Alignment Stats
| Sequences analysed in total |
44115 |
| Single-end alignments with a unique best hit |
554 |
| Sequences without alignments under any condition |
43115 |
| Sequences that did not map uniquely |
446 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
8563 |
| Methylated C's in CpG context |
245 |
| Methylated C's in CHG context |
51 |
| Methylated C's in CHH context |
114 |
| Methylated C's in Unknown context |
1 |
| Unmethylated C's in CpG context |
133 |
| Unmethylated C's in CHG context |
1762 |
| Unmethylated C's in CHH context |
6258 |
| Unmethylated C's in Unknown context |
5 |
| Percentage methylation (CpG context) |
64.8% |
| Percentage methylation (CHG context) |
2.8% |
| Percentage methylation (CHH context) |
1.8% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
230 |
original top strand |
| CTOT |
0 |
complementary to original top strand |
| CTOB |
0 |
complementary to original bottom strand |
| OB |
324 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
554 |
| Unique alignments |
504 |
| Duplicates removed |
50 |
| Duplicated alignments were found at 44 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
8563 |
| Methylated C's in CpG context |
245 |
| Methylated C's in CHG context |
51 |
| Methylated C's in CHH context |
114 |
| Unmethylated C's in CpG context |
133 |
| Unmethylated C's in CHG context |
1762 |
| Unmethylated C's in CHH context |
6258 |
| Percentage methylation (CpG context) |
64.8% |
| Percentage methylation (CHG context) |
2.8% |
| Percentage methylation (CHH context) |
1.8% |
|
|
M-Bias Plot
