Mercurial > repos > bgruening > alevin

comparison alevin.xml @ 8:04b494623f8e draft

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 515548aaa4b79af78c6ffc6bd55f72ee9504d30f"
author bgruening
date Sat, 03 Oct 2020 18:49:31 +0000
parents ff78e9c7b0d8
children ecb9ea6269ee
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7:ff78e9c7b0d8 8:04b494623f8e
230 <param name="orientation" value="I"/> 230 <param name="orientation" value="I"/>
231 <param name="strandedness" value="SR"/> 231 <param name="strandedness" value="SR"/>
232 </conditional> 232 </conditional>
233 <param name="protocol" value="--chromium"/> 233 <param name="protocol" value="--chromium"/>
234 <param name="tgmap" value="minitxp.tsv"/> 234 <param name="tgmap" value="minitxp.tsv"/>
235 <param name="dumpMtx" value="Yes"/> 235 <section name="optional">
236 <param name="freqThreshold" value="5"/> 236 <param name="keepCBFraction" value="1"/>
237 <param name="dumpFeatures" value="Yes"/> 237 <param name="dumpFeatures" value="Yes"/>
238 <param name="keepCBFraction" value="1"/> 238 <param name="freqThreshold" value="5"/>
239 <param name="dumpMtx" value="Yes"/>
240 </section>
239 <output name="quants_mat.mtx" file="alevin_mat.mtx" ftype="mtx"/> 241 <output name="quants_mat.mtx" file="alevin_mat.mtx" ftype="mtx"/>
240 </test> 242 </test>
241 <test expect_num_outputs="14"> 243 <test expect_num_outputs="14">
242 <conditional name="refTranscriptSource"> 244 <conditional name="refTranscriptSource">
243 <param name="TranscriptSource" value="history"/> 245 <param name="TranscriptSource" value="history"/>
252 <param name="orientation" value="I"/> 254 <param name="orientation" value="I"/>
253 <param name="strandedness" value="SR"/> 255 <param name="strandedness" value="SR"/>
254 </conditional> 256 </conditional>
255 <param name="protocol" value="--chromium"/> 257 <param name="protocol" value="--chromium"/>
256 <param name="tgmap" value="minitxp.tsv"/> 258 <param name="tgmap" value="minitxp.tsv"/>
257 <param name="dumpMtx" value="Yes"/>
258 <param name="freqThreshold" value="5"/>
259 <param name="dumpFeatures" value="Yes"/>
260 <param name="keepCBFraction" value="1"/>
261 <section name="optional"> 259 <section name="optional">
260 <param name="keepCBFraction" value="1"/>
261 <param name="dumpFeatures" value="Yes"/>
262 <param name="numCellBootstraps" value="2"/> 262 <param name="numCellBootstraps" value="2"/>
263 <param name="freqThreshold" value="5"/>
264 <param name="dumpMtx" value="Yes"/>
263 </section> 265 </section>
264 <output name="quants_mat.mtx" file="alevin_mat.mtx" ftype="mtx"/> 266 <output name="quants_mat.mtx" file="alevin_mat.mtx" ftype="mtx"/>
265 </test> 267 </test>
266 </tests> 268 </tests>
267 <help><![CDATA[ 269 <help><![CDATA[