Mercurial > repos > bgruening > bismark

comparison bismark_methylation_extractor.xml @ 12:78c791a11b4c draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/bismark commit 8a26d7022e3535d995aec277e15d7d04800965e4
author bgruening
date Wed, 05 Jun 2019 07:44:26 -0400
parents 9bfe38410155
children f211753166bd
comparison
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11:1f15ad5ca867 12:78c791a11b4c
44 #end if 44 #end if
45 45
46 #if $cytosine_report['cytosine_report_selector']: 46 #if $cytosine_report['cytosine_report_selector']:
47 --cytosine_report '$output_cytosine_report' 47 --cytosine_report '$output_cytosine_report'
48 #if $cytosine_report.refGenomeSource.genomeSource == "built_in_fasta": 48 #if $cytosine_report.refGenomeSource.genomeSource == "built_in_fasta":
49 --genome_file '{cytosine_report.refGenomeSource.built_in_fasta.fields.path}' 49 --genome_file '${cytosine_report.refGenomeSource.built_in_fasta.fields.path}'
50 #else: 50 #else:
51 --genome_file '$cytosine_report.refGenomeSource["own_file"]' 51 --genome_file '$cytosine_report.refGenomeSource["own_file"]'
52 #end if 52 #end if
53 #if not $cytosine_report['cpg_context']: 53 #if not $cytosine_report['cpg_context']:
54 --cx_context 54 --cx_context