Mercurial > repos > bgruening > bionano_scaffold

comparison bionano_scaffold.xml @ 7:a7f16f24e9a1 draft

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/bionano commit bcbd45152c1809e656b2d09187847608a606d02c"
author bgruening
date Mon, 17 Jan 2022 08:15:31 +0000
parents 5d7c5ae1b69b
children 5258e18bbe23
comparison
equal deleted inserted replaced
6:5d7c5ae1b69b 7:a7f16f24e9a1
475 <!--<has_size value="4231746" delta="300" />--> 475 <!--<has_size value="4231746" delta="300" />-->
476 <has_archive_member path=".*/status.txt"/> 476 <has_archive_member path=".*/status.txt"/>
477 </assert_contents> 477 </assert_contents>
478 </output> 478 </output>
479 <assert_stdout> 479 <assert_stdout>
480 <has_text text='attr="maxmem" val0="8"'/> 480 <has_text_matching expression='attr="maxmem" val0="\d+"'/>
481 </assert_stdout> 481 </assert_stdout>
482 <assert_stdout> 482 <assert_stdout>
483 <has_text text='attr="maxthreads" val0="1"'/> 483 <has_text_matching expression='attr="maxthreads" val0="\d+"'/>
484 </assert_stdout> 484 </assert_stdout>
485 <assert_stdout> 485 <assert_stdout>
486 <has_text text='attr="insertThreads" val0="1"'/> 486 <has_text_matching expression='attr="insertThreads" val0="\d+"'/>
487 </assert_stdout> 487 </assert_stdout>
488 <assert_stdout> 488 <assert_stdout>
489 <has_text text='attr="maxvirtmem" val0="8"'/> 489 <has_text_matching expression='attr="maxvirtmem" val0="\d+"'/>
490 </assert_stdout> 490 </assert_stdout>
491 <assert_stdout> 491 <assert_stdout>
492 <has_text text="hybridScaffold"/> 492 <has_text text="hybridScaffold"/>
493 </assert_stdout> 493 </assert_stdout>
494 </test> 494 </test>
525 <output name="conflicts" ftype="txt"> 525 <output name="conflicts" ftype="txt">
526 <assert_contents> 526 <assert_contents>
527 <has_text text="alignmentOrientation" /> 527 <has_text text="alignmentOrientation" />
528 </assert_contents> 528 </assert_contents>
529 </output> <assert_stdout> 529 </output> <assert_stdout>
530 <has_text text='attr="maxmem" val0="8"'/> 530 <has_text_matching expression='attr="maxmem" val0="\d+"'/>
531 </assert_stdout> 531 </assert_stdout>
532 <assert_stdout> 532 <assert_stdout>
533 <has_text text='attr="maxthreads" val0="1"'/> 533 <has_text_matching expression='attr="maxthreads" val0="\d+"'/>
534 </assert_stdout> 534 </assert_stdout>
535 <assert_stdout> 535 <assert_stdout>
536 <has_text text='attr="insertThreads" val0="1"'/> 536 <has_text_matching expression='attr="insertThreads" val0="\d+"'/>
537 </assert_stdout> 537 </assert_stdout>
538 <assert_stdout> 538 <assert_stdout>
539 <has_text text='attr="maxvirtmem" val0="8"'/> 539 <has_text_matching expression='attr="maxvirtmem" val0="\d+"'/>
540 </assert_stdout> 540 </assert_stdout>
541 <assert_stdout> 541 <assert_stdout>
542 <has_text text="hybridScaffold"/> 542 <has_text text="hybridScaffold"/>
543 <!--attribute_is path="hybridScaffold/global/flag[@attr='maxthreads']" attribute="val0" text="2"/--> 543 <!--attribute_is path="hybridScaffold/global/flag[@attr='maxthreads']" attribute="val0" text="2"/-->
544 </assert_stdout> 544 </assert_stdout>
584 <!--<has_size value="4231908" delta="300" />--> 584 <!--<has_size value="4231908" delta="300" />-->
585 <has_archive_member path=".*/status.txt"/> 585 <has_archive_member path=".*/status.txt"/>
586 </assert_contents> 586 </assert_contents>
587 </output> 587 </output>
