Mercurial > repos > bgruening > augustus_training

annotate test-data/augustus.hints_and_range.output.gtf @ 2:0d425a4b6896 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
author iuc
date Thu, 23 May 2019 18:17:22 -0400
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children 6519ebe25019
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0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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1 # This output was generated with AUGUSTUS (version 3.2.3).
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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2 # AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de),
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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3 # O. Keller, S. König, L. Gerischer and L. Romoth.
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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4 # Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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5 # Using native and syntenically mapped cDNA alignments to improve de novo gene finding
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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6 # Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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7 # Sources of extrinsic information: M RM E W
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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8 # Setting CDSpart local malus: 0.985
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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9 # Setting UTRpart local malus: 0.973
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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10 # reading in the file /private/var/folders/2d/g1vdzd1n6fv1fgxtlx8vrb189nw7dq/T/tmpsUsEy3/files/000/dataset_18.dat ...
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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11 # Have extrinsic information about 1 sequences (in the specified range).
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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12 # Initialising the parameters using config directory /Users/sargentl/miniconda3/envs/__augustus@3.2.3/config/ ...
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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13 # fly version. Using default transition matrix.
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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14 # Looks like /private/var/folders/2d/g1vdzd1n6fv1fgxtlx8vrb189nw7dq/T/tmpsUsEy3/files/000/dataset_17.dat is in fasta format.
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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15 # We have hints for 1 sequence and for 1 of the sequences in the input set.
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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16 #
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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17 # ----- prediction on sequence number 1 (length = 2001, name = chr2R) -----
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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18 #
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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19 # Delete group HintGroup gi|2701440, 1631-1865, mult= 1, priority= 4 4 features
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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20 # Delete group HintGroup gi|4203815, 1631-1865, mult= 1, priority= 4 4 features
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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21 # Delete group HintGroup gi|4245769, 1631-1865, mult= 1, priority= 4 4 features
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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22 # Delete group HintGroup gi|4245770, 1631-1865, mult= 1, priority= 4 4 features
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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23 # Delete group HintGroup gi|13769068, 1631-1865, mult= 1, priority= 4 4 features
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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24 # Delete group HintGroup gi|14693753, 1631-1865, mult= 1, priority= 4 4 features
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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25 # Delete group HintGroup gi|14695912, 1631-1865, mult= 1, priority= 4 4 features
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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26 # Delete group HintGroup gi|14699170, 1631-1865, mult= 1, priority= 4 4 features
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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27 # Delete group HintGroup gi|14700619, 1631-1865, mult= 1, priority= 4 4 features
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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28 # Delete group HintGroup gi|15539951, 1631-1865, mult= 1, priority= 4 4 features
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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29 # Delete group HintGroup gi|15543927, 1631-1865, mult= 1, priority= 4 4 features
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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30 # Delete group HintGroup gi|38623822, 1631-1865, mult= 1, priority= 4 4 features
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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31 # Delete group HintGroup SRR023546.8642467/1, 1631-1694, mult= 1, priority= 4 2 features
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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32 # Delete group HintGroup gi|2871896, 1812-1865, mult= 1, priority= 4 2 features
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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33 # Delete group HintGroup gi|15543159, 1812-1865, mult= 1, priority= 4 2 features
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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34 # Delete group HintGroup , 1812-1865, mult= 8, priority= 4 1 features
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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35 # Delete group HintGroup , 1812-1865, mult= 8, priority= 4 1 features
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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36 # Deleted 17 groups because some hint was not satisfiable.
