--- a/test-data/human_augustus_protein_codingseq_introns_cds_main.gtf	Thu May 23 18:17:05 2019 -0400
+++ b/test-data/human_augustus_protein_codingseq_introns_cds_main.gtf	Fri Dec 20 14:08:53 2019 -0500
@@ -1,19 +1,17 @@
-# This output was generated with AUGUSTUS (version 3.2.3).
+# This output was generated with AUGUSTUS (version 3.3.3).
 # AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
-# O. Keller, S. König, L. Gerischer and L. Romoth.
+# O. Keller, S. König, L. Gerischer, L. Romoth and Katharina Hoff.
 # Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
 # Using native and syntenically mapped cDNA alignments to improve de novo gene finding
 # Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
 # No extrinsic information on sequences given.
-# Initialising the parameters using config directory /home/bag/projects/code/galaxy/tool_deps/augustus/3.1/iuc/package_augustus_3_1/820bf3789c44/config/ ...
+# Initializing the parameters using config directory /home/abretaud/miniconda3/envs/__augustus@3.3.3/config/ ...
 # human version. Using default transition matrix.
-# Looks like /tmp/tmpboMLLQ/job_working_directory/000/6/task_0/dataset_9.dat is in fasta format.
+# Looks like /tmp/tmpTS0N1X/files/b/e/5/dataset_be5ee0f6-7fb0-4170-9543-17032878de48.dat is in fasta format.
 # We have hints for 0 sequences and for 0 of the sequences in the input set.
 #
 # ----- prediction on sequence number 1 (length = 9453, name = HS04636) -----
 #
-# Constraints/Hints:
-# (none)
 # Predicted genes for sequence number 1 on both strands
 # start gene HS04636.g1
 HS04636	AUGUSTUS	gene	966	6903	1	+	.	HS04636.g1
@@ -70,8 +68,6 @@
 #
 # ----- prediction on sequence number 2 (length = 2344, name = HS08198) -----
 #
-# Constraints/Hints:
-# (none)
 # Predicted genes for sequence number 2 on both strands
 # start gene HS08198.g2
 HS08198	AUGUSTUS	gene	445	1848	1	+	.	HS08198.g2
@@ -102,4 +98,4 @@
 # end gene HS08198.g2
 ###
 # command line:
-# augustus --strand=both --noInFrameStop=false --gff3=off --uniqueGeneId=true --protein=on --codingseq=on --introns=on --start=on --stop=on --cds=on --singlestrand=false /tmp/tmpboMLLQ/job_working_directory/000/6/task_0/dataset_9.dat --UTR=off --genemodel=complete --species=human
+# augustus --strand=both --noInFrameStop=false --gff3=off --uniqueGeneId=true --protein=on --codingseq=on --introns=on --start=on --stop=on --cds=on --singlestrand=false /tmp/tmpTS0N1X/files/b/e/5/dataset_be5ee0f6-7fb0-4170-9543-17032878de48.dat --UTR=off --genemodel=complete --species=human