Mercurial > repos > bebatut > humann2
comparison README.rst @ 1:bcd414bb721b draft default tip
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 79571d981d7d56657699be8aa24a40a36a8d0ab5-dirty
author | bebatut |
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date | Thu, 02 Jun 2016 04:23:09 -0400 |
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1 Galaxy wrappers for HUMAnN2 | |
2 =========================== | |
3 | |
4 Galaxy should be able to automatically install the dependencies, i.e. the | |
5 HUMAnN2 binaries and its dependencies. | |
6 | |
7 After installation, you must tell Galaxy about the defaut database with | |
8 clade-specific marker genes used for taxonomic profiling (MetaPhlAn2), and where | |
9 to find it: | |
10 | |
11 * Put the ``metaphlan2_db.loc`` file in the ``tool-data/`` folder, after uncommenting last line | |
12 * Download whole MetaPhlan2 source code: https://bitbucket.org/biobakery/metaphlan2/get/2.5.0.zip | |
13 * Unzip it | |
14 * Move ``db_v20`` folder into ``dependency_dir/metaphlan2/2.5.0/bebatut/package_metaphlan2_2_5_0/...`` folder |