--- a/test-data/ARBH01000003.1.cluster001	Sun Aug 09 10:15:12 2020 -0400
+++ b/test-data/ARBH01000003.1.cluster001	Tue May 31 14:04:07 2022 +0000
@@ -3,11 +3,80 @@
             A3CEDRAFT_scaffold1.1_C3, whole genome shotgun sequence.
 ACCESSION   ARBH01000003
 VERSION     ARBH01000003.1
-KEYWORDS    .
+DBLINK      BioProject: PRJNA165347
+            BioSample: SAMN02256403
+KEYWORDS    WGS; GSC:MIGS:2.1; IMPROVED_HIGH_QUALITY_DRAFT.
 SOURCE      Amycolatopsis balhimycina FH 1894
   ORGANISM  Amycolatopsis balhimycina FH 1894
             Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae;
             Amycolatopsis.
+REFERENCE   1  (bases 1 to 3500)
+  AUTHORS   Klenk,H.-P., Huntemann,M., Han,J., Chen,A., Kyrpides,N.,
+            Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N.,
+            Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N.,
+            Hua,S.X. and Woyke,T.
+  TITLE     Direct Submission
+  JOURNAL   Submitted (16-APR-2013) DOE Joint Genome Institute, 2800 Mitchell
+            Drive, Walnut Creek, CA 94598-1698, USA
+COMMENT     ##MIGS-Data-START##
+            investigation_type       :: bacteria_archaea
+            project_name             :: Amycolatopsis balhimycina DSM 44591
+            collection_date          :: Missing
+            lat_lon                  :: Missing
+            depth                    :: Missing
+            alt_elev                 :: Missing
+            country                  :: India
+            num_replicons            :: Missing
+            ref_biomaterial          :: DSM 44591
+            biotic_relationship      :: Free living
+            rel_to_oxygen            :: Aerobe
+            isol_growth_condt        :: Missing
+            assembly :: Velvet v. 1.1.05; ALLPATHS v. r38445; Phrap v. 4.24
+            finishing_strategy       :: Missing
+            environment              :: Soil
+            trophic_level            :: Missing
+            sequencing_meth          :: WGS
+            GOLD Stamp ID            :: Gi10728
+            Type Strain              :: Yes
+            Funding Program          :: DOE-CSP 2011
+            Isolation Site           :: Soil
+            Cell Shape               :: Filament-shaped
+            Motility                 :: Nonmotile
+            Sporulation              :: Sporulating
+            Temperature Range        :: Mesophile
+            Gram Staining            :: Gram+
+            Diseases                 :: None
+            ##MIGS-Data-END##
+            ##Genome-Assembly-Data-START##
+            Finishing Goal           :: Improved High-Quality Draft
+            Current Finishing Status :: Improved High-Quality Draft
+            Assembly Method :: Velvet v. 1.1.05; ALLPATHS v. r38445; Phrap v.
+            4.24
+            Genome Coverage          :: Unknown
+            Sequencing Technology    :: Illumina GAii
+            ##Genome-Assembly-Data-END##
+            URL -- http://www.jgi.doe.gov
+            JGI Project ID: 404843
+            Source DNA and Organism available from Hans-Peter  Klenk
+            (hpk@dsmz.de)
+            Source DNA available from Hans-Peter  Klenk (hpk@dsmz.de)
+            Organism available from Hans-Peter  Klenk (hpk@dsmz.de)
+            Contacts: Hans-Peter  Klenk (hpk@dsmz.de)
+            Tanja Woyke (microbe@cuba.jgi-psf.org)
+            Whole genome sequencing and draft assembly at JGI-PGF
+            Annotation by JGI-ORNL
+            The JGI and collaborators endorse the principles for the
+            distribution and use of large scale sequencing data adopted by the
+            larger genome sequencing community and urge users of this data to
+            follow them. It is our intention to publish the work of this
+            project in a timely fashion and we welcome collaborative
+            interaction on the project and analysis.
