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| author | bebatut |
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| date | Wed, 20 Apr 2016 08:30:08 -0400 |
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# Pathway humann2_Abundance PYRIDOXSYN-PWY: pyridoxal 5'-phosphate biosynthesis I 0.0245442 PYRIDOXSYN-PWY: pyridoxal 5'-phosphate biosynthesis I|unclassified 0.0341296 PWY-3841: folate transformations II 0.0238544 PWY-3841: folate transformations II|unclassified 0.0227477 1CMET2-PWY: N10-formyl-tetrahydrofolate biosynthesis 0.0212689 1CMET2-PWY: N10-formyl-tetrahydrofolate biosynthesis|unclassified 0.00834716 PWY-7208: superpathway of pyrimidine nucleobases salvage 0.0206908 PWY-7208: superpathway of pyrimidine nucleobases salvage|unclassified 0.0175918 COA-PWY-1: coenzyme A biosynthesis II (mammalian) 0.019437 PWY-7221: guanosine ribonucleotides de novo biosynthesis 0.0188123 CALVIN-PWY: Calvin-Benson-Bassham cycle 0.0179034 CALVIN-PWY: Calvin-Benson-Bassham cycle|unclassified 0.0240344 PWY66-422: D-galactose degradation V (Leloir pathway) 0.0175745 PWY66-422: D-galactose degradation V (Leloir pathway)|g__Bacteroides.s__Bacteroides_stercoris 0.0149592 PWY66-422: D-galactose degradation V (Leloir pathway)|unclassified 0.0104266 PWY-1042: glycolysis IV (plant cytosol) 0.0175553 PWY-1042: glycolysis IV (plant cytosol)|unclassified 0.0193529 PWY-5100: pyruvate fermentation to acetate and lactate II 0.0170667 PWY-5100: pyruvate fermentation to acetate and lactate II|unclassified 0.0126625 DTDPRHAMSYN-PWY: dTDP-L-rhamnose biosynthesis I 0.0169441 DTDPRHAMSYN-PWY: dTDP-L-rhamnose biosynthesis I|unclassified 0.0250835 PWY-7228: superpathway of guanosine nucleotides de novo biosynthesis I 0.0169262 HOMOSER-METSYN-PWY: L-methionine biosynthesis I 0.0158217 HOMOSER-METSYN-PWY: L-methionine biosynthesis I|unclassified 0.0109381 PWY-7219: adenosine ribonucleotides de novo biosynthesis 0.0157923 PWY-7219: adenosine ribonucleotides de novo biosynthesis|unclassified 0.0333171 PWY-7229: superpathway of adenosine nucleotides de novo biosynthesis I 0.0155872 PWY-7229: superpathway of adenosine nucleotides de novo biosynthesis I|unclassified 0.0261337 PWY-6125: superpathway of guanosine nucleotides de novo biosynthesis II 0.0155645 PWY-5505: L-glutamate and L-glutamine biosynthesis 0.0153682 PWY-5505: L-glutamate and L-glutamine biosynthesis|unclassified 0.0196045 PWY-5505: L-glutamate and L-glutamine biosynthesis|g__Bacteroides.s__Bacteroides_thetaiotaomicron 0.0144739 PWY-6126: superpathway of adenosine nucleotides de novo biosynthesis II 0.0150984 PWY-6126: superpathway of adenosine nucleotides de novo biosynthesis II|unclassified 0.0244065 PWY-7220: adenosine deoxyribonucleotides de novo biosynthesis II 0.0148474 PWY-7220: adenosine deoxyribonucleotides de novo biosynthesis II|unclassified 0.0201368 PWY-7222: guanosine deoxyribonucleotides de novo biosynthesis II 0.0148474 PWY-7222: guanosine deoxyribonucleotides de novo biosynthesis II|unclassified 0.0201368 PWY-6703: preQ0 biosynthesis 0.0139768 PWY-6703: preQ0 biosynthesis|unclassified 