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comparison test-data/ARBH01000003.1.cluster001 @ 1:593bb8f5488b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit 654a4f3b3a1602cec2510d51fb953fd456427e08
author bgruening
date Wed, 07 Feb 2018 06:22:58 -0500
parents
children 5784e268efca
comparison
equal deleted inserted replaced
0:5db064bbb3be 1:593bb8f5488b
1 LOCUS ARBH01000003 3500 bp DNA linear BCT 22-APR-2013
2 DEFINITION Amycolatopsis balhimycina FH 1894 strain DSM 44591
3 A3CEDRAFT_scaffold1.1_C3, whole genome shotgun sequence.
4 ACCESSION ARBH01000003
5 VERSION ARBH01000003.1
6 KEYWORDS .
7 SOURCE Amycolatopsis balhimycina FH 1894
8 ORGANISM Amycolatopsis balhimycina FH 1894
9 Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae;
10 Amycolatopsis.
11 FEATURES Location/Qualifiers
12 source 1..3500
13 /organism="Amycolatopsis balhimycina FH 1894"
14 /mol_type="genomic DNA"
15 /strain="DSM 44591"
16 /culture_collection="DSM:44591"
17 /db_xref="taxon:1089545"
18 cluster 1..3500
19 /note="Cluster number: 1"
20 /note="Detection rule(s) for this cluster type: t1pks:
21 ((PKS_KS & PKS_AT) or (ene_KS & PKS_AT) or (mod_KS &
22 PKS_AT) or (hyb_KS & PKS_AT) or (itr_KS & PKS_AT) or
23 (tra_KS & PKS_AT));"
24 /note="Monomers prediction: (mal)"
25 /note="Structure image: structures/genecluster1.png"
26 /cutoff=20000
27 /extension=20000
28 /product="t1pks"
29 /contig_edge="True"
30 CDS 3..3500
31 /aSProdPred="mal"
32 /note="smCOG:
33 SMCOG1001:short-chain_dehydrogenase/reductase_SDR (Score:
34 64.2; E-value: 2.2e-19);"
35 /locus_tag="ctg1_1"
36 /translation="GGVLALPAELDRRGGDRLAAVLSGATGEDQLAIRAAGVFGRRVVR
37 APAGDRAPARTWTPRGTTLITGGTGTLAPHLARWLAEQGAEHIVLTSRTGAEAPKARQL
38 LAELGETVEAVACDVTDKAALAALLARLRAEGRTVRNVVHTAAVIELHTLAETDLAAFS
39 RTVHAKVVGARNLDELLDTDELDAFVLYSSTAGLWGTGAHAAYVAGNAYLHALAAHRRA
40 RGLRATALSWGIWADDRELGRVDPEQIVRSGLVFMAPELALEGLRRALDDDETALAVAD
41 LDWERYYPVYTAVRPTLLFDELPEVRRLTEAAAATAATGAGGEFAARLRTLPEAERAHL
42 LLELVRAEAAAVLGHASADALPEDRAFRDVGFDSVTAVDLRNRISAGTGLTLPATMVFD
43 HPTPRRLAGFLAATITGSGAVEQAPAVAGVDTGEPVAIIGMACRYPGGANTPERLWDLV
44 VGGVDAISGFPADRNWPTDALYDPDPDAGGKTYSVQGGFLHEAAEFDPGFFGISPREAL
45 SMDPQQRLLLETAWEAFERAGIDPHTLRGSGTGTFIGASYQDYTAAVSGAVDNADGHMI
46 TGSLGSILSGRLSYLFGLEGPAVTLDTACSSSLVAIHLAAQSLRSGESSLALAGGVSVM
47 ATPGAFVGFSRQRALATDGRCKAYSDRADGMTLGEGVGLVLLEKLSDAQRNGHRILAVV
48 RGSATNQDGASNGMTAPSGPSQQRVIRQALANARLSASEVDVIEGHGTGTALGDPIEAQ
49 ALLATYGQDRERPLLLGSVKSNIGHTQMASGVAGVIKVVQALRHGLVPKTLHVDEPSTH
50 VDWSTGSIELPSGSVPWPESGRPRRAGISSFGLSGTNVHTILEQAPEPAAEAGPEPEPG
51 LVPVPLSGRTEAALRAQAATVLDTLDDGVSPAVLGYSLASTRSAFEHRAVLLAEDHDEL
52 RRGLAALAGDQPDGGVVRGTVTRGRTAFLFAGQGSQRAGMGRELYERHPVFADALDAVL
53 GHFDLPRALRDVMWDDDSTALDETGYTQPALFAFEVALFRLLESWGVTPDYLAGHSIGE
54 IAAAHVAGVLSLADACALVAARGALMQALPSGGAMVSVRGSEADVAGHLGEDVAVAAVN
55 GPESVVLAGTEDAVLQAAGRLEAAGHKVRRLRVSHAFHSPLMDPVLAEFATVAQGLTYH
56 "
57 /sec_met="Type: t1pks"
58 /sec_met="Domains detected: PP-binding (E-value: 1.3e-15,
59 bitscore: 44.0, seeds: 164); PKS_AT (E-value: 8.7e-82,
60 bitscore: 260.9, seeds: 1682); mod_KS (E-value: 9.4e-224,
61 bitscore: 729.0, seeds: 217); adh_short (E-value: 7.1e-52,
62 bitscore: 162.1, seeds: 230)"
63 /sec_met="Kind: biosynthetic"
64 /sec_met="NRPS/PKS subtype: Type I Modular PKS"
65 /sec_met="NRPS/PKS Domain: PKS_KR (60-237). E-value:
66 1.4e-53. Score: 173.1; Predicted KR activity: active;
67 Predicted KR stereochemistry: A2;"
68 /sec_met="NRPS/PKS Domain: ACP (341-412). E-value: 7.8e-31.
