Mercurial > repos > bgruening > bismark

comparison bismark_bowtie_wrapper.xml @ 2:82814a8a2395 draft

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added samtools 0.1.19 as dependency
author bgruening
date Wed, 21 Aug 2013 05:19:54 -0400
parents 62c6da72dd4a
children 91f07ff056ca
comparison
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1:9d02cd7883ad 2:82814a8a2395
1 <tool id="bismark_bowtie" name="Bismark" version="0.7.12"> 1 <tool id="bismark_bowtie" name="Bismark" version="0.7.12.1">
2 <!-- Wrapper compatible with Bismark version 0.7.11 --> 2 <!-- Wrapper compatible with Bismark version 0.7.11 -->
3 <description>bisulfite mapper (bowtie)</description> 3 <description>bisulfite mapper (bowtie)</description>
4 <!--<version_command>bismark version</version_command>--> 4 <!--<version_command>bismark version</version_command>-->
5 <requirements> 5 <requirements>
6 <requirement type="set_environment">SCRIPT_PATH</requirement> 6 <requirement type="set_environment">SCRIPT_PATH</requirement>
7 <requirement type="package" version="0.1.18">samtools</requirement> 7 <requirement type="package" version="0.1.19">samtools</requirement>
8 <requirement type="package" version="0.12.8">bowtie</requirement> 8 <requirement type="package" version="0.12.8">bowtie</requirement>
9 </requirements> 9 </requirements>
10 <parallelism method="basic"></parallelism> 10 <parallelism method="basic"></parallelism>
11 <command interpreter="python"> 11 <command interpreter="python">
12 bismark_wrapper.py 12 bismark_wrapper.py