Mercurial > repos > bgruening > bigwig_to_bedgraph
comparison bigwig_to_bedgraph.xml @ 0:3799012ce2ff draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/bigwig_to_bedgraph commit b3c2bbc3342107c35a1dee05ccc1e4eddffd8a50-dirty
| author | bgruening |
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| date | Tue, 22 Sep 2015 04:12:40 -0400 |
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| -1:000000000000 | 0:3799012ce2ff |
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| 1 <tool id="bigwig_to_bedgraph" name="bigWigToBedGraph" version="0.1.0"> | |
| 2 <description> | |
| 3 Convert from bigWig to bedGraph format | |
| 4 </description> | |
| 5 <requirements> | |
| 6 <requirement type="package" version="312">ucsc_tools</requirement> | |
| 7 </requirements> | |
| 8 <stdio> | |
| 9 <exit_code range="1:" /> | |
| 10 </stdio> | |
| 11 <command><![CDATA[ | |
| 12 bigWigToBedGraph "${input}" "${output}" | |
| 13 ]]></command> | |
| 14 <inputs> | |
| 15 <param format="bigwig" name="input" type="data" label="bigwig file to convert" help=""/> | |
| 16 </inputs> | |
| 17 <outputs> | |
| 18 <data format="bedgraph" name="output" /> | |
| 19 </outputs> | |
| 20 <tests> | |
| 21 <test> | |
| 22 <param name="input" value="bigWigToBedGraph.bw" ftype="bigwig"/> | |
| 23 <output name="output" file="bigWigToBedGraph_result1.bedgraph" ftype="bedgraph" /> | |
| 24 </test> | |
| 25 <test><!-- The following crashes on old binaries of bigWigToBedGraph --> | |
| 26 <param name="input" value="bigWigToBedGraph_test2.bw" ftype="bigwig"/> | |
| 27 <output name="output" file="bigWigToBedGraph_result2.bedgraph" ftype="bedgraph" /> | |
| 28 </test> | |
| 29 </tests> | |
| 30 <help><![CDATA[ | |
| 31 | |
| 32 **What it does** | |
| 33 | |
| 34 Converts bigWig files to bedGraph format. | |
| 35 | |
| 36 ]]></help> | |
| 37 </tool> |