view umiout.sh @ 13:e32b215b7c04 draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 26cff0d523671ac1e56ba7ef4965861b387727e8
author bgruening
date Fri, 23 Jun 2023 17:03:24 +0000
parents e53f19161c59
children
line wrap: on
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#!/usr/bin/bash

mkdir fixed;
for file in ./umiout/*;
do prefix="${file%.dot.gz}";
prefix=${prefix/.\/umiout\//};
gunzip $file;
sed "s/umiout\/$prefix.dot.gz/$prefix/" umiout/$prefix.dot > fixed/$prefix.dot;
dot -Tpdf fixed/$prefix.dot -o fixed/$prefix.pdf;
done
ls fixed