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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37 # Constraints/Hints:
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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38 chr2R w2h ep 7551 7560 5.3 . . mult=5;src=W "1.03743;0.992;9:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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39 chr2R w2h ep 7561 7570 7.4 . . mult=7;src=W "1.05617;0.992;13:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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40 chr2R w2h ep 7571 7580 9.7 . . mult=9;src=W "1.07589;0.992;17:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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41 chr2R w2h ep 7581 7590 10.2 . . mult=10;src=W "1.08606;0.992;19:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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42 chr2R w2h ep 7591 7600 9 . . mult=9;src=W "1.07589;0.992;17:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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43 chr2R w2h ep 7601 7610 9.7 . . mult=9;src=W "1.07589;0.992;17:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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44 chr2R w2h ep 7611 7620 13 . . mult=13;src=W "1.11756;0.992;25:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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45 chr2R w2h ep 7621 7630 15.3 . . mult=15;src=W "1.13933;0.992;29:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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46 chr2R w2h ep 7631 7640 13.4 . . mult=13;src=W "1.11756;0.992;25:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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47 chr2R w2h ep 7641 7650 13.7 . . mult=13;src=W "1.11756;0.992;25:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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48 chr2R w2h ep 7651 7660 14.4 . . mult=14;src=W "1.12838;0.992;27:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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49 chr2R w2h ep 7661 7670 14.6 . . mult=14;src=W "1.12838;0.992;27:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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50 chr2R w2h ep 7671 7680 16.8 . . mult=16;src=W "1.15043;0.992;31:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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51 chr2R w2h ep 7681 7690 16.7 . . mult=16;src=W "1.15043;0.992;31:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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52 chr2R w2h ep 7691 7700 17.6 . . mult=17;src=W "1.16167;0.992;33:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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53 chr2R w2h ep 7701 7710 20.3 . . mult=20;src=W "1.19619;0.992;39:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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54 chr2R w2h ep 7711 7720 20.5 . . mult=20;src=W "1.19619;0.992;39:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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55 chr2R w2h ep 7721 7730 18.8 . . mult=18;src=W "1.17304;0.992;35:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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56 chr2R w2h ep 7731 7740 16.7 . . mult=16;src=W "1.15043;0.992;31:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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57 chr2R w2h ep 7741 7750 16.8 . . mult=16;src=W "1.15043;0.992;31:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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58 chr2R w2h ep 7751 7760 15.5 . . mult=15;src=W "1.13933;0.992;29:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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59 chr2R w2h ep 7761 7770 17.4 . . mult=17;src=W "1.16167;0.992;33:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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60 chr2R w2h ep 7771 7780 19.5 . . mult=19;src=W "1.18455;0.992;37:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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61 chr2R w2h ep 7781 7790 19.1 . . mult=19;src=W "1.18455;0.992;37:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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62 chr2R w2h ep 7791 7800 20.1 . . mult=20;src=W "1.19619;0.992;39:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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63 chr2R w2h ep 7801 7810 22.7 . . mult=22;src=W "1.21988;0.992;43:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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64 chr2R w2h ep 7811 7820 24.4 . . mult=24;src=W "1.24409;0.992;47:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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65 chr2R w2h ep 7821 7830 23.6 . . mult=23;src=W "1.23192;0.992;45:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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66 chr2R w2h ep 7831 7840 19.5 . . mult=19;src=W "1.18455;0.992;37:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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67 chr2R w2h ep 7841 7850 16.2 . . mult=16;src=W "1.15043;0.992;31:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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68 chr2R w2h ep 7851 7860 14.8 . . mult=14;src=W "1.12838;0.992;27:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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69 chr2R w2h ep 7861 7870 14 . . mult=14;src=W "1.12838;0.992;27:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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70 chr2R w2h ep 7871 7880 14.3 . . mult=14;src=W "1.12838;0.992;27:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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71 chr2R w2h ep 7881 7890 11.4 . . mult=11;src=W "1.0964;0.992;21:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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72 chr2R w2h ep 7891 7900 12.9 . . mult=12;src=W "1.1069;0.992;23:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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73 chr2R w2h ep 7901 7910 14 . . mult=14;src=W "1.12838;0.992;27:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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diff changeset
