Mercurial > repos > bebatut > humann2
diff humann2_split_table.xml @ 0:3d6f37e7e3a8 draft
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit 7aadbbdef6da644837f62ea428cb859eeff34f04-dirty
author | bebatut |
---|---|
date | Thu, 26 May 2016 10:20:59 -0400 |
parents | |
children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/humann2_split_table.xml Thu May 26 10:20:59 2016 -0400 @@ -0,0 +1,52 @@ +<tool id="humann2_split_table" name="Split" version="0.6.1"> + <description> a HUMAnN2 generated table</description> + + <macros> + <import>humann2_macros.xml</import> + </macros> + + <expand macro="requirements"/> + <expand macro="stdio"/> + + <version_command> +<![CDATA[ + humann2_split_table --version +]]> + </version_command> + + <command><![CDATA[ + humann2_split_table + -i $input_file + -o "output" + ]]></command> + + <inputs> + <param name="input_file" type="data" format="tsv,biom" label="Table to split into multiple tables" help="(-i)"/> + </inputs> + + <outputs> + <collection type="list" name="split_tables" label="${tool.name} on ${on_string}: Split tables"> + <discover_datasets pattern="__designation_and_ext__" directory="output"/> + </collection> + </outputs> + + <tests> + <test> + <param name="input_file" value="joined_pathway_coverage_abundance.tsv"/> + <output_collection name="split_tables" type="list" > + <element name="humann2_Abundance" file="split_joined_table_abundances.tsv" /> + <element name="humann2_Coverage" file="split_joined_table_coverage.tsv" /> + </output_collection> + </test> + </tests> + + <help><![CDATA[ +**What it does** + +HUMAnN is a pipeline for efficiently and accuretly profiling the presence/absence and abundance of microbial pathways in a community from metagenomic or metatranscriptomic sequencing data. `Read more about the tool <http://huttenhower.sph.harvard.edu/humann2/manual>`_. + +Split HUMAnN2 table is a tool to split a table with multiple columns. This file can have been generated with the join table tool. + ]]></help> + + <expand macro="citations"/> +</tool> \ No newline at end of file