Mercurial > repos > bebatut > convert_extract_sequence_file

comparison test-data/input_sequence_file.fasta @ 0:01c2b74b3a21 draft

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planemo upload commit 23ef4b1699065b4f6200c58328bfecfb33dd7fd1-dirty
author bebatut
date Tue, 26 Apr 2016 08:18:18 -0400
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-1:000000000000 0:01c2b74b3a21
1 >HWI-M00234:263:000000000-ADM55:1:1101:21704:2233 1:N:0:ATCACG
2 GTGTACAAGGCCCGGGAACGTATTCACCGCGGCATGCTGATCCGCGATTACTAGCGATTC
3 CAACTTCATACAGGCGGGTTTCAGCC
4 >HWI-M00234:263:000000000-ADM55:1:1101:21334:2699 1:N:0:ATCACG
5 CTTTTGACGGCCTTTTTGTTGTCTTCTGAATTTTGTTTTTTTCGGTTGTAACATAATTCC
6 TAAAAATCAAATTCGTTAGCGATTATTTTTCTTTCTTTTGAAGTTCTTTCCGCCATTGTT
7 TCCGCTATTGCTTCCACGACC
8 >HWI-M00234:263:000000000-ADM55:1:1101:13968:2885 1:N:0:ATCACG
9 CCCACTGCTGCCTCCCGTAGGAGCCTGGACCGTGTCTCAGTTCCAATGTGGCCGATCACC
10 CTCTCAGGTCGGCTACCCATCGTTGCCCTGGTAAGCCATTACCCTACCAACTAGCTAATG
11 GGACGCGGGCACATCTCAAAGCGGATTACCCCTTTGGTTAAAGTTTAATGCGAAACTCTA
12 ACTTTATGCGTTATTAACCCTCCTTTCGGAGGGCTATTCCCCTCTTTGATGCAGGTTGCC
13 CACGTGTTACTCACCCGTCCGCCGCTAATCCACTTCCCGAAGGCAGATTCAACCCTCGAT
14 >HWI-M00234:263:000000000-ADM55:1:1101:11873:2948 1:N:0:ATCACG
15 CCCCGTTACATCTTCCGCGCAGGAAGACTCGATCAGTGAGCTATTACGCTTTCTTTGAAG
16 GATGGCTGCTTCTAAGCCAACTTCCTGACTGTCTTAGCCTTCCCACTTCGTTTTCCACTT
17 AGTCAATATTAGGGACCTTAGCCGGCGGTCTGGGTTGTTTCCCTCTTGAGTCCGGACGTT
18 AGCACCCGGTGCTCTGTCCCCCGTGCCCAAACTTCCAAGTATTCGGAGTTTGCCATGGTT
19 TGGTAAGACGCTATGTCCCCCTAACCATAACAGTGTTCTACCCTCTGAACACATACTCGA
20 >HWI-M00234:263:000000000-ADM55:1:1101:7855:3066 1:N:0:ATCACG
21 CGTCAATCTTCCAACGCCCACGGCAGATAGGGACAAAACTGTCTCACGACGTTTTAAACC
22 CAGCTCACGTACCTCTTTAAATGGCGAACAGCCATACCCTTGGGACCGGCTACAGC
23 >HWI-M00234:263:000000000-ADM55:1:1101:24817:3238 1:N:0:ATCACG
24 CCCGTGACCAGATTCATGGCCGCCGGTTAGAACCCCAGTACTGTCAGGGTGGTATCCCAA
25 GGA
26 >HWI-M00234:263:000000000-ADM55:1:1101:17179:3527 1:N:0:ATCACG
27 GTGCTTATTTCACTTCCTCAAAATCAGCATCCTGCACATTATCGCCATGCTTT
28 >HWI-M00234:263:000000000-ADM55:1:1101:21254:3571 1:N:0:ATCACG
29 GTCGCGGGGAAGATCAACTCCTGCAATTCGAGCCATACCAATTACCTCCTAGCGCCCTGA
30 CGCTGTTTATGACGAGGATCGCGGCTGCAGATGACGCGAATGACGCCATTGCGCTTGATC