69 Score: 97.8;"
70 /sec_met="NRPS/PKS Domain: PKS_KS (434-858). E-value:
71 3e-179. Score: 587.9;"
72 /sec_met="NRPS/PKS Domain: PKS_AT (958-1166). E-value:
73 4e-80. Score: 260.9; Substrate specificity predictions: mal
74 (PKS signature), mal (Minowa), mal (consensus);"
75 aSDomain 183..713
76 /domain="PKS_KR"
77 /locus_tag="ctg1_1"
78 /detection="hmmscan"
79 /database="nrpspksdomains.hmm"
80 /evalue="1.40E-53"
81 /score="173.1"
82 /translation="GTTLITGGTGTLAPHLARWLAEQGAEHIVLTSRTGAEAPKARQLL
83 AELGETVEAVACDVTDKAALAALLARLRAEGRTVRNVVHTAAVIELHTLAETDLAAFSR
84 TVHAKVVGARNLDELLDTDELDAFVLYSSTAGLWGTGAHAAYVAGNAYLHALAAHRRAR
85 GLRATALSWGIWAD"
86 /label="ctg1_1_KR1"
87 /asDomain_id="nrpspksdomains_ctg1_1_KR1"
88 /specificity="KR activity: active"
89 /specificity="KR stereochemistry: A2"
90 CDS_motif 192..284
91 /note="NRPS/PKS Motif: PKSI-KR_m1 (e-value: 3.8e-15,
92 bit-score: 48.4)"
93 /locus_tag="ctg1_1"
94 /motif="PKSI-KR_m1"
95 /database="abmotifs"
96 /evalue="3.80E-15"
97 /asDomain_id="nrpspksmotif_ctg1_1_0001"
98 /detection="hmmscan"
99 /score="48.4"
100 /aSTool="pksnrpsmotif"
101 /translation="LITGGTGTLAPHLARWLAEQGAEHIVLTSRT"
102 /label="PKSI-KR_m1"
103 CDS_motif 555..665
104 /note="NRPS/PKS Motif: PKSI-KR_m4 (e-value: 1.6e-14,
105 bit-score: 46.4)"
106 /locus_tag="ctg1_1"
107 /motif="PKSI-KR_m4"
108 /database="abmotifs"
109 /evalue="1.60E-14"
110 /asDomain_id="nrpspksmotif_ctg1_1_0002"
111 /detection="hmmscan"
112 /score="46.4"
113 /aSTool="pksnrpsmotif"
114 /translation="LDAFVLYSSTAGLWGTGAHAAYVAGNAYLHALAAHRR"
115 /label="PKSI-KR_m4"
116 aSDomain 1026..1238
117 /domain="ACP"
118 /locus_tag="ctg1_1"
119 /detection="hmmscan"
120 /database="nrpspksdomains.hmm"
121 /evalue="7.80E-31"
122 /score="97.8"
123 /translation="LELVRAEAAAVLGHASADALPEDRAFRDVGFDSVTAVDLRNRISA
124 GTGLTLPATMVFDHPTPRRLAGFLAA"
125 /asDomain_id="nrpspksdomains_ctg1_1_Xdom01"
126 aSDomain 1305..2576
127 /domain="PKS_KS"
128 /locus_tag="ctg1_1"
129 /detection="hmmscan"
130 /database="nrpspksdomains.hmm"
131 /evalue="3.00E-179"
132 /score="587.9"
133 /translation="VAIIGMACRYPGGANTPERLWDLVVGGVDAISGFPADRNWPTDAL
134 YDPDPDAGGKTYSVQGGFLHEAAEFDPGFFGISPREALSMDPQQRLLLETAWEAFERAG
135 IDPHTLRGSGTGTFIGASYQDYTAAVSGAVDNADGHMITGSLGSILSGRLSYLFGLEGP
136 AVTLDTACSSSLVAIHLAAQSLRSGESSLALAGGVSVMATPGAFVGFSRQRALATDGRC
137 KAYSDRADGMTLGEGVGLVLLEKLSDAQRNGHRILAVVRGSATNQDGASNGMTAPSGPS
138 QQRVIRQALANARLSASEVDVIEGHGTGTALGDPIEAQALLATYGQDRERPLLLGSVKS
139 NIGHTQMASGVAGVIKVVQALRHGLVPKTLHVDEPSTHVDWSTGSIELPSGSVPWPESG
140 RPRRAGISSFGLSGTNVHTILEQAP"
141 /asDomain_id="nrpspksdomains_ctg1_1_Xdom02"
