--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/mapping_report_custom.txt	Wed Aug 21 12:59:48 2019 -0400
@@ -0,0 +1,42 @@
+Bismark report for: input_1.fq.gz (version: v0.22.1)
+Option '--directional' specified (default mode): alignments to complementary strands (CTOT, CTOB) were ignored (i.e. not performed)
+Bismark was run with Bowtie 2 against the bisulfite genome of /tmp/tmp53fiEn/ with the specified options: -q -L 20 -D 15 -R 2 --score-min L,0,-0.8 --ignore-quals --quiet
+
+Final Alignment report
+======================
+Sequences analysed in total:	44115
+Number of alignments with a unique best hit from the different alignments:	1992
+Mapping efficiency:	4.5%
+Sequences with no alignments under any condition:	40786
+Sequences did not map uniquely:	1337
+Sequences which were discarded because genomic sequence could not be extracted:	0
+
+Number of sequences with unique best (first) alignment came from the bowtie output:
+CT/CT:	832	((converted) top strand)
+CT/GA:	1160	((converted) bottom strand)
+GA/CT:	0	(complementary to (converted) top strand)
+GA/GA:	0	(complementary to (converted) bottom strand)
+
+Number of alignments to (merely theoretical) complementary strands being rejected in total:	0
+
+Final Cytosine Methylation Report
+=================================
+Total number of C's analysed:	31956
+
+Total methylated C's in CpG context:	564
+Total methylated C's in CHG context:	249
+Total methylated C's in CHH context:	882
+Total methylated C's in Unknown context:	36
+
+Total unmethylated C's in CpG context:	608
+Total unmethylated C's in CHG context:	6183
+Total unmethylated C's in CHH context:	23470
+Total unmethylated C's in Unknown context:	232
+
+C methylated in CpG context:	48.1%
+C methylated in CHG context:	3.9%
+C methylated in CHH context:	3.6%
+C methylated in Unknown context (CN or CHN):	13.4%
+
+
+Bismark completed in 0d 0h 0m 8s