31 ACTCGGCAATACTCACAAATGGGTTTAACAGATTATCTAACCTTCATAGTTTGCACACTC
32 CTCATGGACATTCC
33 >HWI-M00234:263:000000000-ADM55:1:1101:16569:3709 1:N:0:ATCACG
34 CCCGTCAATTCCTTTGAGTTTCATTCTTGCGAACGTACTCCCCAGGTGGAATACTTATTG
35 CGTTTGCTGCGGCACCGAATGGCTTTGCCACCCGACACCTAGTATTCATCGTTTACGGCG
36 TGGACTACCAGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGAGCCTCAACGTCAGGA
37 TCGGAAGAGCACACGTCTGAACTCCAGTCACATCCCG
38 >HWI-M00234:263:000000000-ADM55:1:1101:22403:3828 1:N:0:ATCACG
39 CCCGGACATCTTCGGCGCAGGATCTCTTGACTAGTGAGCTATTACGCACTCTTTAAATGA
40 GTGGCTGCTTCTAAGCCAACATCCTAGTTGTCTTAGAAATCCCACATCCTTTTCCACTTA
41 ACTTACACTTTGGGACCTTAGCTGATGAGATCGGAAGAGCACACGTCTGAACTCCAGTCA
42 CATCACGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAAATATCAATCAAACACAC
43 ACACACCAGCTTAC
44 >HWI-M00234:263:000000000-ADM55:1:1101:7508:4067 1:N:0:ATCACG
45 GGTGCACTAGGATCGTAGTTGGCTACTTTCCCGTTTTCAATGTATACGCAAGGTACACGG
46 TCAGCGGTAGCTGCCATAATGTAATGGTAGTCAAATCCTAAGTCTCCCAATGCACATGGC
47 AGTGGAGCGTTCCAATCTTGTGTACCGGCTTTGTCTCCTAATCCCAAGTGCCATTTTCCG
48 ATAGCTCCGGTAGCATAACCGGTACTTTTGAACATAACCGCCATGGTATATTGTTCGGGA
49 CGGATAATCATTCCGGCATTTCCGGCAGCTACG
50 >HWI-M00234:263:000000000-ADM55:1:1101:26232:4161 1:N:0:ATCACG
51 CTCTTCTTAAGCTCGAACAGCTTCTTCAGTCTTACCTGCCATTTCATCTAAAATTTTTAA
52 AGCTCGCTCTAAAACAGTAGTATCATCAATCATAACCAATCCACCATCTGGTCCAGGTTC
53 CAAGTGAATCCCAACACTTTTCCCCTCCTTAAAATTGTGTCCACCGAAAAAATTTCTTAC
54 AGTGTCAACATTCAGTCCAAGTTCATCGGCTATTCTATGCATACTACCACTAGGCAATGA
55 GT
56 >HWI-M00234:263:000000000-ADM55:1:1101:23151:4189 1:N:0:ATCACG
57 GCGGATTTTCTCGGGAGTATGATTACCCACACTATTGGATTCTTCCGAAGAAGACTCCAT
58 ACTACCAAGTTCAGCTCGGATGGTGGATTTGCCTGCCAAGATCAGAAGAGCACACGTCTG
59 AACTCCAGTCACATCACGACTTCGTATGCCGTATTCTGCTTGAAAAAAACAATGAAAACT
60 AGTCACCGATGACTCACGTTCGCTGAACATTATCTGACAACTAGCTTAACAATGGACATG
61 CTTAGCACTGACAACCAGACG
62 >HWI-M00234:263:000000000-ADM55:1:1101:17148:4803 1:N:0:ATCACG
63 CCCTTTTCGGCAATGGCGATGTTACGGTACATAAGAGCGATTTCGGGGAAACCTTCTTCG
64 TCTGCAATATCAGCAAACTTAGGATAATCCAATGA
65 >HWI-M00234:263:000000000-ADM55:1:1101:8939:4808 1:N:0:ATCACG
66 CCACAGTTCTGTCATATCGCAGTACAGGAATCTCAACCTGTTGTCCATCGGCTACGGCTC
67 TCGCCCTCGCCTTAGGCCCCGACTTACCCAGGGCAGATCAGCTTTA