142 CDS_motif 1788..1835
143 /note="NRPS/PKS Motif: PKSI-KS_m3 (e-value: 2e-06,
144 bit-score: 19.7)"
145 /locus_tag="ctg1_1"
146 /motif="PKSI-KS_m3"
147 /database="abmotifs"
148 /evalue="2.00E-06"
149 /asDomain_id="nrpspksmotif_ctg1_1_0003"
150 /detection="hmmscan"
151 /score="19.7"
152 /aSTool="pksnrpsmotif"
153 /translation="GPAVTLDTACSSSLVA"
154 /label="PKSI-KS_m3"
155 CDS_motif 2211..2255
156 /note="NRPS/PKS Motif: PKSI-KS_m5 (e-value: 0.0019,
157 bit-score: 10.8)"
158 /locus_tag="ctg1_1"
159 /motif="PKSI-KS_m5"
160 /database="abmotifs"
161 /evalue="1.90E-03"
162 /asDomain_id="nrpspksmotif_ctg1_1_0004"
163 /detection="hmmscan"
164 /score="10.8"
165 /aSTool="pksnrpsmotif"
166 /translation="IEGHGTGTALGDPIE"
167 /label="PKSI-KS_m5"
168 CDS_motif 2310..2354
169 /note="NRPS/PKS Motif: PKSI-KS_m6 (e-value: 0.0011,
170 bit-score: 11.5)"
171 /locus_tag="ctg1_1"
172 /motif="PKSI-KS_m6"
173 /database="abmotifs"
174 /evalue="1.10E-03"
175 /asDomain_id="nrpspksmotif_ctg1_1_0005"
176 /detection="hmmscan"
177 /score="11.5"
178 /aSTool="pksnrpsmotif"
179 /translation="GSVKSNIGHTQMASG"
180 /label="PKSI-KS_m6"
181 CDS_motif 2874..2927
182 /note="NRPS/PKS Motif: PKSI-AT-mM_m1 (e-value: 2.3e-06,
183 bit-score: 19.8)"
184 /locus_tag="ctg1_1"
185 /motif="PKSI-AT-mM_m1"
186 /database="abmotifs"
187 /evalue="2.30E-06"
188 /asDomain_id="nrpspksmotif_ctg1_1_0006"
189 /detection="hmmscan"
190 /score="19.8"
191 /aSTool="pksnrpsmotif"
192 /translation="FLFAGQGSQRAGMGRELY"
193 /label="PKSI-AT-mM_m1"
194 aSDomain 2877..3500
195 /domain="PKS_AT"
196 /locus_tag="ctg1_1"
197 /detection="hmmscan"
198 /database="nrpspksdomains.hmm"
199 /evalue="4.00E-80"
200 /score="260.9"
201 /translation="LFAGQGSQRAGMGRELYERHPVFADALDAVLGHFDLPRALRDVMW
202 DDDSTALDETGYTQPALFAFEVALFRLLESWGVTPDYLAGHSIGEIAAAHVAGVLSLAD
203 ACALVAARGALMQALPSGGAMVSVRGSEADVAGHLGEDVAVAAVNGPESVVLAGTEDAV
204 LQAAGRLEAAGHKVRRLRVSHAFHSPLMDPVLAEFATVAQGLTYH"
205 /label="ctg1_1_AT1"
206 /asDomain_id="nrpspksdomains_ctg1_1_AT1"
207 /specificity="PKS signature: mal"
208 /specificity="Minowa: mal"
209 /specificity="consensus: mal"
210 CDS_motif 3033..3095
211 /note="NRPS/PKS Motif: PKSI-AT-mM_m2 (e-value: 0.0032,
212 bit-score: 10.9)"
213 /locus_tag="ctg1_1"
214 /motif="PKSI-AT-mM_m2"
215 /database="abmotifs"
216 /evalue="3.20E-03"
217 /asDomain_id="nrpspksmotif_ctg1_1_0007"
218 /detection="hmmscan"
219 /score="10.9"
220 /aSTool="pksnrpsmotif"
221 /translation="DETGYTQPALFAFEVALFRLL"
222 /label="PKSI-AT-mM_m2"
223 CDS_motif 3105..3227
224 /note="NRPS/PKS Motif: PKSI-AT-M_m3 (e-value: 2.3e-22,
