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view test-data/output_splitting_report.txt @ 19:359f8b60d316 draft

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/bismark commit 36810f2b29fdaffc73c3f85c6ed2f91887b49e93"
author bgruening
date Fri, 04 Oct 2019 07:54:51 -0400
parents f211753166bd
children 8c191acde702
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dataset_76c1988f-01b0-427e-9dbe-bfb5eee1c664.dat

Parameters used to extract methylation information:
Bismark Extractor Version: v0.22.1
Bismark result file: single-end (SAM format)
Output specified: comprehensive


Processed 554 lines in total
Total number of methylation call strings processed: 554

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	8563

Total methylated C's in CpG context:	245
Total methylated C's in CHG context:	51
Total methylated C's in CHH context:	114

Total C to T conversions in CpG context:	133
Total C to T conversions in CHG context:	1762
Total C to T conversions in CHH context:	6258

C methylated in CpG context:	64.8%
C methylated in CHG context:	2.8%
C methylated in CHH context:	1.8%