+            (http://www.genome.gov/page.cfm?pageID=10506376)
+            Full annotations are available from IMG.
+            ##antiSMASH-Data-START##
+            Version      :: 6.1.0
+            Run date     :: 2022-05-03 16:47:32
+            ##antiSMASH-Data-END##
 FEATURES             Location/Qualifiers
      source          1..3500
                      /culture_collection="DSM:44591"
@@ -15,237 +84,41 @@
                      /mol_type="genomic DNA"
                      /organism="Amycolatopsis balhimycina FH 1894"
                      /strain="DSM 44591"
-     cluster         1..3500
-                     /contig_edge="True"
-                     /cutoff=20000
-                     /extension=20000
-                     /note="Cluster number: 1"
-                     /note="Detection rule(s) for this cluster type: t1pks:
-                     ((PKS_KS & PKS_AT) or (ene_KS & PKS_AT) or (mod_KS &
-                     PKS_AT) or (hyb_KS & PKS_AT) or (itr_KS & PKS_AT) or
-                     (tra_KS & PKS_AT));"
-                     /note="Monomers prediction: (mal)"
-                     /note="Structure image: structures/genecluster1.png"
-                     /product="t1pks"
-     CDS             3..3500
-                     /aSProdPred="mal"
-                     /locus_tag="ctg1_1"
-                     /note="smCOG:
-                     SMCOG1001:short-chain_dehydrogenase/reductase_SDR (Score:
-                     64.2; E-value: 2.2e-19);"
-                     /sec_met="Type: t1pks"
-                     /sec_met="Domains detected: PP-binding (E-value: 1.3e-15,
-                     bitscore: 44.0, seeds: 164); PKS_AT (E-value: 8.7e-82,
-                     bitscore: 260.9, seeds: 1682); mod_KS (E-value: 9.4e-224,
-                     bitscore: 729.0, seeds: 217); adh_short (E-value: 7.1e-52,
-                     bitscore: 162.1, seeds: 230)"
-                     /sec_met="Kind: biosynthetic"
-                     /sec_met="NRPS/PKS subtype: Type I Modular PKS"
-                     /sec_met="NRPS/PKS Domain: PKS_KR (60-237). E-value:
-                     1.4e-53. Score: 173.1; Predicted KR activity: active;
-                     Predicted KR stereochemistry: A2;"
-                     /sec_met="NRPS/PKS Domain: ACP (341-412). E-value: 7.8e-31.
-                     Score: 97.8;"
-                     /sec_met="NRPS/PKS Domain: PKS_KS (434-858). E-value:
-                     3e-179. Score: 587.9;"
-                     /sec_met="NRPS/PKS Domain: PKS_AT (958-1166). E-value:
-                     4e-80. Score: 260.9; Substrate specificity predictions: mal
-                     (PKS signature), mal (Minowa), mal (consensus);"
-                     /translation="GGVLALPAELDRRGGDRLAAVLSGATGEDQLAIRAAGVFGRRVVR
-                     APAGDRAPARTWTPRGTTLITGGTGTLAPHLARWLAEQGAEHIVLTSRTGAEAPKARQL
-                     LAELGETVEAVACDVTDKAALAALLARLRAEGRTVRNVVHTAAVIELHTLAETDLAAFS
-                     RTVHAKVVGARNLDELLDTDELDAFVLYSSTAGLWGTGAHAAYVAGNAYLHALAAHRRA
