Mercurial > repos > bgruening > antismash

comparison test-data/harmonize.json @ 5:bc88856eddab draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
author bgruening
date Tue, 05 Jul 2022 10:37:38 +0000
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4:e78e25d3b4bd 5:bc88856eddab
1 [
2 {
3 "input_file_name": "ARBH01000003.1",
4 "gene_symbol": "mecA_6",
5 "gene_name": "mecA",
6 "reference_database_id": "resfinder",
7 "reference_database_version": 1,
8 "reference_accession": "BX571856",
9 "analysis_software_name": "abricate",
10 "analysis_software_version": 0.5,
11 "sequence_identity": 100,
12 "input_sequence_id": "ARBH01000003.1",
13 "input_protein_start": null,
14 "input_protein_stop": null,
15 "input_gene_start": 2,
16 "input_gene_stop": 3500,
17 "reference_protein_start": null,
18 "reference_protein_stop": null,
19 "reference_gene_start": null,
20 "reference_gene_stop": null,
21 "strand_orientation": "-",
22 "coverage_depth": null,
23 "coverage_percentage": 100,
24 "coverage_ratio": null,
25 "reference_gene_length": null,
26 "reference_protein_length": null,
27 "input_gene_length": null,
28 "input_protein_length": null,
29 "drug_class": "Amoxicillin;Amoxicillin+Clavulanic_acid;Ampicillin;Ampicillin+Clavulanic_acid;Cefepime;Cefixime;Cefotaxime;Cefoxitin;Ceftazidime;Ertapenem;Imipenem;Meropenem;Piperacillin;Piperacillin+Tazobactam",
30 "antimicrobial_agent": null,
31 "resistance_mechanism": null
32 },
33 {
34 "input_file_name": "ARBH01000003.1",
35 "gene_symbol": "mecA",
36 "gene_name": "mecA",
37 "reference_database_id": "resfinder",
38 "reference_database_version": 1,
39 "reference_accession": "BX571856",
40 "analysis_software_name": "staramr",
41 "analysis_software_version": 0.5,
42 "sequence_identity": 100,
43 "input_sequence_id": "ARBH01000003.1",
44 "input_protein_start": null,
45 "input_protein_stop": null,
46 "input_gene_start": 2,
47 "input_gene_stop": 3500,
48 "reference_protein_start": null,
49 "reference_protein_stop": null,
50 "reference_gene_start": null,
51 "reference_gene_stop": null,
52 "strand_orientation": null,
53 "coverage_depth": null,
54 "coverage_percentage": 100,
55 "coverage_ratio": 1,
56 "reference_gene_length": null,
57 "reference_protein_length": null,
58 "input_gene_length": null,
59 "input_protein_length": null,
60 "drug_class": "unknown[mecA_6_BX571856]",
61 "antimicrobial_agent": null,
62 "resistance_mechanism": null
63 }
64 ]