--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/harmonize2antismash.py	Tue Jul 05 10:37:38 2022 +0000
@@ -0,0 +1,50 @@
+#!/usr/bin/env python
+import json
+import sys
+
+
+output = {
+    "tool": {
+        "name": "hAMRonize",
+        "version": "?",
+        "description": "Tool for combining results",
+        "configuration": {
+            "verbose": "true", "multisetting": ["first", "second"]
+        },
+    },
+    "records": [],
+}
+
+with open(sys.argv[1], "r") as handle:
+    records = json.load(handle)
+
+    for i in records:
+        start = i["input_gene_start"]
+        end = i["input_gene_stop"]
+        label = i["gene_name"]
+        seqid = i["input_sequence_id"]
+
+        score = i["sequence_identity"]
+        if start <= end:
+            fstart = start - 1
+            fend = end
+        else:
+            fstart = end - 1
+            fend = start
+
+        record = {
+            "name": seqid,
+            "subregions": [
+                {
+                    "start": fstart,
+                    "end": fend,
+                    "label": label,
+                    "details": {"score": str(score)},
+                }
+            ],
+        }
+        output["records"].append(record)
+
+
+with open(sys.argv[2], "w") as handle:
+    json.dump(output, handle, indent=2)