# HG changeset patch
# User bgruening
# Date 1601750971 0
# Node ID 04b494623f8ee84a7d47a6ea59efef8c9f2eef3e
# Parent  ff78e9c7b0d8506ba3764d6aa414901f056c1c9e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/salmon commit 515548aaa4b79af78c6ffc6bd55f72ee9504d30f"

diff -r ff78e9c7b0d8 -r 04b494623f8e alevin.xml
--- a/alevin.xml	Sat Oct 03 18:21:49 2020 +0000
+++ b/alevin.xml	Sat Oct 03 18:49:31 2020 +0000
@@ -232,10 +232,12 @@
             </conditional>
             <param name="protocol" value="--chromium"/>
             <param name="tgmap" value="minitxp.tsv"/>
-            <param name="dumpMtx" value="Yes"/>
-            <param name="freqThreshold" value="5"/>
-            <param name="dumpFeatures" value="Yes"/>
-            <param name="keepCBFraction" value="1"/>
+            <section name="optional">
+                <param name="keepCBFraction" value="1"/>
+                <param name="dumpFeatures" value="Yes"/>
+                <param name="freqThreshold" value="5"/>
+                <param name="dumpMtx" value="Yes"/>
+            </section>
             <output name="quants_mat.mtx" file="alevin_mat.mtx" ftype="mtx"/>
         </test>
         <test expect_num_outputs="14">
@@ -254,12 +256,12 @@
             </conditional>
             <param name="protocol" value="--chromium"/>
             <param name="tgmap" value="minitxp.tsv"/>
-            <param name="dumpMtx" value="Yes"/>
-            <param name="freqThreshold" value="5"/>
-            <param name="dumpFeatures" value="Yes"/>
-            <param name="keepCBFraction" value="1"/>
             <section name="optional">
+                <param name="keepCBFraction" value="1"/>
+                <param name="dumpFeatures" value="Yes"/>
                 <param name="numCellBootstraps" value="2"/>
+                <param name="freqThreshold" value="5"/>
+                <param name="dumpMtx" value="Yes"/>
             </section>
             <output name="quants_mat.mtx" file="alevin_mat.mtx" ftype="mtx"/>
         </test>