Mercurial > repos > bgruening > antismash
comparison test-data/test_02.genbank @ 4:e78e25d3b4bd draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit f5f8e44e726c9f2cc57e0f0fe8182a73afa56669
| author | bgruening |
|---|---|
| date | Tue, 31 May 2022 14:04:07 +0000 |
| parents | |
| children |
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| 3:5784e268efca | 4:e78e25d3b4bd |
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| 1 LOCUS ARBH01000003 3500 bp DNA linear BCT 22-APR-2013 | |
| 2 DEFINITION Amycolatopsis balhimycina FH 1894 strain DSM 44591 | |
| 3 A3CEDRAFT_scaffold1.1_C3, whole genome shotgun sequence. | |
| 4 ACCESSION ARBH01000003 | |
| 5 VERSION ARBH01000003.1 | |
| 6 DBLINK BioProject: PRJNA165347 | |
| 7 BioSample: SAMN02256403 | |
| 8 KEYWORDS WGS; GSC:MIGS:2.1; IMPROVED_HIGH_QUALITY_DRAFT. | |
| 9 SOURCE Amycolatopsis balhimycina FH 1894 | |
| 10 ORGANISM Amycolatopsis balhimycina FH 1894 | |
| 11 Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; | |
| 12 Amycolatopsis. | |
| 13 REFERENCE 1 (bases 1 to 3500) | |
| 14 AUTHORS Klenk,H.-P., Huntemann,M., Han,J., Chen,A., Kyrpides,N., | |
| 15 Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N., | |
| 16 Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N., | |
| 17 Hua,S.X. and Woyke,T. | |
| 18 TITLE Direct Submission | |
| 19 JOURNAL Submitted (16-APR-2013) DOE Joint Genome Institute, 2800 Mitchell | |
| 20 Drive, Walnut Creek, CA 94598-1698, USA | |
| 21 COMMENT ##MIGS-Data-START## | |
| 22 investigation_type :: bacteria_archaea | |
| 23 project_name :: Amycolatopsis balhimycina DSM 44591 | |
| 24 collection_date :: Missing | |
| 25 lat_lon :: Missing | |
| 26 depth :: Missing | |
| 27 alt_elev :: Missing | |
| 28 country :: India | |
| 29 num_replicons :: Missing | |
| 30 ref_biomaterial :: DSM 44591 | |
| 31 biotic_relationship :: Free living | |
| 32 rel_to_oxygen :: Aerobe | |
| 33 isol_growth_condt :: Missing | |
| 34 assembly :: Velvet v. 1.1.05; ALLPATHS v. r38445; Phrap v. 4.24 | |
| 35 finishing_strategy :: Missing | |
| 36 environment :: Soil | |
| 37 trophic_level :: Missing | |
| 38 sequencing_meth :: WGS | |
| 39 GOLD Stamp ID :: Gi10728 | |
| 40 Type Strain :: Yes | |
| 41 Funding Program :: DOE-CSP 2011 | |
| 42 Isolation Site :: Soil | |
| 43 Cell Shape :: Filament-shaped | |
| 44 Motility :: Nonmotile | |
| 45 Sporulation :: Sporulating | |
| 46 Temperature Range :: Mesophile | |
| 47 Gram Staining :: Gram+ | |
| 48 Diseases :: None | |
| 49 ##MIGS-Data-END## | |
| 50 ##Genome-Assembly-Data-START## | |
| 51 Finishing Goal :: Improved High-Quality Draft | |
| 52 Current Finishing Status :: Improved High-Quality Draft | |