0.013368 PWY-5659: GDP-mannose biosynthesis 0.013223 PWY-5659: GDP-mannose biosynthesis|unclassified 0.00106616 SER-GLYSYN-PWY: superpathway of L-serine and glycine biosynthesis I 0.012955 SER-GLYSYN-PWY: superpathway of L-serine and glycine biosynthesis I|unclassified 0.00288758 ILEUSYN-PWY: L-isoleucine biosynthesis I (from threonine) 0.0129401 ILEUSYN-PWY: L-isoleucine biosynthesis I (from threonine)|unclassified 0.0159474 VALSYN-PWY: L-valine biosynthesis 0.0129401 VALSYN-PWY: L-valine biosynthesis|unclassified 0.0159474 PWY-6936: seleno-amino acid biosynthesis 0.012799 PWY-6936: seleno-amino acid biosynthesis|unclassified 0.0132349 PWY-5030: L-histidine degradation III 0.0122713 PWY-5030: L-histidine degradation III|unclassified 0.0120381 HSERMETANA-PWY: L-methionine biosynthesis III 0.0121379 HSERMETANA-PWY: L-methionine biosynthesis III|unclassified 0.00515875 PWY0-162: superpathway of pyrimidine ribonucleotides de novo biosynthesis 0.0119161 PWY0-162: superpathway of pyrimidine ribonucleotides de novo biosynthesis|unclassified 0.00295685 PWY-4984: urea cycle 0.0118794 GLUCONEO-PWY: gluconeogenesis I 0.0118442 PWY-7400: L-arginine biosynthesis IV (archaebacteria) 0.0118235 ARGSYN-PWY: L-arginine biosynthesis I (via L-ornithine) 0.0116946 GALACTUROCAT-PWY: D-galacturonate degradation I 0.0112548 ASPASN-PWY: superpathway of L-aspartate and L-asparagine biosynthesis 0.0109751 ASPASN-PWY: superpathway of L-aspartate and L-asparagine biosynthesis|unclassified 0.0192205 PWY-5097: L-lysine biosynthesis VI 0.0104893 PWY-5097: L-lysine biosynthesis VI|unclassified 0.0116003 ANAGLYCOLYSIS-PWY: glycolysis III (from glucose) 0.0103937 ANAGLYCOLYSIS-PWY: glycolysis III (from glucose)|unclassified 0.0185171 PWY-7242: D-fructuronate degradation 0.0103935 BRANCHED-CHAIN-AA-SYN-PWY: superpathway of branched amino acid biosynthesis 0.0102856 BRANCHED-CHAIN-AA-SYN-PWY: superpathway of branched amino acid biosynthesis|unclassified 0.00857417 ARGSYNBSUB-PWY: L-arginine biosynthesis II (acetyl cycle) 0.0102161 ARGSYNBSUB-PWY: L-arginine biosynthesis II (acetyl cycle)|unclassified 0.0131054 PWY-6124: inosine-5'-phosphate biosynthesis II 0.0101549 PWY-6124: inosine-5'-phosphate biosynthesis II|unclassified 0.0222455 PWY-6507: 4-deoxy-L-threo-hex-4-enopyranuronate degradation 0.0100585 PWY-5686: UMP biosynthesis 0.00980672 PWY-5686: UMP biosynthesis|unclassified 0.017892 PWY-6151: S-adenosyl-L-methionine cycle I 0.00977587 CITRULBIO-PWY: L-citrulline biosynthesis 0.00974607 CITRULBIO-PWY: L-citrulline biosynthesis|unclassified 0.0049408 PWY-2942: L-lysine biosynthesis III 0.00959218 PWY-2942: L-lysine biosynthesis III|unclassified 0.0110762 TRNA-CHARGING-PWY: tRNA charging 0.00946058 TRNA-CHARGING-PWY: tRNA charging|unclassified 0.00526713 PWY66-400: glycolysis VI (metazoan) 0.00938218 PWY66-400: glycolysis VI (metazoan)|unclassified 0.00933907 PWY-5154: L-arginine biosynthesis III (via N-acetyl-L-citrulline) 0.00881081 ANAEROFRUCAT-PWY: homolactic fermentation 0.0088 ANAEROFRUCAT-PWY: homolactic fermentation|unclassified 0.0157977 PWY-7111: pyruvate fermentation to