Galaxy wrapper for AntiSmash
=====================================

This wrapper is copyright 2012-2014 by Björn Grüning.

This is a wrapper for the command line tool of antiSMASH.

antiSMASH allows the rapid genome-wide identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genomes.
It integrates and cross-links with a large number of in silico secondary metabolite analysis tools.

http://antismash.secondarymetabolites.org/

Marnix H. Medema, Kai Blin, Peter Cimermancic, Victor de Jager, Piotr Zakrzewski, Michael A. Fischbach, Tilmann Weber, Rainer Breitling & Eriko Takano (2011).
antiSMASH: Rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters. Nucleic Acids Research 39: W339-W346.


Installation
============

Galaxy should be able to automatically install the dependencies, i.e. the
'package_hmmer_3_0' or 'package_blast_plus_2_2_28' repository.

You must tell Galaxy about any system level Pfam databases using the configuration
file antismash.loc.

You can download the Pfam provided databases as compressed archives from here:

* ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/


External Data
=============

The antismash.loc file contains the path to a Pfam database.
For any other tool that also uses a Pfam database *.log file, you can sync or link both *.loc files.



History
=======

v0.1 - Initial public release


Licence (MIT)
=============

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The above copyright notice and this permission notice shall be included in
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