-                     RGLRATALSWGIWADDRELGRVDPEQIVRSGLVFMAPELALEGLRRALDDDETALAVAD
-                     LDWERYYPVYTAVRPTLLFDELPEVRRLTEAAAATAATGAGGEFAARLRTLPEAERAHL
-                     LLELVRAEAAAVLGHASADALPEDRAFRDVGFDSVTAVDLRNRISAGTGLTLPATMVFD
-                     HPTPRRLAGFLAATITGSGAVEQAPAVAGVDTGEPVAIIGMACRYPGGANTPERLWDLV
-                     VGGVDAISGFPADRNWPTDALYDPDPDAGGKTYSVQGGFLHEAAEFDPGFFGISPREAL
-                     SMDPQQRLLLETAWEAFERAGIDPHTLRGSGTGTFIGASYQDYTAAVSGAVDNADGHMI
-                     TGSLGSILSGRLSYLFGLEGPAVTLDTACSSSLVAIHLAAQSLRSGESSLALAGGVSVM
-                     ATPGAFVGFSRQRALATDGRCKAYSDRADGMTLGEGVGLVLLEKLSDAQRNGHRILAVV
-                     RGSATNQDGASNGMTAPSGPSQQRVIRQALANARLSASEVDVIEGHGTGTALGDPIEAQ
-                     ALLATYGQDRERPLLLGSVKSNIGHTQMASGVAGVIKVVQALRHGLVPKTLHVDEPSTH
-                     VDWSTGSIELPSGSVPWPESGRPRRAGISSFGLSGTNVHTILEQAPEPAAEAGPEPEPG
-                     LVPVPLSGRTEAALRAQAATVLDTLDDGVSPAVLGYSLASTRSAFEHRAVLLAEDHDEL
-                     RRGLAALAGDQPDGGVVRGTVTRGRTAFLFAGQGSQRAGMGRELYERHPVFADALDAVL
-                     GHFDLPRALRDVMWDDDSTALDETGYTQPALFAFEVALFRLLESWGVTPDYLAGHSIGE
-                     IAAAHVAGVLSLADACALVAARGALMQALPSGGAMVSVRGSEADVAGHLGEDVAVAAVN
-                     GPESVVLAGTEDAVLQAAGRLEAAGHKVRRLRVSHAFHSPLMDPVLAEFATVAQGLTYH
-                     "
-     aSDomain        183..713
-                     /asDomain_id="nrpspksdomains_ctg1_1_KR1"
-                     /database="nrpspksdomains.hmm"
-                     /detection="hmmscan"
-                     /domain="PKS_KR"
-                     /evalue="1.40E-53"
-                     /label="ctg1_1_KR1"
-                     /locus_tag="ctg1_1"
-                     /score="173.1"
-                     /specificity="KR activity: active"
-                     /specificity="KR stereochemistry: A2"
-                     /translation="GTTLITGGTGTLAPHLARWLAEQGAEHIVLTSRTGAEAPKARQLL
-                     AELGETVEAVACDVTDKAALAALLARLRAEGRTVRNVVHTAAVIELHTLAETDLAAFSR
-                     TVHAKVVGARNLDELLDTDELDAFVLYSSTAGLWGTGAHAAYVAGNAYLHALAAHRRAR
-                     GLRATALSWGIWAD"
-     CDS_motif       192..284
-                     /aSTool="pksnrpsmotif"
-                     /asDomain_id="nrpspksmotif_ctg1_1_0001"
-                     /database="abmotifs"
-                     /detection="hmmscan"
-                     /evalue="3.80E-15"
-                     /label="PKSI-KR_m1"
-                     /locus_tag="ctg1_1"
-                     /motif="PKSI-KR_m1"
-                     /note="NRPS/PKS Motif: PKSI-KR_m1 (e-value: 3.8e-15,
-                     bit-score: 48.4)"
-                     /score="48.4"
-                     /translation="LITGGTGTLAPHLARWLAEQGAEHIVLTSRT"
-     CDS_motif       555..665
-                     /aSTool="pksnrpsmotif"
-                     /asDomain_id="nrpspksmotif_ctg1_1_0002"
-                     /database="abmotifs"
-                     /detection="hmmscan"
-                     /evalue="1.60E-14"
-                     /label="PKSI-KR_m4"
-                     /locus_tag="ctg1_1"