| 53 Assembly Method :: Velvet v. 1.1.05; ALLPATHS v. r38445; Phrap v. | |
| 54 4.24 | |
| 55 Genome Coverage :: Unknown | |
| 56 Sequencing Technology :: Illumina GAii | |
| 57 ##Genome-Assembly-Data-END## | |
| 58 URL -- http://www.jgi.doe.gov | |
| 59 JGI Project ID: 404843 | |
| 60 Source DNA and Organism available from Hans-Peter Klenk | |
| 61 (hpk@dsmz.de) | |
| 62 Source DNA available from Hans-Peter Klenk (hpk@dsmz.de) | |
| 63 Organism available from Hans-Peter Klenk (hpk@dsmz.de) | |
| 64 Contacts: Hans-Peter Klenk (hpk@dsmz.de) | |
| 65 Tanja Woyke (microbe@cuba.jgi-psf.org) | |
| 66 Whole genome sequencing and draft assembly at JGI-PGF | |
| 67 Annotation by JGI-ORNL | |
| 68 The JGI and collaborators endorse the principles for the | |
| 69 distribution and use of large scale sequencing data adopted by the | |
| 70 larger genome sequencing community and urge users of this data to | |
| 71 follow them. It is our intention to publish the work of this | |
| 72 project in a timely fashion and we welcome collaborative | |
| 73 interaction on the project and analysis. | |
| 74 (http://www.genome.gov/page.cfm?pageID=10506376) | |
| 75 Full annotations are available from IMG. | |
| 76 ##antiSMASH-Data-START## | |
| 77 Version :: 6.1.1 | |
| 78 Run date :: 2022-05-11 13:39:18 | |
| 79 ##antiSMASH-Data-END## | |
| 80 FEATURES Location/Qualifiers | |
| 81 source 1..3500 | |
| 82 /culture_collection="DSM:44591" | |
| 83 /db_xref="taxon:1089545" | |
| 84 /mol_type="genomic DNA" | |
| 85 /organism="Amycolatopsis balhimycina FH 1894" | |
| 86 /strain="DSM 44591" | |
| 87 CDS complement(170..3134) | |
| 88 /ID="input.cds1.1" | |
| 89 /Name="input.path1.gene1" | |
| 90 /Note="initial-exon" | |
| 91 /gene="input.path1.gene1" | |
| 92 /phase="0" | |
| 93 /source="GlimmerHMM" | |
| 94 /transl_table=1 | |
| 95 /translation="MPGQVIRRHTPRLQQPEQRHLEGEQRRLGVPRLVEGRGIVVPHHV | |
| 96 PQRTGQVEVPQHRVQRVGEHRVALVQLAAHPGPLAALAGEQERRAAPRHGAPHHAAVRL | |
| 97 VAGQCGQAAPQFVVVLGQQHRTVFEGRPGGGQRVPEHGRRHAVVQGVQHGGGLSAQRCF | |
| 98 RPAGQRDRHQAGLRLGAGFGGRFRGLLEDGVHVRAAQPEGRDTGPARPAALRPRHAAGR | |
| 99 QLDRAGAPVDVRGGLVHVQRLGYQPVPQRLHHLDHAGHAGGHLGVADVGLHRAEQQRPF | |
| 100 PVLAVGGQQGLGLDRVAQRGAGAVALDHVHLGRREPRVGQRLPDHPLLGRAAGRGHAVG | |
| 101 RAVLVRGRTPDHRQDPVPVALRVGQLLQQHQADALAEGHAVGPVRVGLATAVRGQCALA | |
| 102 READERPRRRHHAHPAGQRQAALPRPQRLRGQVDGDQRRRAGGVQGDRRALQPEQVGEP | |
| 103 AGQDAAQRAGDHVAVGVVHRAGHGRGVVLVAGPDEGAGAAAPQRVRVDPGPLERLPRRL | |
| 104 QQQALLRIHGQCLPRRDAEEARVELGRLVQEAALHRIGLAAGVRVRVVERVGRPVAVGR | |
| 105 EAGDGVHAAHDQVPQPFRGVRATRVAAGHPDDGDGLAGVHAGHGRCLLDGTRAGDRGGQ | |
| 106 EPGQPPRRRVVEHHGGGQGQAGAGGDPVAQVDRGDRVEADVAEGAVLGQRVGRRVAQHG | |
| 107 RGLGPDQFQEQVGALGLGQRAQPGGELAAGAGGGRGGGGLGEPPHLRQLVEQQRRPDGG | |
