	1635217	186
k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Neisseriales|f__Neisseriaceae|g__Neisseria|s__Neisseria_meningitidis	0.04343	6.42302010405e-05	2200434	141
k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus|s__Staphylococcus_aureus|t__Staphylococcus_aureus_unclassified	28.27762	0.041820097544	2866570	119880
k__Bacteria|p__Firmicutes|c__Bacilli|o__Bacillales|f__Staphylococcaceae|g__Staphylococcus|s__Staphylococcus_epidermidis|t__Staphylococcus_epidermidis_unclassified	27.10796	0.0400902725537	2525605	101252
k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus|s__Streptococcus_mutans|t__Streptococcus_mutans_unclassified	16.30896	0.0241195042226	1908490	46032
k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Enterobacteriales|f__Enterobacteriaceae|g__Escherichia|s__Escherichia_coli|t__Escherichia_coli_unclassified	6.69956	0.00990806034098	5208306	51604
k__Archaea|p__Euryarchaeota|c__Methanobacteria|o__Methanobacteriales|f__Methanobacteriaceae|g__Methanobrevibacter|s__Methanobrevibacter_smithii|t__Methanobrevibacter_smithii_unclassified	6.51285	0.00963193275713	1883713	18144
k__Bacteria|p__Proteobacteria|c__Alphaproteobacteria|o__Rhodobacterales|f__Rhodobacteraceae|g__Rhodobacter|s__Rhodobacter_sphaeroides|t__Rhodobacter_sphaeroides_unclassified	5.64659	0.00835080616008	4259863	35573
k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales|f__Clostridiaceae|g__Clostridium|s__Clostridium_beijerinckii|t__Clostridium_beijerinckii_unclassified	0.93894	0.00138860718019	5906224	8201
k__Bacteria|p__Firmicutes|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus|s__Streptococcus_agalactiae|t__Streptococcus_agalactiae_unclassified	0.81946	0.00121190992023	2093917	2538
k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Pseudomonadaceae|g__Pseudomonas|s__Pseudomonas_aeruginosa|t__Pseudomonas_aeruginosa_unclassified	0.81333	0.00120284715161	6695839	8054
k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Actinomycetales|f__Propionibacteriaceae|g__Propionibacterium|s__Propionibacterium_acnes|t__Propionibacterium_acnes_unclassified	0.36055	0.000533224419409	2505029	1336
k__Bacteria|p__Deinococcus_Thermus|c__Deinococci|o__Deinococcales|f__Deinococcaceae|g__Deinococcus|s__Deinococcus_radiodurans|t__GCF_000008565	0.15196	0.000224737465779	3060986	688
k__Bacteria|p__Proteobacteria|c__Gammaproteobacteria|o__Pseudomonadales|f__Moraxellaceae|g__Acinetobacter|s__Acinetobacter_baumannii|t__Acinetobacter_baumannii_unclassified	0.12091	0.000178815609551	3966061	709
k__Bacteria|p__Proteobacteria|c__Epsilonproteobacteria|o__Campylobacterales|f__Helicobacteraceae|g__Helicobacter|s__Helicobacter_pylori|t__Helicobacter_pylori_unclassified	0.07678	0.000113544968539	1635217	186
k__Bacteria|p__Proteobacteria|c__Betaproteobacteria|o__Neisseriales|f__Neisseriaceae|g__Neisseria|s__Neisseria_meningitidis|t__Neisseria_meningitidis_unclassified	0.04343	6.42302010405e-05	2200434	141
#estimated total number of reads from known clades: 439708