Mercurial > repos > bebatut > format_metaphlan2_output
view test-data/all_taxo_level_abundance.txt @ 3:2c87f56bd53a draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/format_metaphlan2_output/ commit 57a0433defa3cbc37ab34fbb0ebcfaeb680db8d5
| author | bgruening |
|---|---|
| date | Sat, 04 Nov 2023 19:00:01 +0000 |
| parents | 2bfa9b200600 |
| children |
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kingdom phylum class order family genus species strains abundance Bacteria 99.20573 Archaea 0.79427 Bacteria Deinococcus Thermus 45.20297 Bacteria Firmicutes 19.15406 Bacteria Proteobacteria 16.57369 Bacteria Actinobacteria 10.37863 Bacteria Bacteroidetes 7.89639 Archaea Euryarchaeota 0.79427 Bacteria Deinococcus Thermus Deinococci 45.20297 Bacteria Firmicutes Bacilli 17.33469 Bacteria Actinobacteria Actinobacteria 10.37863 Bacteria Proteobacteria Gammaproteobacteria 8.28554 Bacteria Bacteroidetes Bacteroidia 7.89639 Bacteria Proteobacteria Epsilonproteobacteria 4.03024 Bacteria Proteobacteria Betaproteobacteria 3.73739 Bacteria Firmicutes Clostridia 1.81937 Archaea Euryarchaeota Methanobacteria 0.79427 Bacteria Proteobacteria Alphaproteobacteria 0.52051 Bacteria Deinococcus Thermus Deinococci Deinococcales 45.20297 Bacteria Actinobacteria Actinobacteria Actinomycetales 10.37863 Bacteria Firmicutes Bacilli Bacillales 9.19153 Bacteria Firmicutes Bacilli Lactobacillales 8.14315 Bacteria Bacteroidetes Bacteroidia Bacteroidales 7.89639 Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales 6.58945 Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales 4.03024 Bacteria Proteobacteria Betaproteobacteria Neisseriales 3.73739 Bacteria Firmicutes Clostridia Clostridiales 1.81937 Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales 1.6961 Archaea Euryarchaeota Methanobacteria Methanobacteriales 0.79427 Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales 0.52051 Bacteria Deinococcus Thermus Deinococci Deinococcales Deinococcaceae 45.20297 Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae 7.89639 Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae 7.4516 Bacteria Actinobacteria Actinobacteria Actinomycetales Propionibacteriaceae 6.71696 Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae 6.43313 Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Moraxellaceae 5.88648 Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae 4.03024 Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae 3.73739 Bacteria Actinobacteria Actinobacteria Actinomycetales Actinomycetaceae 3.66166 Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae 1.81937 Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae 1.71002 Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae 1.6961 Bacteria Firmicutes Bacilli Bacillales Listeriaceae 1.58307 Archaea Euryarchaeota Methanobacteria Methanobacteriales Methanobacteriaceae 0.79427 Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae 0.70297 Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae 0.52051 Bacteria Firmicutes Bacilli Bacillales Bacillaceae 0.15687 Bacteria Deinococcus Thermus Deinococci Deinococcales Deinococcaceae Deinococcus 45.20297 Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides 7.89639 Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus 7.4516 Bacteria Actinobacteria Actinobacteria Actinomycetales Propionibacteriaceae Propionibacterium 6.71696 Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus 6.43313 Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Moraxellaceae Acinetobacter 5.88648 Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter 4.03024 Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria 3.73739 Bacteria Actinobacteria Actinobacteria Actinomycetales Actinomycetaceae Actinomyces 3.66166 Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium 1.81937 Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus 1.71002 Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia 1.6961 Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria 1.58307 Archaea Euryarchaeota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter 0.79427 Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas 0.70297 Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Rhodobacter 0.52051 Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus 0.15687 Bacteria Deinococcus Thermus Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiodurans 45.20297 Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides vulgatus 7.89639 Bacteria Actinobacteria Actinobacteria Actinomycetales Propionibacteriaceae Propionibacterium Propionibacterium acnes 6.71696 Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Moraxellaceae Acinetobacter Acinetobacter baumannii 5.88648 Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus epidermidis 4.54517 Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori 4.03024 Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis oralis pneumoniae 4.02995 Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria meningitidis 3.73739 Bacteria Actinobacteria Actinobacteria Actinomycetales Actinomycetaceae Actinomyces Actinomyces odontolyticus 3.66166 Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus 2.90642 Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mutans 2.35195 Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium beijerinckii 1.81937 Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis 1.71002 Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria Listeria monocytogenes 1.58307 Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli 0.89751 Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia unclassified 0.79859 Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas unclassified 0.55542 Archaea Euryarchaeota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii 0.55066 Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Rhodobacter Rhodobacter sphaeroides 0.52051 Archaea Euryarchaeota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter unclassified 0.24361 Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus thuringiensis 0.15687 Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa 0.14755 Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus agalactiae 0.05124 Bacteria Deinococcus Thermus Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiodurans GCF 000008565 45.20297 Bacteria Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae Bacteroides Bacteroides vulgatus GCF 000012825 7.89639 Bacteria Actinobacteria Actinobacteria Actinomycetales Propionibacteriaceae Propionibacterium Propionibacterium acnes Propionibacterium acnes unclassified 6.71696 Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Moraxellaceae Acinetobacter Acinetobacter baumannii Acinetobacter baumannii unclassified 5.88648 Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus epidermidis Staphylococcus epidermidis unclassified 4.54517 Bacteria Proteobacteria Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori Helicobacter pylori unclassified 4.03024 Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis oralis pneumoniae Streptococcus mitis oralis pneumoniae unclassified 4.02995 Bacteria Proteobacteria Betaproteobacteria Neisseriales Neisseriaceae Neisseria Neisseria meningitidis Neisseria meningitidis unclassified 3.73739 Bacteria Actinobacteria Actinobacteria Actinomycetales Actinomycetaceae Actinomyces Actinomyces odontolyticus Actinomyces odontolyticus unclassified 3.66166 Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus Staphylococcus aureus unclassified 2.90642 Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mutans Streptococcus mutans unclassified 2.35195 Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium beijerinckii Clostridium beijerinckii unclassified 1.81937 Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis Enterococcus faecalis unclassified 1.71002 Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria Listeria monocytogenes Listeria monocytogenes unclassified 1.58307 Bacteria Proteobacteria Gammaproteobacteria Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli Escherichia coli unclassified 0.89751 Archaea Euryarchaeota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii Methanobrevibacter smithii unclassified 0.55066 Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Rhodobacter Rhodobacter sphaeroides Rhodobacter sphaeroides unclassified 0.52051 Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus thuringiensis Bacillus cereus thuringiensis unclassified 0.15687 Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa Pseudomonas aeruginosa unclassified 0.14755 Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus agalactiae Streptococcus agalactiae unclassified 0.05124