Mercurial > repos > bgruening > bamhash

diff tool_dependencies.xml @ 0:63f6f42d112b draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/bamhash commit 7aa0b566d492b1830c0bd2e54ddf4a26be95f76d
author bgruening
date Thu, 17 Sep 2015 08:00:35 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu Sep 17 08:00:35 2015 -0400
@@ -0,0 +1,34 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="bamhash" version="1.1">
+        <install version="1.0">
+            <actions>
+                <action target_filename="BamHash-dd15dee202b4d873768017b8959e8000d62ccf67.tar.gz"
+                    type="download_by_url">https://github.com/DecodeGenetics/BamHash/archive/dd15dee202b4d873768017b8959e8000d62ccf67.tar.gz</action>
+                <action type="shell_command">make</action>
+                <action type="move_file">
+                    <source>bamhash_checksum_bam</source>
+                    <destination>$INSTALL_DIR/bin</destination>
+                </action>
+                <action type="move_file">
+                    <source>bamhash_checksum_fasta</source>
+                    <destination>$INSTALL_DIR/bin</destination>
+                </action>
+                <action type="move_file">
+                    <source>bamhash_checksum_fastq</source>
+                    <destination>$INSTALL_DIR/bin</destination>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                    <environment_variable name="PILEOMETH_ROOT_PATH" action="set_to">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions>
+        </install>
+            <readme>
+        <![CDATA[
+            BamHash: Hash BAM and FASTQ files to verify data integrity
+            See https://github.com/DecodeGenetics/BamHash
+        ]]>
+        </readme>
+    </package>
+</tool_dependency>