--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/mapping_report_pbat.txt	Wed Aug 28 07:08:45 2019 -0400
@@ -0,0 +1,40 @@
+Bismark report for: input_1.fq (version: v0.22.1)
+Option '--pbat' specified: alignments to original strands (OT and OB) strands were ignored (i.e. not performed)
+Bismark was run with Bowtie 2 against the bisulfite genome of /tmp/tmpuqE7r1/ with the specified options: -q -L 20 -D 15 -R 2 --score-min L,0,-0.2 --ignore-quals --quiet
+
+Final Alignment report
+======================
+Sequences analysed in total:	44115
+Number of alignments with a unique best hit from the different alignments:	13
+Mapping efficiency:	0.0%
+Sequences with no alignments under any condition:	44059
+Sequences did not map uniquely:	43
+Sequences which were discarded because genomic sequence could not be extracted:	0
+
+Number of sequences with unique best (first) alignment came from the bowtie output:
+CT/CT:	0	((converted) top strand)
+CT/GA:	0	((converted) bottom strand)
+GA/CT:	11	(complementary to (converted) top strand)
+GA/GA:	2	(complementary to (converted) bottom strand)
+
+Final Cytosine Methylation Report
+=================================
+Total number of C's analysed:	307
+
+Total methylated C's in CpG context:	1
+Total methylated C's in CHG context:	3
+Total methylated C's in CHH context:	227
+Total methylated C's in Unknown context:	0
+
+Total unmethylated C's in CpG context:	1
+Total unmethylated C's in CHG context:	4
+Total unmethylated C's in CHH context:	71
+Total unmethylated C's in Unknown context:	0
+
+C methylated in CpG context:	50.0%
+C methylated in CHG context:	42.9%
+C methylated in CHH context:	76.2%
+Can't determine percentage of methylated Cs in Unknown context (CN or CHN) if value was 0
+
+
+Bismark completed in 0d 0h 0m 7s