74 chr2R w2h ep 7911 7920 14.8 . . mult=14;src=W "1.12838;0.992;27:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
75 chr2R w2h ep 7921 7930 14.8 . . mult=14;src=W "1.12838;0.992;27:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
76 chr2R w2h ep 7931 7940 14.2 . . mult=14;src=W "1.12838;0.992;27:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
77 chr2R w2h ep 7941 7950 11.8 . . mult=11;src=W "1.0964;0.992;21:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
78 chr2R w2h ep 7951 7960 13.3 . . mult=13;src=W "1.11756;0.992;25:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
79 chr2R w2h ep 7961 7970 13.7 . . mult=13;src=W "1.11756;0.992;25:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
80 chr2R w2h ep 7971 7980 12.4 . . mult=12;src=W "1.1069;0.992;23:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
81 chr2R w2h ep 7981 7990 17.1 . . mult=17;src=W "1.16167;0.992;33:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
82 chr2R w2h ep 7991 8000 19.9 . . mult=19;src=W "1.18455;0.992;37:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
83 chr2R w2h ep 8001 8010 20 . . mult=20;src=W "1.19619;0.992;39:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
84 chr2R w2h ep 8011 8020 22.7 . . mult=22;src=W "1.21988;0.992;43:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
85 chr2R w2h ep 8021 8030 21.9 . . mult=21;src=W "1.20797;0.992;41:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
86 chr2R w2h ep 8031 8040 21 . . mult=21;src=W "1.20797;0.992;41:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
87 chr2R w2h ep 8041 8050 25.1 . . mult=25;src=W "1.25639;0.992;49:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
88 chr2R w2h ep 8051 8060 23.5 . . mult=23;src=W "1.23192;0.992;45:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
89 chr2R w2h ep 8061 8070 20.3 . . mult=20;src=W "1.19619;0.992;39:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
90 chr2R w2h ep 8071 8080 19.8 . . mult=19;src=W "1.18455;0.992;37:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
91 chr2R w2h ep 8081 8090 19.1 . . mult=19;src=W "1.18455;0.992;37:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
92 chr2R w2h ep 8091 8100 15.4 . . mult=15;src=W "1.13933;0.992;29:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
93 chr2R w2h ep 8101 8110 15.8 . . mult=15;src=W "1.13933;0.992;29:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
94 chr2R w2h ep 8111 8120 12.5 . . mult=12;src=W "1.1069;0.992;23:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
95 chr2R w2h ep 8121 8130 9.4 . . mult=9;src=W "1.07589;0.992;17:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
96 chr2R w2h ep 8131 8140 5.8 . . mult=5;src=W "1.03743;0.992;9:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
97 chr2R w2h ep 8210 8219 4.2 . . mult=4;src=W "1.02857;0.992;7:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
98 chr2R w2h ep 8220 8229 4.2 . . mult=4;src=W "1.02857;0.992;7:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
99 chr2R w2h ep 8230 8239 4.2 . . mult=4;src=W "1.02857;0.992;7:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
100 chr2R w2h ep 8240 8249 5 . . mult=5;src=W "1.03743;0.992;9:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
101 chr2R w2h ep 8260 8269 4.8 . . mult=4;src=W "1.02857;0.992;7:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
102 chr2R w2h ep 8270 8279 8 . . mult=8;src=W "1.06592;0.992;15:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
103 chr2R w2h ep 8280 8289 8 . . mult=8;src=W "1.06592;0.992;15:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
104 chr2R w2h ep 8290 8299 7.3 . . mult=7;src=W "1.05617;0.992;13:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
105 chr2R w2h ep 8300 8309 7 . . mult=7;src=W "1.05617;0.992;13:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
106 chr2R w2h ep 8310 8319 7.3 . . mult=7;src=W "1.05617;0.992;13:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
107 chr2R w2h ep 8320 8329 9.6 . . mult=9;src=W "1.07589;0.992;17:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
108 chr2R w2h ep 8330 8339 11.6 . . mult=11;src=W "1.0964;0.992;21:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
109 chr2R w2h ep 8340 8349 10.8 . . mult=10;src=W "1.08606;0.992;19:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
110 chr2R w2h ep 8350 8359 10.1 . . mult=10;src=W "1.08606;0.992;19:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
111 chr2R w2h ep 8360 8369 11 . . mult=11;src=W "1.0964;0.992;21:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
112 chr2R w2h ep 8370 8379 13.4 . . mult=13;src=W "1.11756;0.992;25:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
113 chr2R w2h ep 8380 8389 13 . . mult=13;src=W "1.11756;0.992;25:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
114 chr2R w2h ep 8390 8399 11.8 . . mult=11;src=W "1.0964;0.992;21:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
115 chr2R w2h ep 8400 8409 9 . . mult=9;src=W "1.07589;0.992;17:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
116 chr2R w2h ep 8410 8419 7.7 . . mult=7;src=W "1.05617;0.992;13:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
117 chr2R w2h ep 8420 8429 8.9 . . mult=8;src=W "1.06592;0.992;15:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
118 chr2R w2h ep 8430 8439 11.5 . . mult=11;src=W "1.0964;0.992;21:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
119 chr2R w2h ep 8440 8449 11.4 . . mult=11;src=W "1.0964;0.992;21:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
120 chr2R w2h ep 8450 8459 9.8 . . mult=9;src=W "1.07589;0.992;17:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
121 chr2R w2h ep 8460 8469 10.2 . . mult=10;src=W "1.08606;0.992;19:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