| 108 VDRVVPLPVQIGHGQRGLVVVQGPAQTLQRQLRRHEHQAAAHDLLRVDPAEFAVVGPDA | |
| 109 PRQRGGPQPPGAPVGCQRVQVRVAGHVGGVRAGAPQAGGGGVQHERIELVGVEQLVQVA | |
| 110 RAHHLGVHGPGERGQVGLGQRVQLDHGGRVHHVPHGPALGPQPRQQGGQRRLVGDVAGH | |
| 111 RLDGLAQLRQQLPGLRGLGAGAAGQHDVLGALLGQPAGQVRGQGAGAAGDQRGAARGP" | |
| 112 CDS 3249..3404 | |
| 113 /ID="input.cds2.1" | |
| 114 /Name="input.path1.gene2" | |
| 115 /Note="initial-exon" | |
| 116 /gene="input.path1.gene2" | |
| 117 /phase="0" | |
| 118 /source="GlimmerHMM" | |
| 119 /transl_table=1 | |
| 120 /translation="MVSVRGSEADVAGHLGEDVAVAAVNGPESVVLAGTEDAVLQAAGR | |
| 121 LEAAGHK" | |
| 122 ORIGIN | |
| 123 1 ggggcggcgt gctcgccctg cccgccgagc tggaccgccg cggcggcgac cggctggcgg | |
| 124 61 ctgtgctgtc cggcgccacc ggcgaagacc agctggccat ccgcgccgcc ggcgtgttcg | |
| 125 121 gccgccgcgt ggtgcgggcc ccggccggcg accgcgcgcc ggcgcggacc tggaccccgc | |
| 126 181 gcggcaccac gctgatcacc ggcggcaccg gcaccctggc cccgcacctg gcccgctggc | |
| 127 241 tggccgagca gggcgccgag cacatcgtgc tgaccagccg caccggcgcc gaggccccga | |
| 128 301 aggcccggca gctgctggcg gagctgggcg agaccgtcga ggcggtggcc tgcgacgtca | |
| 129 361 ccgacaaggc ggcgctggcc gccctgctgg cgcggttgcg ggccgagggc cggaccgtgc | |
| 130 421 ggaacgtggt gcacacggcc gccgtgatcg agctgcacac gctggccgag accgacctgg | |
| 131 481 ccgcgttctc ccggaccgtg cacgccaagg tggtgggcgc gcgcaacctg gacgagctgc | |
| 132 541 tcgacaccga cgagctcgat gcgttcgtgc tgtactcctc caccgccggc ctgtggggca | |
| 133 601 ccggcgcgca cgccgcctac gtggccggca acgcgtactt gcacgcgctg gcagcccacc | |
| 134 661 ggcgcgcccg ggggctgcgg gccaccgcgc tgtcgtgggg catctgggcc gacgaccgcg | |
| 135 721 aactcggccg ggtcgacccg gagcagatcg tgcgcagcgg cctggtgttc atggcgccgg | |
| 136 781 agctggcgct ggagggtctg cgccgggccc tggacgacga cgagaccgcg ctggccgtgg | |
| 137 841 ccgatctgga ctgggagcgg tactacccgg tctacaccgc cgtccggccg acgctgctgt | |
| 138 901 tcgacgagct gccggaggtg cggcggctca ccgaggccgc cgccgccacg gccgccaccg | |
| 139 961 gcgccggcgg cgagttcgcc gcccggctgc gcacgctgcc cgaggccgag cgcgcccacc | |
| 140 1021 tgctcctgga actggtccgg gccgaggccg cggccgtgct gggccacgcg tcggccgacg | |
| 141 1081 cgctgcccga ggaccgcgcc ttccgcgacg tcggcttcga ctcggtcacc gcggtcgacc | |
| 142 1141 tgcgcaaccg gatctccgcc ggcaccggcc tgaccctgcc cgccaccatg gtgttcgacc | |
| 143 1201 acccgacgcc gaggcggctg gccgggttcc tggccgccac gatcaccggc tcgggtgccg | |
| 144 1261 tcgagcaggc accggccgtg gccggcgtgg acaccggcga gcccgtcgcc atcatcggga | |
| 145 1321 tggcctgccg ctacccgggt ggcgcgaaca ccccggaacg gttgtgggac ctggtcgtgg | |
| 146 1381 gcggcgtgga cgccatctcc ggcttcccgg ccgaccgcaa ctggccgacc gacgcgctct | |
| 147 1441 acgacccgga cccggacgcc ggcggcaaga cctattcggt gcagggcggc ttcctgcacg | |