-                     /motif="PKSI-KR_m4"
-                     /note="NRPS/PKS Motif: PKSI-KR_m4 (e-value: 1.6e-14,
-                     bit-score: 46.4)"
-                     /score="46.4"
-                     /translation="LDAFVLYSSTAGLWGTGAHAAYVAGNAYLHALAAHRR"
-     aSDomain        1026..1238
-                     /asDomain_id="nrpspksdomains_ctg1_1_Xdom01"
-                     /database="nrpspksdomains.hmm"
-                     /detection="hmmscan"
-                     /domain="ACP"
-                     /evalue="7.80E-31"
-                     /locus_tag="ctg1_1"
-                     /score="97.8"
-                     /translation="LELVRAEAAAVLGHASADALPEDRAFRDVGFDSVTAVDLRNRISA
-                     GTGLTLPATMVFDHPTPRRLAGFLAA"
-     aSDomain        1305..2576
-                     /asDomain_id="nrpspksdomains_ctg1_1_Xdom02"
-                     /database="nrpspksdomains.hmm"
-                     /detection="hmmscan"
-                     /domain="PKS_KS"
-                     /evalue="3.00E-179"
-                     /locus_tag="ctg1_1"
-                     /score="587.9"
-                     /translation="VAIIGMACRYPGGANTPERLWDLVVGGVDAISGFPADRNWPTDAL
-                     YDPDPDAGGKTYSVQGGFLHEAAEFDPGFFGISPREALSMDPQQRLLLETAWEAFERAG
-                     IDPHTLRGSGTGTFIGASYQDYTAAVSGAVDNADGHMITGSLGSILSGRLSYLFGLEGP
-                     AVTLDTACSSSLVAIHLAAQSLRSGESSLALAGGVSVMATPGAFVGFSRQRALATDGRC
-                     KAYSDRADGMTLGEGVGLVLLEKLSDAQRNGHRILAVVRGSATNQDGASNGMTAPSGPS
-                     QQRVIRQALANARLSASEVDVIEGHGTGTALGDPIEAQALLATYGQDRERPLLLGSVKS
-                     NIGHTQMASGVAGVIKVVQALRHGLVPKTLHVDEPSTHVDWSTGSIELPSGSVPWPESG
-                     RPRRAGISSFGLSGTNVHTILEQAP"
-     CDS_motif       1788..1835
-                     /aSTool="pksnrpsmotif"
-                     /asDomain_id="nrpspksmotif_ctg1_1_0003"
-                     /database="abmotifs"
-                     /detection="hmmscan"
-                     /evalue="2.00E-06"
-                     /label="PKSI-KS_m3"
-                     /locus_tag="ctg1_1"
-                     /motif="PKSI-KS_m3"
-                     /note="NRPS/PKS Motif: PKSI-KS_m3 (e-value: 2e-06,
-                     bit-score: 19.7)"
-                     /score="19.7"
-                     /translation="GPAVTLDTACSSSLVA"
-     CDS_motif       2211..2255
-                     /aSTool="pksnrpsmotif"
-                     /asDomain_id="nrpspksmotif_ctg1_1_0004"
-                     /database="abmotifs"
-                     /detection="hmmscan"
-                     /evalue="1.90E-03"
-                     /label="PKSI-KS_m5"
-                     /locus_tag="ctg1_1"
-                     /motif="PKSI-KS_m5"
-                     /note="NRPS/PKS Motif: PKSI-KS_m5 (e-value: 0.0019,
-                     bit-score: 10.8)"
-                     /score="10.8"
-                     /translation="IEGHGTGTALGDPIE"
-     CDS_motif       2310..2354
-                     /aSTool="pksnrpsmotif"
-                     /asDomain_id="nrpspksmotif_ctg1_1_0005"
