Mercurial > repos > bgruening > antismash

annotate test-data/harmonize.json @ 5:bc88856eddab draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
author bgruening
date Tue, 05 Jul 2022 10:37:38 +0000
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
5
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
1 [
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
2 {
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
3 "input_file_name": "ARBH01000003.1",
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
4 "gene_symbol": "mecA_6",
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
5 "gene_name": "mecA",
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
6 "reference_database_id": "resfinder",
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
7 "reference_database_version": 1,
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
8 "reference_accession": "BX571856",
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
9 "analysis_software_name": "abricate",
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
10 "analysis_software_version": 0.5,
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
11 "sequence_identity": 100,
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
12 "input_sequence_id": "ARBH01000003.1",
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
13 "input_protein_start": null,
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
14 "input_protein_stop": null,
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
15 "input_gene_start": 2,
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
16 "input_gene_stop": 3500,
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
17 "reference_protein_start": null,
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
18 "reference_protein_stop": null,
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
19 "reference_gene_start": null,
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
20 "reference_gene_stop": null,
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
21 "strand_orientation": "-",
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
22 "coverage_depth": null,
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
23 "coverage_percentage": 100,
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
24 "coverage_ratio": null,
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
25 "reference_gene_length": null,
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
26 "reference_protein_length": null,
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
27 "input_gene_length": null,
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
28 "input_protein_length": null,
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
29 "drug_class": "Amoxicillin;Amoxicillin+Clavulanic_acid;Ampicillin;Ampicillin+Clavulanic_acid;Cefepime;Cefixime;Cefotaxime;Cefoxitin;Ceftazidime;Ertapenem;Imipenem;Meropenem;Piperacillin;Piperacillin+Tazobactam",
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
30 "antimicrobial_agent": null,
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
31 "resistance_mechanism": null
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
32 },
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
33 {
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
34 "input_file_name": "ARBH01000003.1",
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
35 "gene_symbol": "mecA",
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
36 "gene_name": "mecA",
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
37 "reference_database_id": "resfinder",
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
38 "reference_database_version": 1,
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
39 "reference_accession": "BX571856",
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
40 "analysis_software_name": "staramr",
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
41 "analysis_software_version": 0.5,
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
42 "sequence_identity": 100,
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
43 "input_sequence_id": "ARBH01000003.1",
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
44 "input_protein_start": null,
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
45 "input_protein_stop": null,
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
46 "input_gene_start": 2,
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
47 "input_gene_stop": 3500,
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
48 "reference_protein_start": null,
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
49 "reference_protein_stop": null,
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
50 "reference_gene_start": null,
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
51 "reference_gene_stop": null,
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
52 "strand_orientation": null,
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
53 "coverage_depth": null,
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
54 "coverage_percentage": 100,
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
55 "coverage_ratio": 1,
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
56 "reference_gene_length": null,
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
57 "reference_protein_length": null,
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
58 "input_gene_length": null,
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
59 "input_protein_length": null,
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
60 "drug_class": "unknown[mecA_6_BX571856]",
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
61 "antimicrobial_agent": null,
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
62 "resistance_mechanism": null
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
63 }
bc88856eddab planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
bgruening
parents:
diff changeset
64 ]