225 bit-score: 71.3)"
226 /locus_tag="ctg1_1"
227 /motif="PKSI-AT-M_m3"
228 /database="abmotifs"
229 /evalue="2.30E-22"
230 /asDomain_id="nrpspksmotif_ctg1_1_0008"
231 /detection="hmmscan"
232 /score="71.3"
233 /aSTool="pksnrpsmotif"
234 /translation="GVTPDYLAGHSIGEIAAAHVAGVLSLADACALVAARGALMQ"
235 /label="PKSI-AT-M_m3"
236 CDS_motif 3312..3350
237 /note="NRPS/PKS Motif: PKSI-AT-M_m5 (e-value: 0.00047,
238 bit-score: 13.4)"
239 /locus_tag="ctg1_1"
240 /motif="PKSI-AT-M_m5"
241 /database="abmotifs"
242 /evalue="4.70E-04"
243 /asDomain_id="nrpspksmotif_ctg1_1_0009"
244 /detection="hmmscan"
245 /score="13.4"
246 /aSTool="pksnrpsmotif"
247 /translation="AAVNGPESVVLAG"
248 /label="PKSI-AT-M_m5"
249 ORIGIN
250 1 ggggcggcgt gctcgccctg cccgccgagc tggaccgccg cggcggcgac cggctggcgg
251 61 ctgtgctgtc cggcgccacc ggcgaagacc agctggccat ccgcgccgcc ggcgtgttcg
252 121 gccgccgcgt ggtgcgggcc ccggccggcg accgcgcgcc ggcgcggacc tggaccccgc
253 181 gcggcaccac gctgatcacc ggcggcaccg gcaccctggc cccgcacctg gcccgctggc
254 241 tggccgagca gggcgccgag cacatcgtgc tgaccagccg caccggcgcc gaggccccga
255 301 aggcccggca gctgctggcg gagctgggcg agaccgtcga ggcggtggcc tgcgacgtca
256 361 ccgacaaggc ggcgctggcc gccctgctgg cgcggttgcg ggccgagggc cggaccgtgc
257 421 ggaacgtggt gcacacggcc gccgtgatcg agctgcacac gctggccgag accgacctgg
258 481 ccgcgttctc ccggaccgtg cacgccaagg tggtgggcgc gcgcaacctg gacgagctgc
259 541 tcgacaccga cgagctcgat gcgttcgtgc tgtactcctc caccgccggc ctgtggggca
260 601 ccggcgcgca cgccgcctac gtggccggca acgcgtactt gcacgcgctg gcagcccacc
261 661 ggcgcgcccg ggggctgcgg gccaccgcgc tgtcgtgggg catctgggcc gacgaccgcg
262 721 aactcggccg ggtcgacccg gagcagatcg tgcgcagcgg cctggtgttc atggcgccgg
263 781 agctggcgct ggagggtctg cgccgggccc tggacgacga cgagaccgcg ctggccgtgg
264 841 ccgatctgga ctgggagcgg tactacccgg tctacaccgc cgtccggccg acgctgctgt
265 901 tcgacgagct gccggaggtg cggcggctca ccgaggccgc cgccgccacg gccgccaccg
266 961 gcgccggcgg cgagttcgcc gcccggctgc gcacgctgcc cgaggccgag cgcgcccacc
267 1021 tgctcctgga actggtccgg gccgaggccg cggccgtgct gggccacgcg tcggccgacg
268 1081 cgctgcccga ggaccgcgcc ttccgcgacg tcggcttcga ctcggtcacc gcggtcgacc
269 1141 tgcgcaaccg gatctccgcc ggcaccggcc tgaccctgcc cgccaccatg gtgttcgacc
270 1201 acccgacgcc gaggcggctg gccgggttcc tggccgccac gatcaccggc tcgggtgccg
271 1261 tcgagcaggc accggccgtg gccggcgtgg acaccggcga gcccgtcgcc atcatcggga
272 1321 tggcctgccg ctacccgggt ggcgcgaaca ccccggaacg gttgtgggac ctggtcgtgg
273 1381 gcggcgtgga cgccatctcc ggcttcccgg ccgaccgcaa ctggccgacc gacgcgctct