isobutanol (engineered) 0.00876945 PWY-7111: pyruvate fermentation to isobutanol (engineered)|unclassified 0.0173067 NONOXIPENT-PWY: pentose phosphate pathway (non-oxidative branch) 0.00862082 NONOXIPENT-PWY: pentose phosphate pathway (non-oxidative branch)|unclassified 0.018885 PEPTIDOGLYCANSYN-PWY: peptidoglycan biosynthesis I (meso-diaminopimelate containing) 0.00850699 PEPTIDOGLYCANSYN-PWY: peptidoglycan biosynthesis I (meso-diaminopimelate containing)|unclassified 0.0116221 GLUCUROCAT-PWY: superpathway of β-D-glucuronide and D-glucuronate degradation 0.00838546 PWY-6123: inosine-5'-phosphate biosynthesis I 0.00831965 PWY-6123: inosine-5'-phosphate biosynthesis I|unclassified 0.0182252 PWY-5103: L-isoleucine biosynthesis III 0.00831677 PWY-5103: L-isoleucine biosynthesis III|unclassified 0.00718443 PWY-5104: L-isoleucine biosynthesis IV 0.00831272 PWY-5104: L-isoleucine biosynthesis IV|unclassified 0.0065428 PWY-6385: peptidoglycan biosynthesis III (mycobacteria) 0.00820786 PWY-6385: peptidoglycan biosynthesis III (mycobacteria)|unclassified 0.00930133 ARGININE-SYN4-PWY: L-ornithine de novo biosynthesis 0.00809135 ARGININE-SYN4-PWY: L-ornithine de novo biosynthesis|unclassified 0.0166731 GLUTORN-PWY: L-ornithine biosynthesis 0.00808734 GLUTORN-PWY: L-ornithine biosynthesis|unclassified 0.00900908 PWY-7184: pyrimidine deoxyribonucleotides de novo biosynthesis I 0.00770993 GLYCOLYSIS: glycolysis I (from glucose 6-phosphate) 0.00769956 GLYCOLYSIS: glycolysis I (from glucose 6-phosphate)|unclassified 0.0137456 PWY-1269: CMP-3-deoxy-D-manno-octulosonate biosynthesis I 0.00755658 PWY-1269: CMP-3-deoxy-D-manno-octulosonate biosynthesis I|unclassified 0.00644897 PWY-5484: glycolysis II (from fructose 6-phosphate) 0.00749543 PWY-5484: glycolysis II (from fructose 6-phosphate)|unclassified 0.0134471 FASYN-INITIAL-PWY: superpathway of fatty acid biosynthesis initiation (E. coli) 0.00744755 FASYN-INITIAL-PWY: superpathway of fatty acid biosynthesis initiation (E. coli)|unclassified 0.00788309 PWY-6387: UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing) 0.00731247 PWY-6387: UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing)|unclassified 0.00973219 PWY66-389: phytol degradation 0.00548391 PWY66-389: phytol degradation|unclassified 0.00638472 PWY-7316: dTDP-N-acetylviosamine biosynthesis 0.00542069 PWY-7316: dTDP-N-acetylviosamine biosynthesis|unclassified 0.0110149 RHAMCAT-PWY: L-rhamnose degradation I 0.00539026 PWY-841: superpathway of purine nucleotides de novo biosynthesis I 0.00531622 PWY-7237: myo-, chiro- and scillo-inositol degradation 0.00520322 PWY-7237: myo-, chiro- and scillo-inositol degradation|unclassified 0.0113983 HISDEG-PWY: L-histidine degradation I 0.00519408 HISDEG-PWY: L-histidine degradation I|unclassified 0.00770332 PWY4FS-7: phosphatidylglycerol biosynthesis I (plastidic) 0.00518363 PWY4FS-8: phosphatidylglycerol biosynthesis II (non-plastidic) 0.00518363 PWY-6549: L-glutamine biosynthesis III 0.00508899 PWY-6549: L-glutamine biosynthesis III|unclassified 0.00776607 PWY-5101: L-isoleucine biosynthesis II 0.00492461 