68 >HWI-M00234:263:000000000-ADM55:1:1101:11727:5103 1:N:0:ATCACG
69 CTCCCGTATAGGATGGATCGAAAGCAATCGTCAGGAATCCACGTTCTGCCAATGTCTGCG
70 CATACAAGCCCGAAGCTTGTTCCTTCACGGCACCAAATGGGCCACTGATGGCAATGGCAG
71 GCAATTTACCCGTCACATTCTTGGGTACATACAAATCGGCGGCAAGTGTAATGCCGTAAC
72 GGTTGTGGAAAG
73 >HWI-M00234:263:000000000-ADM55:1:1101:15029:5173 1:N:0:ATCACG
74 GGCCTATTCTCTGCGGCCGCCTTTCGGCGGCACCCCTTCTCCCGAAGTTACGGGGTCATT
75 TTGCCGAGTTCCTTAACAATGCTTCTTCCGTCGGCCTTAGGATTCTCTCCTCATCCACCT
76 GTGTCGGTTTACGGTACGGGTACAATATAAACAATAGCGGCTTTTCTTGACGGCCGGCTC
77 ATGGGCTTCCCTACTTTAGT
78 >HWI-M00234:263:000000000-ADM55:1:1101:7330:5248 1:N:0:ATCACG
79 TGTGTATGAATGAGCGGCTACAGGCTTAGTCGATTTCTTTACTGCGCAGAAGCGGGACTG
80 TGACCGACAAAACAGCCGTCGCCTCTCTACGTTCCGGGACCATACGCCGCTCGCAGTGAT
81 TGACCCTTACAACCTTGCGGGCGCTCTC
82 >HWI-M00234:263:000000000-ADM55:1:1101:18630:5353 1:N:0:ATCACG
83 GGCGTGTTCTGCCAAAATAGTGCTGGGCAATATACGACATAGAAGCGAAAGGCAATACTT
84 TTTCTAAGGCCTGCCTGATTTCTACTGTTTTCACAATGGCTTGGGCTTCATTGATTGATT
85 GCCTGGCACCATCTTGGAATGCTTGCGCAAACGCTTTTTTATCCTCCGGTGAAAGCGTCT
86 GCAGAAAAGCCCTGAAACGTTTTTTATGGTCGGCCACTTCCTCAGGAGTATTG
87 >HWI-M00234:263:000000000-ADM55:1:1101:11799:5476 1:N:0:ATCACG
88 CCTAAATTTTCGAGTATAAGCAGGACCGAAGCCACCAACTTATACCTTATCCTCTAAATT
89 TTCGTAAGAGACATGAAGCGGATCTCTAACTATTCCCGATTTTACTGCACCACTTGATCA
90 AACGCTTCGGAACAAGAGCTTTTGAGTGATGTCTCGTTTCCACCACTTTGGCAGAAATAA
91 AGCTAATCTACTATGATTCGATTAAGCAGCAAGAGCATAATTTTCGTTGCCAGATAAAAT
92 TT
93 >HWI-M00234:263:000000000-ADM55:1:1101:11348:5668 1:N:0:ATCACG
94 GCCTAAATTTTCGTGCAGCGGCAGAACCAAAGCCATCAACCGTTGCCTTATCCTCTAAAT
95 TTTCACCCGCGCCACGAGGCTGACACGAACTATCCCCGATTTGACTGCACCACTTTATCG
96 GAATGCTTCGGAGCAACAGCTTCCGAGTGATGTCACGTCCCAGCACCTGGTGCCGGGATT
97 AAGCTTCAATCTACTATACTTCGATTAAGCAGCGAGAGCGTAACGAGTTTCGCCAGATAA
98 AATTTTGAGGACTGAGATTAAAGTGAAAATC
99 >HWI-M00234:263:000000000-ADM55:1:1101:25874:5826 1:N:0:ATCACG
100 CCTGCAGTGGATAGGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACCTCT
101 TTAATGGGCGAACAGCCCAACCCTTGGGACCTTCTCCAGCCCCAGGATGAGATGAGCCGA
102 CATCGAGGTGCCAAACTTTCCCGCCGATATGGACGCCCGGGCAAAATCAGCTTGTTATCC
103 CCAGGGTAGCTTTTATCCGTTGAGCGACGACCCTTCCATTCGGAATCGCCGGAATACTAT