274 1441 acgacccgga cccggacgcc ggcggcaaga cctattcggt gcagggcggc ttcctgcacg
275 1501 aggcggccga gttcgacccg ggcttcttcg gcatctcgcc gcgggaggca ctgtccatgg
276 1561 atccgcagca gcgcctgctg ctggagacgg cgtgggaggc gttcgagcgg gccgggatcg
277 1621 acccgcacac gctgcggggc agcggcaccg gcaccttcat cggggccagc taccaggact
278 1681 acaccgcggc cgtgtccggc gcggtggaca acgccgacgg ccacatgatc accggctcgc
279 1741 tgggcagcat cctgtccggc cggctctcct acctgttcgg gctggagggc ccggcggtca
280 1801 ccctggacac cgcctgctcg tcgtcgctgg tcgccatcca cctggccgcg cagtcgctgc
281 1861 ggtcggggga gagcagcctg gcgctggccg gcggggtgag cgtgatggcg acgccggggg
282 1921 cgttcgtcgg cttctcgcgc cagcgcgcac tggccacgga cggccgttgc aaggcctact
283 1981 cggaccgggc cgacggcatg accctcggcg agggcgtcgg cctggtgctg ctggagaagc
284 2041 tgtccgacgc gcagcgcaac gggcaccgga tcctggcggt ggtccggggt tcggccacga
285 2101 accaggacgg cgcgtccaac ggcatgaccg cgcccagcgg cccgtcccag cagcgggtga
286 2161 tccggcaggc gctggccaac gcgcggctct cggcgtccga ggtggacgtg atcgagggcc
287 2221 acggcaccgg caccgcgctg ggcgacccga tcgaggccca ggccctgctg gccacctacg
288 2281 gccaggaccg ggaacggccg ctgctgctcg gctcggtgaa gtccaacatc ggccacaccc
289 2341 agatggcctc cggcgtggcc ggcgtgatca aggtggtgca ggcgctgcgg cacgggctgg
290 2401 tacccaagac gctgcacgtg gacgagccct ccacgcacgt cgactggagc accggctcga
291 2461 tcgagctgcc gtccggcagc gtgccgtggc cggagagcgg ccggccgcgc cgggccggta
292 2521 tctcgtcctt cgggctgagc ggcacgaacg tgcacaccat cctcgagcag gccccggaac
293 2581 cggccgccga agccggcccc gagccggagc ccggcctggt gccggtcccg ctgtccggcc
294 2641 ggacggaagc agcgctgcgc gctcaggccg ccaccgtgct ggacaccctg gacgacggcg
295 2701 tgtcgccggc cgtgctcggg tactcgctgg cctccacccg gtcggccttc gaacaccgtg
296 2761 cggtgctgct ggccgaggac cacgacgaac tgcggcgcgg cctggccgca ctggccggcg
297 2821 accagccgga cggcggcgtg gtgcggggca ccgtgacgcg gggccgcacg gcgttcctgt
298 2881 tcgccggcca gggcagccag cgggccggga tgggccgcga gctgtacgag cgccacccgg
299 2941 tgttcgccga cgcgctggac gcggtgctgg ggcacttcga cctgccccgt gcgctgcggg
300 3001 acgtgatgtg ggacgacgat tccacggccc tcgacgagac ggggtacacc cagccggcgt
301 3061 tgttcgcctt cgaggtggcg ttgttccggt tgctggagtc gtggggtgtg acgccggatt
302 3121 acctggccgg gcattcgatc ggtgagatcg ccgcggcgca cgtggccgga gtgttgtcgc
303 3181 tggccgatgc ctgtgcgttg gtcgctgcgc ggggtgcgct gatgcaggcg ctgccgtccg
304 3241 gcggggccat ggtttcggtg cgcggctccg aggccgacgt cgccgggcac ctcggcgagg
305 3301 acgtcgccgt cgcggcggtc aacgggcccg agtcggtggt gctggccggg accgaggacg
306 3361 cggtgctcca ggcggccggc cgcctggagg ccgccggcca caaggtccgc cgcctgcggg
307 3421 tcagccacgc cttccactcg cccttgatgg atcccgtgct ggccgagttc gcgacggtgg
308 3481 ctcagggcct gacctaccac
309 //