Mercurial > repos > bgruening > bismark

comparison bismark_deduplicate_wrapper.xml @ 13:f211753166bd draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/bismark commit b9780e368b2e46dc541a846519ccc9593226ee0d
author bgruening
date Tue, 30 Jul 2019 06:30:36 -0400
parents 9bfe38410155
children
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12:78c791a11b4c 13:f211753166bd
1 <tool id="bismark_deduplicate" name="Bismark Deduplicate" version="0.20.0" profile="18.01"> 1 <tool id="bismark_deduplicate" name="Bismark Deduplicate" version="0.22.1" profile="18.01">
2 <description>Deduplicates reads mapped by Bismark</description> 2 <description>Deduplicates reads mapped by Bismark</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.20.0">bismark</requirement> 4 <requirement type="package" version="0.22.1">bismark</requirement>
5 <requirement type="package" version="1.8">samtools</requirement> 5 <requirement type="package" version="1.8">samtools</requirement>
6 <requirement type="package" version="2.3.4.2">bowtie2</requirement> 6 <requirement type="package" version="2.3.5">bowtie2</requirement>
7 </requirements> 7 </requirements>
8 <command><![CDATA[ 8 <command><![CDATA[
9 python '$__tool_directory__/bismark_deduplicate_wrapper.py' 9 python '$__tool_directory__/bismark_deduplicate_wrapper.py'
10 10
11 --single_or_paired $sPaired 11 --single_or_paired $sPaired