588 <assert_stdout> 588 <assert_stdout>
589 <has_text text='attr="maxmem" val0="8"'/> 589 <has_text_matching expression='attr="maxmem" val0="\d+"'/>
590 </assert_stdout> 590 </assert_stdout>
591 <assert_stdout> 591 <assert_stdout>
592 <has_text text='attr="maxthreads" val0="1"'/> 592 <has_text_matching expression='attr="maxthreads" val0="\d+"'/>
593 </assert_stdout> 593 </assert_stdout>
594 <assert_stdout> 594 <assert_stdout>
595 <has_text text='attr="insertThreads" val0="1"'/> 595 <has_text_matching expression='attr="insertThreads" val0="\d+"'/>
596 </assert_stdout> 596 </assert_stdout>
597 <assert_stdout> 597 <assert_stdout>
598 <has_text text='attr="maxvirtmem" val0="8"'/> 598 <has_text_matching expression='attr="maxvirtmem" val0="\d+"'/>
599 </assert_stdout> 599 </assert_stdout>
600 <assert_stdout> 600 <assert_stdout>
601 <has_text text="hybridScaffold"/> 601 <has_text text="hybridScaffold"/>
602 </assert_stdout> 602 </assert_stdout>
603 </test> 603 </test>
641 <assert_contents> 641 <assert_contents>
642 <has_archive_member path=".*/status.txt"/> 642 <has_archive_member path=".*/status.txt"/>
643 </assert_contents> 643 </assert_contents>
644 </output> 644 </output>
645 <assert_stdout> 645 <assert_stdout>
646 <has_text text='attr="maxmem" val0="8"'/> 646 <has_text_matching expression='attr="maxmem" val0="\d+"'/>
647 </assert_stdout> 647 </assert_stdout>
648 <assert_stdout> 648 <assert_stdout>
649 <has_text text='attr="maxthreads" val0="1"'/> 649 <has_text_matching expression='attr="maxthreads" val0="\d+"'/>
650 </assert_stdout> 650 </assert_stdout>
651 <assert_stdout> 651 <assert_stdout>
652 <has_text text='attr="insertThreads" val0="1"'/> 652 <has_text_matching expression='attr="insertThreads" val0="\d+"'/>
653 </assert_stdout> 653 </assert_stdout>
654 <assert_stdout> 654 <assert_stdout>
655 <has_text text='attr="maxvirtmem" val0="8"'/> 655 <has_text_matching expression='attr="maxvirtmem" val0="\d+"'/>
656 </assert_stdout> 656 </assert_stdout>
657 <assert_stdout> 657 <assert_stdout>
658 <has_text text="hybridScaffold"/> 658 <has_text text="hybridScaffold"/>
659 </assert_stdout> 659 </assert_stdout>
660 </test> 660 </test>
692 <has_text text="##agp-version"/> 692 <has_text text="##agp-version"/>
693 <has_n_lines n="9"/> 693 <has_n_lines n="9"/>
694 </assert_contents> 694 </assert_contents>
695 </output> 695 </output>
696 <assert_stdout> 696 <assert_stdout>
697 <has_text text='attr="maxmem" val0="8"'/> 697 <has_text_matching expression='attr="maxmem" val0="\d+"'/>
698 </assert_stdout> 698 </assert_stdout>
699 <assert_stdout> 699 <assert_stdout>
700 <has_text text='attr="maxthreads" val0="1"'/> 700 <has_text_matching expression='attr="maxthreads" val0="\d+"'/>
701 </assert_stdout> 701 </assert_stdout>
702 <assert_stdout> 702 <assert_stdout>
703 <has_text text='attr="insertThreads" val0="1"'/> 703 <has_text_matching expression='attr="insertThreads" val0="\d+"'/>
704 </assert_stdout> 704 </assert_stdout>
705 <assert_stdout> 705 <assert_stdout>
706 <has_text text='attr="maxvirtmem" val0="8"'/> 706 <has_text_matching expression='attr="maxvirtmem" val0="\d+"'/>
707 </assert_stdout> 707 </assert_stdout>
708 <assert_stdout> 708 <assert_stdout>
709 <has_text text="hybridScaffold"/> 709 <has_text text="hybridScaffold"/>
710 </assert_stdout> 710 </assert_stdout>
711 </test> 711 </test>