122 chr2R w2h ep 8470 8479 10.8 . . mult=10;src=W "1.08606;0.992;19:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
123 chr2R w2h ep 8480 8489 10 . . mult=10;src=W "1.08606;0.992;19:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
124 chr2R w2h ep 8490 8499 8.2 . . mult=8;src=W "1.06592;0.992;15:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
125 chr2R w2h ep 8500 8509 7.1 . . mult=7;src=W "1.05617;0.992;13:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
126 chr2R w2h ep 8510 8519 4.2 . . mult=4;src=W "1.02857;0.992;7:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
127 chr2R w2h ep 8520 8529 4.7 . . mult=4;src=W "1.02857;0.992;7:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
128 chr2R w2h ep 8739 8748 4.3 . . mult=4;src=W "1.02857;0.992;7:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
129 chr2R w2h ep 8749 8758 5.7 . . mult=5;src=W "1.03743;0.992;9:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
130 chr2R w2h ep 8759 8768 8 . . mult=8;src=W "1.06592;0.992;15:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
131 chr2R w2h ep 8769 8778 8 . . mult=8;src=W "1.06592;0.992;15:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
132 chr2R w2h ep 8779 8788 8.6 . . mult=8;src=W "1.06592;0.992;15:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
133 chr2R w2h ep 8789 8798 8.7 . . mult=8;src=W "1.06592;0.992;15:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
134 chr2R w2h ep 8880 8889 12.7 . . mult=12;src=W "1.1069;0.992;23:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
135 chr2R w2h ep 8890 8899 15.3 . . mult=15;src=W "1.13933;0.992;29:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
136 chr2R w2h ep 8900 8909 17.6 . . mult=17;src=W "1.16167;0.992;33:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
137 chr2R w2h ep 8910 8919 17.9 . . mult=17;src=W "1.16167;0.992;33:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
138 chr2R w2h ep 8920 8929 17.2 . . mult=17;src=W "1.16167;0.992;33:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
139 chr2R w2h ep 8930 8939 18.4 . . mult=18;src=W "1.17304;0.992;35:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
140 chr2R w2h ep 8940 8949 19.9 . . mult=19;src=W "1.18455;0.992;37:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
141 chr2R w2h ep 8950 8959 19.1 . . mult=19;src=W "1.18455;0.992;37:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
142 chr2R w2h ep 8960 8969 15.2 . . mult=15;src=W "1.13933;0.992;29:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
143 chr2R w2h ep 8970 8979 13 . . mult=13;src=W "1.11756;0.992;25:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
144 chr2R w2h ep 8980 8989 14.7 . . mult=14;src=W "1.12838;0.992;27:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
iuc
parents:
diff changeset
145 chr2R w2h ep 8990 8999 14.5 . . mult=14;src=W "1.12838;0.992;27:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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146 chr2R w2h ep 9000 9009 14.5 . . mult=14;src=W "1.12838;0.992;27:0"
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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147 # Predicted genes for sequence number 1 on both strands
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148 # start gene chr2R.g1
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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149 chr2R AUGUSTUS gene 7560 8931 0.83 - . chr2R.g1
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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150 chr2R AUGUSTUS transcript 7560 8931 0.83 - . chr2R.g1.t1
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151 chr2R AUGUSTUS start_codon 8929 8931 . - 0 transcript_id "chr2R.g1.t1"; gene_id "chr2R.g1";
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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152 # Evidence for and against this transcript:
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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153 # % of transcript supported by hints (any source): 60
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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154 # CDS exons: 3/3
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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155 # W: 3
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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156 # CDS introns: 0/2
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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157 # 5'UTR exons and introns: 0/0
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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158 # 3'UTR exons and introns: 0/0
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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159 # hint groups fully obeyed: 0
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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160 # incompatible hint groups: 102
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161 # W: 102
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162 # end gene chr2R.g1
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163 ###
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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164 # command line:
0d425a4b6896 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/augustus commit 0fed5bb024a096dcb5b2858520ba191da7798b6d
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165 # augustus --strand=both --noInFrameStop=false --gff3=off --uniqueGeneId=true --protein=off --codingseq=off --introns=off --stop=off --stop=off --cds=off --singlestrand=false /private/var/folders/2d/g1vdzd1n6fv1fgxtlx8vrb189nw7dq/T/tmpsUsEy3/files/000/dataset_17.dat --UTR=off --genemodel=complete --hintsfile=/private/var/folders/2d/g1vdzd1n6fv1fgxtlx8vrb189nw7dq/T/tmpsUsEy3/files/000/dataset_18.dat --extrinsicCfgFile=/private/var/folders/2d/g1vdzd1n6fv1fgxtlx8vrb189nw7dq/T/tmpsUsEy3/files/000/dataset_19.dat --predictionStart=7000 --predictionEnd=9000 --species=fly