104 GCCCTGCTTTCGCACCTGCCCAACCAGTCCGCCCAGCAGTTAAG
105 >HWI-M00234:263:000000000-ADM55:1:1101:26932:5861 1:N:0:ATCACG
106 AGCGTCAGTTACAGTCCAGAAAGCCGCCTTCGCCACTGGTGTTCTTCCTAATCTCTACGC
107 ATTTCACCGCTACACTAGGAATTCCGCTTTCCTCTCCTGCACTCTAGATATCCAGTTTGG
108 AATGCAGCCCCCAGGTTAAGCCCGGGGATTTCACATCCCACTTAAACATCCGCCTACGCA
109 CCCTTTACCACCAGTAAATCCGGACAACGCTCGCCACCTACGTATTACCGCGGCTGCTGG
110 CACGTAGTTAGCCGTGGCTTCCTCCTCTGGTACCTTCATTATCGTCCCCGAAACC
111 >HWI-M00234:263:000000000-ADM55:1:1101:14154:5990 1:N:0:ATCACG
112 GTGGGATGTCAAGGTAAGCGGCGGCAGCCTTGGCTACAGCAAGAGATACGCCGAGGATGG
113 CATTGGCACCCAGATTGGCTTTCGTTTTGGTTCCGTCCAGTGCAAGCATGGCATGGTCGA
114 TACCCATCTGGTCGAGGGCGGACATACCGATGAGCTTGGGAGCAATGATATTATTGATAT
115 TGTCCACGGCTTTCAGGAC
116 >HWI-M00234:263:000000000-ADM55:1:1101:25022:6229 1:N:0:ATCACG
117 CCCGAGAACGTATTCACCGCAACATTGCTGATTTGCGATTACTAGTGATTCCAACTTCAT
118 GTACTCGAGTTGCAGAGTACAATCCGAACTACGAACAGCTTTCTGAGGTTTGCTCCTCCT
119 CGCAGATTTGCTGATCGGAAGAGCACACGTCTGAACTCCAGTCACATC
120 >HWI-M00234:263:000000000-ADM55:1:1101:21023:6286 1:N:0:ATCACG
121 GTGTACAAGGCCCGGGAACGTATTCACCGCGCCGTGGCTGATGCGCGATTACTAGCGAAT
122 CCAGCTTCATGGAGTCGGGTTGCAGACTCCAATCCGAACTGAGAGAGGCTTTAGGGATTA
123 GCATCACGTCGCCGTGTAGCTGCCTTCTGTACCCCCCATTGTAACACGTGTGTAGCCCCG
124 GACGTAAGGGCCGTGCTGATTTGCCGTCATCCCCACCTTCCTCAC
125 >HWI-M00234:263:000000000-ADM55:1:1101:8138:6336 1:N:0:ATCACG
126 TGTGTACAAGGCCCGGGAACGTATTCACCGCGACATTCTGATTCGCGATTACTAGCAACT
127 CCAGCTTCATGTAGGCGAGTTGCAGCCTACAATCCGAACTGAGATAGGTTTTATAAGTTT
128 TGCTCCACCTCACGGTCTT
129 >HWI-M00234:263:000000000-ADM55:1:1101:11055:6543 1:N:0:ATCACG
130 CCTGGACATTTTCGGCGCAGGACCTCCCGACCAGTGAGCTATTACGCACTCTTTGACTGT
131 GTGGCTGCTTCTGAGCCAACATCCTGGTTGACTTTGAAATCTCACATACTTTTCCACTTA
132 ACACGCACTTTGGGACCTTAGCTGGAGGTCTTGGCTCTTTCCTTTTTGCCTATCCAACTT
133 ATCTCGTATAGTCTGACTCCCGG
134 >HWI-M00234:263:000000000-ADM55:1:1101:24980:6575 1:N:0:ATCACG
135 GCCATTTATCTACGCCTGTTGTCACCAACAGGCTCTAGCGGTCTACCCTCCGACGTGGGG
136 CGAGCAACCCTCATA
137 >HWI-M00234:263:000000000-ADM55:1:1101:7596:6682 1:N:0:ATCACG
138 GCCCCCGTCAATTCCTTTGAGTTTCACCGTTGCCGGCGTACTCCCCAGGTGGAATACTTA
139 ACGCTTTCGCTTGGCGGCTGACAATGTATCGCCAACCGCGAGTATTCATCAGATCGGAAG
