Mercurial > repos > bgruening > bismark

comparison bismark_bowtie2_wrapper.xml @ 6:0f8646f22b8d draft

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author bgruening
date Wed, 11 Feb 2015 16:21:51 -0500
parents b100248c35b8
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5:b100248c35b8 6:0f8646f22b8d
18 bismark_wrapper.py 18 bismark_wrapper.py
19 19
20 ## Change this to accommodate the number of threads you have available. 20 ## Change this to accommodate the number of threads you have available.
21 --num-threads "\${GALAXY_SLOTS:-24}" 21 --num-threads "\${GALAXY_SLOTS:-24}"
22 22
23 ##--bismark_path \$SCRIPT_PATH 23 --bismark_path \$SCRIPT_PATH
24 24
25 --bowtie2 25 --bowtie2
26 26
27 ## 27 ##
28 ## Bismark Genome Preparation, if desired. 28 ## Bismark Genome Preparation, if desired.