PWY-5101: L-isoleucine biosynthesis II|unclassified 0.00617859 PWY-6628: superpathway of L-phenylalanine biosynthesis 0.0049241 PHOSLIPSYN-PWY: superpathway of phospholipid biosynthesis I (bacteria) 0.00460395 COMPLETE-ARO-PWY: superpathway of aromatic amino acid biosynthesis 0.00439273 COMPLETE-ARO-PWY: superpathway of aromatic amino acid biosynthesis|unclassified 0.00862669 PWY-6897: thiamin salvage II 0.00415143 PWY-6897: thiamin salvage II|unclassified 0.00909424 PWY-7357: thiamin formation from pyrithiamine and oxythiamine (yeast) 0.0041402 PWY-7357: thiamin formation from pyrithiamine and oxythiamine (yeast)|unclassified 0.00906963 PWY-6163: chorismate biosynthesis from 3-dehydroquinate 0.00410329 PWY-6163: chorismate biosynthesis from 3-dehydroquinate|unclassified 0.00781711 PWY-7388: octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) 0.00409733 PWY-7388: octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)|unclassified 0.00641891 ARO-PWY: chorismate biosynthesis I 0.0039449 ARO-PWY: chorismate biosynthesis I|unclassified 0.00783533 GALACT-GLUCUROCAT-PWY: superpathway of hexuronide and hexuronate degradation 0.00391566 PWY-5667: CDP-diacylglycerol biosynthesis I 0.00384585 PWY-5667: CDP-diacylglycerol biosynthesis I|unclassified 0.00149856 PWY0-1319: CDP-diacylglycerol biosynthesis II 0.00384585 PWY0-1319: CDP-diacylglycerol biosynthesis II|unclassified 0.00149856 PYRIDNUCSYN-PWY: NAD biosynthesis I (from aspartate) 0.00361602 PYRIDNUCSYN-PWY: NAD biosynthesis I (from aspartate)|unclassified 0.0068348 PWY-6527: stachyose degradation 0.00354951 PWY-6527: stachyose degradation|unclassified 0.00683934 DAPLYSINESYN-PWY: L-lysine biosynthesis I 0.0035429 DAPLYSINESYN-PWY: L-lysine biosynthesis I|unclassified 0.00314147 UDPNAGSYN-PWY: UDP-N-acetyl-D-glucosamine biosynthesis I 0.00338583 UDPNAGSYN-PWY: UDP-N-acetyl-D-glucosamine biosynthesis I|unclassified 0.00656183 PWY-6305: putrescine biosynthesis IV 0.00333385 PWY-5690: TCA cycle II (plants and fungi) 0.00322218 PWY-5690: TCA cycle II (plants and fungi)|unclassified 0.00358601 OANTIGEN-PWY: O-antigen building blocks biosynthesis (E. coli) 0.00321981 OANTIGEN-PWY: O-antigen building blocks biosynthesis (E. coli)|unclassified 0.00620846 PWY-6630: superpathway of L-tyrosine biosynthesis 0.00319673 P105-PWY: TCA cycle IV (2-oxoglutarate decarboxylase) 0.00262013 P105-PWY: TCA cycle IV (2-oxoglutarate decarboxylase)|unclassified 0.00340536 PWY-6121: 5-aminoimidazole ribonucleotide biosynthesis I 0.00258418 PWY-6121: 5-aminoimidazole ribonucleotide biosynthesis I|unclassified 0.00566097 PWY-7211: superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis 0.00250236 PWY-6122: 5-aminoimidazole ribonucleotide biosynthesis II 0.00237867 PWY-6122: 5-aminoimidazole ribonucleotide biosynthesis II|unclassified 0.00521078 PWY-6277: superpathway of 5-aminoimidazole ribonucleotide biosynthesis 0.00237867 PWY-6277: superpathway of 5-aminoimidazole ribonucleotide biosynthesis|unclassified 0.00521078 METHGLYUT-PWY: superpathway of methylglyoxal degradation 0.00226728 METHGLYUT-PWY: superpathway of