-                     /database="abmotifs"
-                     /detection="hmmscan"
-                     /evalue="1.10E-03"
-                     /label="PKSI-KS_m6"
-                     /locus_tag="ctg1_1"
-                     /motif="PKSI-KS_m6"
-                     /note="NRPS/PKS Motif: PKSI-KS_m6 (e-value: 0.0011,
-                     bit-score: 11.5)"
-                     /score="11.5"
-                     /translation="GSVKSNIGHTQMASG"
-     CDS_motif       2874..2927
-                     /aSTool="pksnrpsmotif"
-                     /asDomain_id="nrpspksmotif_ctg1_1_0006"
-                     /database="abmotifs"
-                     /detection="hmmscan"
-                     /evalue="2.30E-06"
-                     /label="PKSI-AT-mM_m1"
-                     /locus_tag="ctg1_1"
-                     /motif="PKSI-AT-mM_m1"
-                     /note="NRPS/PKS Motif: PKSI-AT-mM_m1 (e-value: 2.3e-06,
-                     bit-score: 19.8)"
-                     /score="19.8"
-                     /translation="FLFAGQGSQRAGMGRELY"
-     aSDomain        2877..3500
-                     /asDomain_id="nrpspksdomains_ctg1_1_AT1"
-                     /database="nrpspksdomains.hmm"
-                     /detection="hmmscan"
-                     /domain="PKS_AT"
-                     /evalue="4.00E-80"
-                     /label="ctg1_1_AT1"
-                     /locus_tag="ctg1_1"
-                     /score="260.9"
-                     /specificity="PKS signature: mal"
-                     /specificity="Minowa: mal"
-                     /specificity="consensus: mal"
-                     /translation="LFAGQGSQRAGMGRELYERHPVFADALDAVLGHFDLPRALRDVMW
-                     DDDSTALDETGYTQPALFAFEVALFRLLESWGVTPDYLAGHSIGEIAAAHVAGVLSLAD
-                     ACALVAARGALMQALPSGGAMVSVRGSEADVAGHLGEDVAVAAVNGPESVVLAGTEDAV
-                     LQAAGRLEAAGHKVRRLRVSHAFHSPLMDPVLAEFATVAQGLTYH"
-     CDS_motif       3033..3095
-                     /aSTool="pksnrpsmotif"
-                     /asDomain_id="nrpspksmotif_ctg1_1_0007"
-                     /database="abmotifs"
-                     /detection="hmmscan"
-                     /evalue="3.20E-03"
-                     /label="PKSI-AT-mM_m2"
-                     /locus_tag="ctg1_1"
-                     /motif="PKSI-AT-mM_m2"
-                     /note="NRPS/PKS Motif: PKSI-AT-mM_m2 (e-value: 0.0032,
-                     bit-score: 10.9)"
-                     /score="10.9"
-                     /translation="DETGYTQPALFAFEVALFRLL"
-     CDS_motif       3105..3227
-                     /aSTool="pksnrpsmotif"
-                     /asDomain_id="nrpspksmotif_ctg1_1_0008"
-                     /database="abmotifs"
-                     /detection="hmmscan"
-                     /evalue="2.30E-22"
-                     /label="PKSI-AT-M_m3"
-                     /locus_tag="ctg1_1"
-                     /motif="PKSI-AT-M_m3"
-                     /note="NRPS/PKS Motif: PKSI-AT-M_m3 (e-value: 2.3e-22,
-                     bit-score: 71.3)"
