Mercurial > repos > bgruening > augustus

comparison augustus.xml @ 6:ca6d970d931c draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 211061259f97dfbeb080aaf4713a21f64a1742e1"
author iuc
date Fri, 20 Dec 2019 14:08:53 -0500
parents b3f5d0879dab
children 09855551d713
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5:b3f5d0879dab 6:ca6d970d931c
8 <![CDATA[ 8 <![CDATA[
9 #if $model.augustus_mode == 'history' 9 #if $model.augustus_mode == 'history'
10 10
11 ## Using an augustus model from history, we need to unzip it and let augustus find it 11 ## Using an augustus model from history, we need to unzip it and let augustus find it
12 12
13 cp -r "\$AUGUSTUS_CONFIG_PATH/" augustus_dir/ && 13 cp -r `command -v augustus | xargs dirname`/../config/ augustus_dir/ &&
14 14
15 mkdir -p 'augustus_dir/species/' && 15 mkdir -p 'augustus_dir/species/' &&
16 16
17 tar -C 'augustus_dir/species/' -xzvf '${model.custom_model}' > /dev/null && 17 tar -C 'augustus_dir/species/' -xzvf '${model.custom_model}' > /dev/null &&
18 18