# HG changeset patch
# User bgruening
# Date 1652374460 0
# Node ID f71fd828c1268374633f17fdf307697596470b97
# Parent  110076d77197cedc18fe8db0e05f8af33c13c730
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/10x_bamtofastq commit 60c20816923303efe1185c76f38a5b9a6fb8ce1c

diff -r 110076d77197 -r f71fd828c126 10x_bamtofastq.xml
--- a/10x_bamtofastq.xml	Tue May 10 12:02:15 2022 +0000
+++ b/10x_bamtofastq.xml	Thu May 12 16:54:20 2022 +0000
@@ -10,7 +10,7 @@
         $produced_from
         $tenx_bam
         outdir &&
-        mv outdir/*/*.fastq.gz outdir
+        cd outdir; for i in */*.fastq.gz;do mv \$i \${i/\//_};done
     ]]></command>
     <inputs>
         <param format="bam" name="tenx_bam" type="data" label="10X Genomics BAM file to convert to FASTQ"/>
@@ -51,9 +51,9 @@
         <test>
             <param name="tenx_bam" value="A10.sub.bam"/>
             <output_collection name="fastq_collection" type="list" count="3">
-                <element name="bamtofastq_S1_L007_I1_001" file="bamtofastq_S1_L007_I1_001.fastq.gz"/>
-                <element name="bamtofastq_S1_L007_R1_001" file="bamtofastq_S1_L007_R1_001.fastq.gz"/>
-                <element name="bamtofastq_S1_L007_R2_001" file="bamtofastq_S1_L007_R2_001.fastq.gz"/>
+                <element name="A10_MissingLibrary_1_CB54YACXX_bamtofastq_S1_L007_I1_001" file="bamtofastq_S1_L007_I1_001.fastq.gz"/>
+                <element name="A10_MissingLibrary_1_CB54YACXX_bamtofastq_S1_L007_R1_001" file="bamtofastq_S1_L007_R1_001.fastq.gz"/>
+                <element name="A10_MissingLibrary_1_CB54YACXX_bamtofastq_S1_L007_R2_001" file="bamtofastq_S1_L007_R2_001.fastq.gz"/>
             </output_collection>
         </test>
     </tests>