-                     /score="71.3"
-                     /translation="GVTPDYLAGHSIGEIAAAHVAGVLSLADACALVAARGALMQ"
-     CDS_motif       3312..3350
-                     /aSTool="pksnrpsmotif"
-                     /asDomain_id="nrpspksmotif_ctg1_1_0009"
-                     /database="abmotifs"
-                     /detection="hmmscan"
-                     /evalue="4.70E-04"
-                     /label="PKSI-AT-M_m5"
-                     /locus_tag="ctg1_1"
-                     /motif="PKSI-AT-M_m5"
-                     /note="NRPS/PKS Motif: PKSI-AT-M_m5 (e-value: 0.00047,
-                     bit-score: 13.4)"
-                     /score="13.4"
-                     /translation="AAVNGPESVVLAG"
+     CDS             complement(170..3134)
+                     /ID="input.cds1.1"
+                     /Name="input.path1.gene1"
+                     /Note="initial-exon"
+                     /gene="input.path1.gene1"
+                     /phase="0"
+                     /source="GlimmerHMM"
+                     /transl_table=1
+                     /translation="MPGQVIRRHTPRLQQPEQRHLEGEQRRLGVPRLVEGRGIVVPHHV
+                     PQRTGQVEVPQHRVQRVGEHRVALVQLAAHPGPLAALAGEQERRAAPRHGAPHHAAVRL
+                     VAGQCGQAAPQFVVVLGQQHRTVFEGRPGGGQRVPEHGRRHAVVQGVQHGGGLSAQRCF
+                     RPAGQRDRHQAGLRLGAGFGGRFRGLLEDGVHVRAAQPEGRDTGPARPAALRPRHAAGR
+                     QLDRAGAPVDVRGGLVHVQRLGYQPVPQRLHHLDHAGHAGGHLGVADVGLHRAEQQRPF
+                     PVLAVGGQQGLGLDRVAQRGAGAVALDHVHLGRREPRVGQRLPDHPLLGRAAGRGHAVG
+                     RAVLVRGRTPDHRQDPVPVALRVGQLLQQHQADALAEGHAVGPVRVGLATAVRGQCALA
+                     READERPRRRHHAHPAGQRQAALPRPQRLRGQVDGDQRRRAGGVQGDRRALQPEQVGEP
+                     AGQDAAQRAGDHVAVGVVHRAGHGRGVVLVAGPDEGAGAAAPQRVRVDPGPLERLPRRL
+                     QQQALLRIHGQCLPRRDAEEARVELGRLVQEAALHRIGLAAGVRVRVVERVGRPVAVGR
+                     EAGDGVHAAHDQVPQPFRGVRATRVAAGHPDDGDGLAGVHAGHGRCLLDGTRAGDRGGQ
+                     EPGQPPRRRVVEHHGGGQGQAGAGGDPVAQVDRGDRVEADVAEGAVLGQRVGRRVAQHG
+                     RGLGPDQFQEQVGALGLGQRAQPGGELAAGAGGGRGGGGLGEPPHLRQLVEQQRRPDGG
+                     VDRVVPLPVQIGHGQRGLVVVQGPAQTLQRQLRRHEHQAAAHDLLRVDPAEFAVVGPDA
+                     PRQRGGPQPPGAPVGCQRVQVRVAGHVGGVRAGAPQAGGGGVQHERIELVGVEQLVQVA
+                     RAHHLGVHGPGERGQVGLGQRVQLDHGGRVHHVPHGPALGPQPRQQGGQRRLVGDVAGH
+                     RLDGLAQLRQQLPGLRGLGAGAAGQHDVLGALLGQPAGQVRGQGAGAAGDQRGAARGP"
+     CDS             3249..3404
+                     /ID="input.cds2.1"
+                     /Name="input.path1.gene2"
+                     /Note="initial-exon"
+                     /gene="input.path1.gene2"
+                     /phase="0"
+                     /source="GlimmerHMM"
+                     /transl_table=1
+                     /translation="MVSVRGSEADVAGHLGEDVAVAAVNGPESVVLAGTEDAVLQAAGR
+                     LEAAGHK"
 ORIGIN
         1 ggggcggcgt gctcgccctg cccgccgagc tggaccgccg cggcggcgac cggctggcgg
        61 ctgtgctgtc cggcgccacc ggcgaagacc agctggccat ccgcgccgcc ggcgtgttcg