Mercurial > repos > bgruening > bismark

diff test-data/output_splitting_report.txt @ 8:9bfe38410155 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/bismark commit 51299fa62f0566a4a897b1c149db564631282fff
author bgruening
date Wed, 22 Aug 2018 08:09:42 -0400
parents
children f211753166bd
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/output_splitting_report.txt	Wed Aug 22 08:09:42 2018 -0400
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+dataset_11.dat
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+Parameters used to extract methylation information:
+Bismark Extractor Version: v0.20.0
+Bismark result file: single-end (SAM format)
+Output specified: comprehensive
+
+
+Processed 554 lines in total
+Total number of methylation call strings processed: 554
+
+Final Cytosine Methylation Report
+=================================
+Total number of C's analysed:	8563
+
+Total methylated C's in CpG context:	245
+Total methylated C's in CHG context:	51
+Total methylated C's in CHH context:	114
+
+Total C to T conversions in CpG context:	133
+Total C to T conversions in CHG context:	1762
+Total C to T conversions in CHH context:	6258
+
+C methylated in CpG context:	64.8%
+C methylated in CHG context:	2.8%
+C methylated in CHH context:	1.8%
+
+