Mercurial > repos > bgruening > antismash
comparison test-data/harmonize.json @ 5:bc88856eddab draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
author | bgruening |
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date | Tue, 05 Jul 2022 10:37:38 +0000 |
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4:e78e25d3b4bd | 5:bc88856eddab |
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1 [ | |
2 { | |
3 "input_file_name": "ARBH01000003.1", | |
4 "gene_symbol": "mecA_6", | |
5 "gene_name": "mecA", | |
6 "reference_database_id": "resfinder", | |
7 "reference_database_version": 1, | |
8 "reference_accession": "BX571856", | |
9 "analysis_software_name": "abricate", | |
10 "analysis_software_version": 0.5, | |
11 "sequence_identity": 100, | |
12 "input_sequence_id": "ARBH01000003.1", | |
13 "input_protein_start": null, | |
14 "input_protein_stop": null, | |
15 "input_gene_start": 2, | |
16 "input_gene_stop": 3500, | |
17 "reference_protein_start": null, | |
18 "reference_protein_stop": null, | |
19 "reference_gene_start": null, | |
20 "reference_gene_stop": null, | |
21 "strand_orientation": "-", | |
22 "coverage_depth": null, | |
23 "coverage_percentage": 100, | |
24 "coverage_ratio": null, | |
25 "reference_gene_length": null, | |
26 "reference_protein_length": null, | |
27 "input_gene_length": null, | |
28 "input_protein_length": null, | |
29 "drug_class": "Amoxicillin;Amoxicillin+Clavulanic_acid;Ampicillin;Ampicillin+Clavulanic_acid;Cefepime;Cefixime;Cefotaxime;Cefoxitin;Ceftazidime;Ertapenem;Imipenem;Meropenem;Piperacillin;Piperacillin+Tazobactam", | |
30 "antimicrobial_agent": null, | |
31 "resistance_mechanism": null | |
32 }, | |
33 { | |
34 "input_file_name": "ARBH01000003.1", | |
35 "gene_symbol": "mecA", | |
36 "gene_name": "mecA", | |
37 "reference_database_id": "resfinder", | |
38 "reference_database_version": 1, | |
39 "reference_accession": "BX571856", | |
40 "analysis_software_name": "staramr", | |
41 "analysis_software_version": 0.5, | |
42 "sequence_identity": 100, | |
43 "input_sequence_id": "ARBH01000003.1", | |
44 "input_protein_start": null, | |
45 "input_protein_stop": null, | |
46 "input_gene_start": 2, | |
47 "input_gene_stop": 3500, | |
48 "reference_protein_start": null, | |
49 "reference_protein_stop": null, | |
50 "reference_gene_start": null, | |
51 "reference_gene_stop": null, | |
52 "strand_orientation": null, | |
53 "coverage_depth": null, | |
54 "coverage_percentage": 100, | |
55 "coverage_ratio": 1, | |
56 "reference_gene_length": null, | |
57 "reference_protein_length": null, | |
58 "input_gene_length": null, | |
59 "input_protein_length": null, | |
60 "drug_class": "unknown[mecA_6_BX571856]", | |
61 "antimicrobial_agent": null, | |
62 "resistance_mechanism": null | |
63 } | |
64 ] |