Mercurial > repos > bebatut > extract_min_max_lines
diff extract_min_max_lines.xml @ 0:90fc00b34716 draft default tip
planemo upload for repository https://github.com/asaim/galaxytools/tree/master/tools/extract_min_max_lines commit 718c006213709b631862b8d6d655fafc92e79ef7-dirty
author | bebatut |
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date | Fri, 15 Apr 2016 07:59:28 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/extract_min_max_lines.xml Fri Apr 15 07:59:28 2016 -0400 @@ -0,0 +1,80 @@ +<tool id="extract_min_max_lines" name="Extract lines corresponding" version="0.1.0"> + <description>to minimum and maximum values of a column</description> + + <requirements> + </requirements> + + <stdio> + </stdio> + + <version_command></version_command> + + <command><![CDATA[ + python $__tool_directory__/extract_min_max_lines.py + --input_file $input_file + --output_file $output_file + --column_id $column_id + --extraction_type $extraction_type + --extraction_nb $extraction_nb + ]]></command> + + <inputs> + <param name="input_file" type="data" format="tabular,tsv,csv" label="Input file" help="File in tabular format with tab-separated columns (--input_file)"/> + + <param name="column_id" type="data_column" data_ref="input_file" label="Column containing data to extract minimum or maximum values" multiple="false" numerical="true" help="(--column_id)"/> + + <param name="extraction_type" label="Type of values to extract lines" type="select" help="(--extraction_type)"> + <option value="min" selected="True">Minimal values</option> + <option value="max">Maximal values</option> + </param> + + <param name="extraction_nb" type="integer" value="10" label="Number of lines to extract" help="(--extraction_nb)"/> + </inputs> + + <outputs> + <data name="output_file" format="tabular" + label="${tool.name} on ${on_string}: Extracted lines" /> + </outputs> + + <tests> + <test> + <param name="input_file" value="input_file.tabular"/> + <param name="column_id" value="3"/> + <param name="extraction_type" value="min"/> + <param name="extraction_nb" value="10"/> + <output name="output_file" file="output_test_col_3_min.tabular"/> + </test> + <test> + <param name="input_file" value="input_file.tabular"/> + <param name="column_id" value="3"/> + <param name="extraction_type" value="max"/> + <param name="extraction_nb" value="10"/> + <output name="output_file" file="output_test_col_3_max.tabular"/> + </test> + <test> + <param name="input_file" value="input_file.tabular"/> + <param name="column_id" value="4"/> + <param name="extraction_type" value="min"/> + <param name="extraction_nb" value="10"/> + <output name="output_file" file="output_test_col_4_min.tabular"/> + </test> + <test> + <param name="input_file" value="input_file.tabular"/> + <param name="column_id" value="4"/> + <param name="extraction_type" value="max"/> + <param name="extraction_nb" value="10"/> + <output name="output_file" file="output_test_col_4_max.tabular"/> + </test> + </tests> + + <help><![CDATA[ +**What it does** + +This tool extract a variable number of lines corresponding to minimum or maximum values of a chosen column. + +The file must be in tabular format with tabular separated columns. To chosen column to extract minimum or maximum values must be data columns. + ]]></help> + + <citations> + </citations> +</tool> \ No newline at end of file