Mercurial > repos > bgruening > bismark
diff test-data/output_splitting_report.txt @ 8:9bfe38410155 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/bismark commit 51299fa62f0566a4a897b1c149db564631282fff
author | bgruening |
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date | Wed, 22 Aug 2018 08:09:42 -0400 |
parents | |
children | f211753166bd |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/output_splitting_report.txt Wed Aug 22 08:09:42 2018 -0400 @@ -0,0 +1,28 @@ +dataset_11.dat + +Parameters used to extract methylation information: +Bismark Extractor Version: v0.20.0 +Bismark result file: single-end (SAM format) +Output specified: comprehensive + + +Processed 554 lines in total +Total number of methylation call strings processed: 554 + +Final Cytosine Methylation Report +================================= +Total number of C's analysed: 8563 + +Total methylated C's in CpG context: 245 +Total methylated C's in CHG context: 51 +Total methylated C's in CHH context: 114 + +Total C to T conversions in CpG context: 133 +Total C to T conversions in CHG context: 1762 +Total C to T conversions in CHH context: 6258 + +C methylated in CpG context: 64.8% +C methylated in CHG context: 2.8% +C methylated in CHH context: 1.8% + +