| 148 1501 aggcggccga gttcgacccg ggcttcttcg gcatctcgcc gcgggaggca ctgtccatgg | |
| 149 1561 atccgcagca gcgcctgctg ctggagacgg cgtgggaggc gttcgagcgg gccgggatcg | |
| 150 1621 acccgcacac gctgcggggc agcggcaccg gcaccttcat cggggccagc taccaggact | |
| 151 1681 acaccgcggc cgtgtccggc gcggtggaca acgccgacgg ccacatgatc accggctcgc | |
| 152 1741 tgggcagcat cctgtccggc cggctctcct acctgttcgg gctggagggc ccggcggtca | |
| 153 1801 ccctggacac cgcctgctcg tcgtcgctgg tcgccatcca cctggccgcg cagtcgctgc | |
| 154 1861 ggtcggggga gagcagcctg gcgctggccg gcggggtgag cgtgatggcg acgccggggg | |
| 155 1921 cgttcgtcgg cttctcgcgc cagcgcgcac tggccacgga cggccgttgc aaggcctact | |
| 156 1981 cggaccgggc cgacggcatg accctcggcg agggcgtcgg cctggtgctg ctggagaagc | |
| 157 2041 tgtccgacgc gcagcgcaac gggcaccgga tcctggcggt ggtccggggt tcggccacga | |
| 158 2101 accaggacgg cgcgtccaac ggcatgaccg cgcccagcgg cccgtcccag cagcgggtga | |
| 159 2161 tccggcaggc gctggccaac gcgcggctct cggcgtccga ggtggacgtg atcgagggcc | |
| 160 2221 acggcaccgg caccgcgctg ggcgacccga tcgaggccca ggccctgctg gccacctacg | |
| 161 2281 gccaggaccg ggaacggccg ctgctgctcg gctcggtgaa gtccaacatc ggccacaccc | |
| 162 2341 agatggcctc cggcgtggcc ggcgtgatca aggtggtgca ggcgctgcgg cacgggctgg | |
| 163 2401 tacccaagac gctgcacgtg gacgagccct ccacgcacgt cgactggagc accggctcga | |
| 164 2461 tcgagctgcc gtccggcagc gtgccgtggc cggagagcgg ccggccgcgc cgggccggta | |
| 165 2521 tctcgtcctt cgggctgagc ggcacgaacg tgcacaccat cctcgagcag gccccggaac | |
| 166 2581 cggccgccga agccggcccc gagccggagc ccggcctggt gccggtcccg ctgtccggcc | |
| 167 2641 ggacggaagc agcgctgcgc gctcaggccg ccaccgtgct ggacaccctg gacgacggcg | |
| 168 2701 tgtcgccggc cgtgctcggg tactcgctgg cctccacccg gtcggccttc gaacaccgtg | |
| 169 2761 cggtgctgct ggccgaggac cacgacgaac tgcggcgcgg cctggccgca ctggccggcg | |
| 170 2821 accagccgga cggcggcgtg gtgcggggca ccgtgacgcg gggccgcacg gcgttcctgt | |
| 171 2881 tcgccggcca gggcagccag cgggccggga tgggccgcga gctgtacgag cgccacccgg | |
| 172 2941 tgttcgccga cgcgctggac gcggtgctgg ggcacttcga cctgccccgt gcgctgcggg | |
| 173 3001 acgtgatgtg ggacgacgat tccacggccc tcgacgagac ggggtacacc cagccggcgt | |
| 174 3061 tgttcgcctt cgaggtggcg ttgttccggt tgctggagtc gtggggtgtg acgccggatt | |
| 175 3121 acctggccgg gcattcgatc ggtgagatcg ccgcggcgca cgtggccgga gtgttgtcgc | |
| 176 3181 tggccgatgc ctgtgcgttg gtcgctgcgc ggggtgcgct gatgcaggcg ctgccgtccg | |
| 177 3241 gcggggccat ggtttcggtg cgcggctccg aggccgacgt cgccgggcac ctcggcgagg | |
| 178 3301 acgtcgccgt cgcggcggtc aacgggcccg agtcggtggt gctggccggg accgaggacg | |
| 179 3361 cggtgctcca ggcggccggc cgcctggagg ccgccggcca caaggtccgc cgcctgcggg | |
| 180 3421 tcagccacgc cttccactcg cccttgatgg atcccgtgct ggccgagttc gcgacggtgg | |
| 181 3481 ctcagggcct gacctaccac | |
| 182 // |