--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/metaphlan2krona.xml	Wed Jun 01 10:45:26 2016 -0400
@@ -0,0 +1,54 @@
+<tool id="metaphlan2krona" name="Format MetaPhlAn2" version="2.5.0">
+
+    <description>output for Krona</description>
+
+    <macros>
+        <import>metaphlan2_macros.xml</import>
+    </macros>
+
+    <expand macro="requirements"/>
+    <expand macro="stdio"/>    
+
+    <version_command>
+<![CDATA[
+metaphlan2krona.py -v
+]]>
+    </version_command>
+
+    <command>
+<![CDATA[        
+        metaphlan2krona.py
+            -p $input_file
+            -k $krona
+]]>
+    </command>
+
+    <inputs>
+        <param name="input_file" type="data" format="tabular,txt" label="Input file (MetaPhlAN2 output)" help="(--profile)"/>
+    </inputs>
+
+    <outputs>
+        <data format="tabular" name="krona" label="${tool.name} on ${on_string}: Krona file" />
+    </outputs>
+
+    <tests>
+        <test>
+            <param name="input_file" value="community_profile.tabular"/>
+            <output name="krona" file="formatted_to_krona.tabular"/>
+        </test>      
+    </tests>
+
+    <help><![CDATA[
+
+**What it does**
+
+MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea, Eukaryotes and Viruses) from metagenomic shotgun sequencing data with species level resolution. For more information, check the `user manual <https://bitbucket.org/biobakery/metaphlan2/>`_.
+
+This tool format MetaPhlAn2 output for Krona.
+
+    ]]></help>
+
+    <citations>
+        <citation type="doi">10.1038/nmeth.3589</citation>
+    </citations>
+</tool>
\ No newline at end of file