140 AGCACACGTCTGAACTCCAGTCACATCCCGATCTCGTATGCCGTCCTCGGCTTGAAAAAA
141 AAAAATATAAACCATGATGAATTTCGAACACTCACGACCACACACTAAGCGTCGACGTA
142 >HWI-M00234:263:000000000-ADM55:1:1101:24419:6736 1:N:0:ATCACG
143 CGGGCGTTGGCAAGTACGTTATATCACTTACCCACGCTCGATTCAGAACCCCAGGAGTAA
144 ATGCTCGTTTTAAGAGGTTGGGATACACAGGCATGGTGTGATTACTGTCGGTGGTTTTTA
145 CGGTTCGCTTAAAAAAGCGGTAACCAATGATGCCATTAAAGCGAAGGATAGCGCGTAAAC
146 GTTTGACACCAACTTTCACTCCACGGTGTTGCATCAAAGC
147 >HWI-M00234:263:000000000-ADM55:1:1101:5068:6755 1:N:0:ATCACG
148 GCAGCGGCAGAACCAAAGCCATCAACCGTTGCCTTATCCTCTAAATTTTCACCCGCGCCA
149 CGAGGCTGACACGAACTATCCCCGATTTGACTGCACCACTTTATCGGAATGCTTCGGAGC
150 AACAGCTTCCGAGTGATGTCACGTCCCAGCACCTGGTGCCGGGATTAAGCTTCAATCTAC
151 TATACTTCGATTAAGCAGCGAGAGCGTAACGAGTTTCGCCAGATAAAATTTTGAGGACTG
152 AGATTAAAGTGCAAATC
153 >HWI-M00234:263:000000000-ADM55:1:1101:21477:6796 1:N:0:ATCACG
154 CCCCACTGCTGCTTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTT
155 CCTCTCAGAACCCCTATCCATCGTTGACTAGGTGGGCCGTTACCCCGCCTACTATCTAAT
156 GGAACGCATCCCCATCGTCTACCGGAAAATACCTT
157 >HWI-M00234:263:000000000-ADM55:1:1101:12483:6880 1:N:0:ATCACG
158 CTCCTTGTCTGCCTTCGATTACGGCATTTGCAATCGTTCCTGTAAGTAGTTTTACAGCTC
159 TAATGGCATCGTCATTCCCTGGTATTACGTAGTCTATTTCATCAGGATCACAGTTAGTAT
160 CAACTATTGCTACAACTGGTATTCCTAATATCTTCGCTTCATTTACTGCAATTCTTTCTT
161 TTCTTGGATCTACAACAAATAATACATCAGGAAGACCACCCATATCTTGAATGCCACCTA
162 AAAACTTTTCAA
163 >HWI-M00234:263:000000000-ADM55:1:1101:27958:6935 1:N:0:ATCACG
164 CCATTCGGAAATCCGCGGATCAAAGGTCATTTGCACCTACCCGCAGCTTATCGCAGCTTA
165 TCACGTCCTTCATCGCCTCCGAGAGCCAAGAGATCGGAAGAGCACACGTCTGAACTCCAG
166 TCACATCACGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAACCCACAAATTCACACT
167 ACACACCCACCTCCCATCACGCATCTCTTTTGTCCGAGTCACGCTGCACGCTACCTGCAC
168 ACTACCTGCCTCAGTTACATCTTTTTACTCAATGTCCCACCATTTATCAC
169 >HWI-M00234:263:000000000-ADM55:1:1101:6151:7404 1:N:0:ATCACG
170 GCACGTAGTTAGCCGGGGCTTCCTCCTAAGGTACCGTCATTATCGTCCCTTAGGACAGAG
171 CTTTACGATCCGAAAACCTTCATCGCTCACGCGGCGTCGCTGCATCAGAGTTCCCTCCAT
172 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG
173 TGGCCGTTCACCCTCCCAGGCCGGCTACCCATCGTCGCCTTGGTTAGCTATTACCTCCCC
174 AACTAGCTAATGGGACGCGAGTCCAGCTTATACCACTTAACCGCTTTTGCTTGAAAATCA