methylglyoxal degradation|unclassified 0.00496676 PWY0-1061: superpathway of L-alanine biosynthesis 0.00216957 PWY0-1061: superpathway of L-alanine biosynthesis|unclassified 0.00374653 PPGPPMET-PWY: ppGpp biosynthesis 0.00203621 PWY-6737: starch degradation V 0.00201137 PWY-6737: starch degradation V|unclassified 0.00316335 PWY-7115: C4 photosynthetic carbon assimilation cycle, NAD-ME type 0.00187881 P441-PWY: superpathway of N-acetylneuraminate degradation 0.00162577 P441-PWY: superpathway of N-acetylneuraminate degradation|unclassified 0.00204428 PWY-5855: ubiquinol-7 biosynthesis (prokaryotic) 0.0015637 PWY-5855: ubiquinol-7 biosynthesis (prokaryotic)|unclassified 0.00342548 PWY-5857: ubiquinol-10 biosynthesis (prokaryotic) 0.0015637 PWY-5857: ubiquinol-10 biosynthesis (prokaryotic)|unclassified 0.00342548 PWY4LZ-257: superpathway of fermentation (Chlamydomonas reinhardtii) 0.00147873 PWY4LZ-257: superpathway of fermentation (Chlamydomonas reinhardtii)|unclassified 0.00318099 DENOVOPURINE2-PWY: superpathway of purine nucleotides de novo biosynthesis II 0.0014462 PWY-724: superpathway of L-lysine, L-threonine and L-methionine biosynthesis II 0.00142842 PWY-724: superpathway of L-lysine, L-threonine and L-methionine biosynthesis II|unclassified 0.0029625 PWY-3001: superpathway of L-isoleucine biosynthesis I 0.00142024 PWY-3001: superpathway of L-isoleucine biosynthesis I|unclassified 0.0027671 KETOGLUCONMET-PWY: ketogluconate metabolism 0.00141222 KETOGLUCONMET-PWY: ketogluconate metabolism|unclassified 0.00309365 PWY-5941: glycogen degradation II (eukaryotic) 0.00127166 PWY-5941: glycogen degradation II (eukaryotic)|unclassified 0.00241599 PWY-6435: 4-hydroxybenzoate biosynthesis V 0.00125364 PWY-6435: 4-hydroxybenzoate biosynthesis V|unclassified 0.00274625 P161-PWY: acetylene degradation 0.00119177 P161-PWY: acetylene degradation|unclassified 0.00261072 RIBOSYN2-PWY: flavin biosynthesis I (bacteria and plants) 0.0011474 RIBOSYN2-PWY: flavin biosynthesis I (bacteria and plants)|unclassified 0.00213182 PWY-6606: guanosine nucleotides degradation II 0.00113088 PWY-6606: guanosine nucleotides degradation II|unclassified 0.00247734 PWY-5265: peptidoglycan biosynthesis II (staphylococci) 0.00106882 PWY-5265: peptidoglycan biosynthesis II (staphylococci)|unclassified 0.00209837 PWY-5754: 4-hydroxybenzoate biosynthesis I (eukaryotes) 0.00104748 PWY-5754: 4-hydroxybenzoate biosynthesis I (eukaryotes)|unclassified 0.00229464 P185-PWY: formaldehyde assimilation III (dihydroxyacetone cycle) 0.00103843 P185-PWY: formaldehyde assimilation III (dihydroxyacetone cycle)|unclassified 0.00115303 PWY-6595: superpathway of guanosine nucleotides degradation (plants) 0.00102956 PWY-6595: superpathway of guanosine nucleotides degradation (plants)|unclassified 0.00225538 PWY-5464: superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle 0.000992505 PWY-5464: superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle|unclassified 0.00172005 THISYNARA-PWY: superpathway of thiamin diphosphate biosynthesis III (eukaryotes) 0.000973654 THISYNARA-PWY: superpathway of