Mercurial > repos > bgruening > chemical_data_sources

comparison get_online_data/get_online_data.py @ 5:c2055dd1927b draft default tip

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author bgruening
date Thu, 24 Apr 2014 13:19:33 -0400
parents f653fd06f055
children
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4:7c1f9962ac07 5:c2055dd1927b
35 out = open(sys.argv[2], 'wb') 35 out = open(sys.argv[2], 'wb')
36 36
37 if len(sys.argv) > 3: 37 if len(sys.argv) > 3:
38 allowed_extensions = [ ext.strip() for ext in unescape(sys.argv[3]).split('\n') ] 38 allowed_extensions = [ ext.strip() for ext in unescape(sys.argv[3]).split('\n') ]
39 else: 39 else:
40 allowed_extensions = ['.sdf', '.smi', '.inchi'] 40 allowed_extensions = ['.sdf', '.smi', '.inchi', '.mol']
41 41
42 for url in urls.split('\n'): 42 for url in urls.split('\n'):
43 url = url.strip() 43 url = url.strip()
44 request = urllib2.Request( url ) 44 request = urllib2.Request( url )
45 request.add_header('Accept-encoding', 'gzip') 45 request.add_header('Accept-encoding', 'gzip')