Mercurial > repos > bgruening > antismash

diff test-data/harmonize.json @ 5:bc88856eddab draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/antismash commit dc45770442ff516d6f3733e4bdb284be3163de67
author bgruening
date Tue, 05 Jul 2022 10:37:38 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/harmonize.json	Tue Jul 05 10:37:38 2022 +0000
@@ -0,0 +1,64 @@
+[
+  {
+    "input_file_name": "ARBH01000003.1",
+    "gene_symbol": "mecA_6",
+    "gene_name": "mecA",
+    "reference_database_id": "resfinder",
+    "reference_database_version": 1,
+    "reference_accession": "BX571856",
+    "analysis_software_name": "abricate",
+    "analysis_software_version": 0.5,
+    "sequence_identity": 100,
+    "input_sequence_id": "ARBH01000003.1",
+    "input_protein_start": null,
+    "input_protein_stop": null,
+    "input_gene_start": 2,
+    "input_gene_stop": 3500,
+    "reference_protein_start": null,
+    "reference_protein_stop": null,
+    "reference_gene_start": null,
+    "reference_gene_stop": null,
+    "strand_orientation": "-",
+    "coverage_depth": null,
+    "coverage_percentage": 100,
+    "coverage_ratio": null,
+    "reference_gene_length": null,
+    "reference_protein_length": null,
+    "input_gene_length": null,
+    "input_protein_length": null,
+    "drug_class": "Amoxicillin;Amoxicillin+Clavulanic_acid;Ampicillin;Ampicillin+Clavulanic_acid;Cefepime;Cefixime;Cefotaxime;Cefoxitin;Ceftazidime;Ertapenem;Imipenem;Meropenem;Piperacillin;Piperacillin+Tazobactam",
+    "antimicrobial_agent": null,
+    "resistance_mechanism": null
+  },
+  {
+    "input_file_name": "ARBH01000003.1",
+    "gene_symbol": "mecA",
+    "gene_name": "mecA",
+    "reference_database_id": "resfinder",
+    "reference_database_version": 1,
+    "reference_accession": "BX571856",
+    "analysis_software_name": "staramr",
+    "analysis_software_version": 0.5,
+    "sequence_identity": 100,
+    "input_sequence_id": "ARBH01000003.1",
+    "input_protein_start": null,
+    "input_protein_stop": null,
+    "input_gene_start": 2,
+    "input_gene_stop": 3500,
+    "reference_protein_start": null,
+    "reference_protein_stop": null,
+    "reference_gene_start": null,
+    "reference_gene_stop": null,
+    "strand_orientation": null,
+    "coverage_depth": null,
+    "coverage_percentage": 100,
+    "coverage_ratio": 1,
+    "reference_gene_length": null,
+    "reference_protein_length": null,
+    "input_gene_length": null,
+    "input_protein_length": null,
+    "drug_class": "unknown[mecA_6_BX571856]",
+    "antimicrobial_agent": null,
+    "resistance_mechanism": null
+  }
+]