Mercurial > repos > bgruening > bismark

comparison bismark_bowtie2_wrapper.xml @ 2:82814a8a2395 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
added samtools 0.1.19 as dependency
author bgruening
date Wed, 21 Aug 2013 05:19:54 -0400
parents 62c6da72dd4a
children 91f07ff056ca
comparison
equal deleted inserted replaced
1:9d02cd7883ad 2:82814a8a2395
1 <tool id="bismark_bowtie2" name="Bismark" version="0.7.12"> 1 <tool id="bismark_bowtie2" name="Bismark" version="0.7.12.1">
2 <!-- Wrapper compatible with Bismark version 0.7.11 --> 2 <!-- Wrapper compatible with Bismark version 0.7.11 -->
3 <description>bisulfite mapper (bowtie2)</description> 3 <description>bisulfite mapper (bowtie2)</description>
4 <!--<version_command>bismark version</version_command>--> 4 <!--<version_command>bismark version</version_command>-->
5 <requirements> 5 <requirements>
6 <requirement type="set_environment">SCRIPT_PATH</requirement> 6 <requirement type="set_environment">SCRIPT_PATH</requirement>
7 <requirement type="package" version="0.1.18">samtools</requirement> 7 <requirement type="package" version="0.1.19">samtools</requirement>
8 <requirement type="package" version="2.1.0">bowtie2</requirement> 8 <requirement type="package" version="2.1.0">bowtie2</requirement>
9 </requirements> 9 </requirements>
10 <parallelism method="basic"></parallelism> 10 <parallelism method="basic"></parallelism>
11 <command interpreter="python"> 11 <command interpreter="python">
12 bismark_wrapper.py 12 bismark_wrapper.py