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comparison get_pubchem/get_pubchem_as_smiles.xml @ 4:7c1f9962ac07 draft

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Add temporary hack until my galaxy stdout/stderr UTF-8 bug is fixed.
author bgruening
date Fri, 27 Sep 2013 15:51:46 -0400
parents 021f0ef9474f
children c2055dd1927b
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3:021f0ef9474f 4:7c1f9962ac07
5 </requirements> 5 </requirements>
6 <command interpreter="python"> 6 <command interpreter="python">
7 get_pubchem_as_smiles.py 7 get_pubchem_as_smiles.py
8 -o $pubchem_smi 8 -o $pubchem_smi
9 -p 4 9 -p 4
10 ## temporary hack until my Galaxy patch is committed
11 > /dev/null 2>&#38;1
10 </command> 12 </command>
11 <stdio> 13 <stdio>
12 <regex match="obError" 14 <regex match="obError"
13 source="both" 15 source="both"
14 level="fatal" 16 level="fatal"