annotate readme.rst @ 3:5784e268efca draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit 19cbd26d33334a903a2028d463b2132cdd1f7e57"
author bgruening
date Sun, 09 Aug 2020 10:15:12 -0400
parents 593bb8f5488b
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
5db064bbb3be Imported from capsule None
bgruening
parents:
diff changeset
1 Galaxy wrapper for AntiSmash
5db064bbb3be Imported from capsule None
bgruening
parents:
diff changeset
2 =====================================
5db064bbb3be Imported from capsule None
bgruening
parents:
diff changeset
3
5db064bbb3be Imported from capsule None
bgruening
parents:
diff changeset
4 This wrapper is copyright 2012-2014 by Björn Grüning.
5db064bbb3be Imported from capsule None
bgruening
parents:
diff changeset
5
5db064bbb3be Imported from capsule None
bgruening
parents:
diff changeset
6 This is a wrapper for the command line tool of antiSMASH.
5db064bbb3be Imported from capsule None
bgruening
parents:
diff changeset
7
5db064bbb3be Imported from capsule None
bgruening
parents:
diff changeset
8 antiSMASH allows the rapid genome-wide identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genomes.
5db064bbb3be Imported from capsule None
bgruening
parents:
diff changeset
9 It integrates and cross-links with a large number of in silico secondary metabolite analysis tools.
5db064bbb3be Imported from capsule None
bgruening
parents:
diff changeset
10
5db064bbb3be Imported from capsule None
bgruening
parents:
diff changeset
11 http://antismash.secondarymetabolites.org/
5db064bbb3be Imported from capsule None
bgruening
parents:
diff changeset
12
5db064bbb3be Imported from capsule None
bgruening
parents:
diff changeset
13 Marnix H. Medema, Kai Blin, Peter Cimermancic, Victor de Jager, Piotr Zakrzewski, Michael A. Fischbach, Tilmann Weber, Rainer Breitling & Eriko Takano (2011).
5db064bbb3be Imported from capsule None
bgruening
parents:
diff changeset
14 antiSMASH: Rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters. Nucleic Acids Research 39: W339-W346.
5db064bbb3be Imported from capsule None
bgruening
parents:
diff changeset
15
5db064bbb3be Imported from capsule None
bgruening
parents:
diff changeset
16
5db064bbb3be Imported from capsule None
bgruening
parents:
diff changeset
17 Installation
5db064bbb3be Imported from capsule None
bgruening
parents:
diff changeset
18 ============
5db064bbb3be Imported from capsule None
bgruening
parents:
diff changeset
19
1
593bb8f5488b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit 654a4f3b3a1602cec2510d51fb953fd456427e08
bgruening
parents: 0
diff changeset
20 Galaxy should be able to automatically install the dependencies using conda
0
5db064bbb3be Imported from capsule None
bgruening
parents:
diff changeset
21
5db064bbb3be Imported from capsule None
bgruening
parents:
diff changeset
22 History
5db064bbb3be Imported from capsule None
bgruening
parents:
diff changeset
23 =======
5db064bbb3be Imported from capsule None
bgruening
parents:
diff changeset
24
1
593bb8f5488b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit 654a4f3b3a1602cec2510d51fb953fd456427e08
bgruening
parents: 0
diff changeset
25 v0.2 - Antismash update 4.0.2
0
5db064bbb3be Imported from capsule None
bgruening
parents:
diff changeset
26 v0.1 - Initial public release
5db064bbb3be Imported from capsule None
bgruening
parents:
diff changeset
27
5db064bbb3be Imported from capsule None
bgruening
parents:
diff changeset
28
5db064bbb3be Imported from capsule None
bgruening
parents:
diff changeset
29 Licence (MIT)
5db064bbb3be Imported from capsule None
bgruening
parents:
diff changeset
30 =============
5db064bbb3be Imported from capsule None
bgruening
parents:
diff changeset
31
5db064bbb3be Imported from capsule None
bgruening
parents:
diff changeset
32 Permission is hereby granted, free of charge, to any person obtaining a copy
5db064bbb3be Imported from capsule None
bgruening
parents:
diff changeset
33 of this software and associated documentation files (the "Software"), to deal
5db064bbb3be Imported from capsule None
bgruening
parents:
diff changeset
34 in the Software without restriction, including without limitation the rights
5db064bbb3be Imported from capsule None
bgruening
parents:
diff changeset
35 to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
5db064bbb3be Imported from capsule None
bgruening
parents:
diff changeset
36 copies of the Software, and to permit persons to whom the Software is
5db064bbb3be Imported from capsule None
bgruening
parents:
diff changeset
37 furnished to do so, subject to the following conditions:
5db064bbb3be Imported from capsule None
bgruening
parents:
diff changeset
38
5db064bbb3be Imported from capsule None
bgruening
parents:
diff changeset
39 The above copyright notice and this permission notice shall be included in
5db064bbb3be Imported from capsule None
bgruening
parents:
diff changeset
40 all copies or substantial portions of the Software.
5db064bbb3be Imported from capsule None
bgruening
parents:
diff changeset
41
5db064bbb3be Imported from capsule None
bgruening
parents:
diff changeset
42 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
5db064bbb3be Imported from capsule None
bgruening
parents:
diff changeset
43 IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
5db064bbb3be Imported from capsule None
bgruening
parents:
diff changeset
44 FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
5db064bbb3be Imported from capsule None
bgruening
parents:
diff changeset
45 AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
5db064bbb3be Imported from capsule None
bgruening
parents:
diff changeset
46 LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
5db064bbb3be Imported from capsule None
bgruening
parents:
diff changeset
47 OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
5db064bbb3be Imported from capsule None
bgruening
parents:
diff changeset
48 THE SOFTWARE.