thiamin diphosphate biosynthesis III (eukaryotes)|unclassified 0.0021303 PWY-6386: UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing) 0.000904748 PWY-6386: UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)|unclassified 0.00183333 THRESYN-PWY: superpathway of L-threonine biosynthesis 0.000904039 THRESYN-PWY: superpathway of L-threonine biosynthesis|unclassified 0.00188356 PWY0-1586: peptidoglycan maturation (meso-diaminopimelate containing) 0.000751931 PWY0-1586: peptidoglycan maturation (meso-diaminopimelate containing)|unclassified 0.0014413 FAO-PWY: fatty acid β-oxidation I 0.000714249 FAO-PWY: fatty acid β-oxidation I|unclassified 0.00148771 PWY-5136: fatty acid β-oxidation II (peroxisome) 0.000698245 PWY-5136: fatty acid β-oxidation II (peroxisome)|unclassified 0.00144209 PWY-6471: peptidoglycan biosynthesis IV (Enterococcus faecium) 0.000698193 PWY-6471: peptidoglycan biosynthesis IV (Enterococcus faecium)|unclassified 0.00142191 PWY-7007: methyl ketone biosynthesis 0.000659038 PWY-7007: methyl ketone biosynthesis|unclassified 0.00122854 GLCMANNANAUT-PWY: superpathway of N-acetylglucosamine, N-acetylmannosamine and N-acetylneuraminate degradation 0.000651572 GLCMANNANAUT-PWY: superpathway of N-acetylglucosamine, N-acetylmannosamine and N-acetylneuraminate degradation|unclassified 0.00123299 PWY-6769: rhamnogalacturonan type I degradation I (fungi) 0.000634893 PWY-6769: rhamnogalacturonan type I degradation I (fungi)|unclassified 0.00139081 PWY-6309: L-tryptophan degradation XI (mammalian, via kynurenine) 0.000615914 PWY-6309: L-tryptophan degradation XI (mammalian, via kynurenine)|unclassified 0.00134924 PWY-7094: fatty acid salvage 0.000597229 PWY-7094: fatty acid salvage|unclassified 0.00125407 GLUDEG-I-PWY: GABA shunt 0.000537709 GLUDEG-I-PWY: GABA shunt|unclassified 0.001173 PWY1F-823: leucopelargonidin and leucocyanidin biosynthesis 0.000501896 PWY1F-823: leucopelargonidin and leucocyanidin biosynthesis|unclassified 0.00109947 PWY-7234: inosine-5'-phosphate biosynthesis III 0.00045368 PWY-7234: inosine-5'-phosphate biosynthesis III|unclassified 0.000993843 PWY-5173: superpathway of acetyl-CoA biosynthesis 0.000372086 PWY-5173: superpathway of acetyl-CoA biosynthesis|unclassified 0.000785602 PWY-6731: starch degradation III 0.000336222 PWY-6731: starch degradation III|unclassified 0.000708616 P241-PWY: coenzyme B biosynthesis 0.000322755 P241-PWY: coenzyme B biosynthesis|unclassified 0.000707035 PWY-7398: coumarins biosynthesis (engineered) 0.000273932 PWY-7398: coumarins biosynthesis (engineered)|unclassified 0.000600083 PWY-4041: γ-glutamyl cycle 0.000269421 PWY-4041: γ-glutamyl cycle|unclassified 0.000590201 GLYOXYLATE-BYPASS: glyoxylate cycle 0.000182141 GLYOXYLATE-BYPASS: glyoxylate cycle|unclassified 0.000395503 GLYCOL-GLYOXDEG-PWY: superpathway of glycol metabolism and degradation 0.000175574 GLYCOL-GLYOXDEG-PWY: superpathway of glycol metabolism and degradation|unclassified 0.000384618 SO4ASSIM-PWY: sulfate reduction I (assimilatory) 6.96955e-05 SO4ASSIM-PWY: sulfate reduction I (assimilatory)|unclassified 0.00015138