Mercurial > repos > bgruening > cp_cellprofiler

comparison cp_common_functions.py @ 5:e917a2424690 draft

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 35da2dcd86747c9bff138e100dbe08c6106f3780"
author bgruening
date Sat, 06 Feb 2021 09:58:14 +0000
parents 78a16d8c8d5e
children eb6c08714244
comparison
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4:fca368c99299 5:e917a2424690
1 INDENTATION = " " 1 INDENTATION = " "
2 LINE_NUM_MODULES = 4 2 LINE_NUM_MODULES = 4
3
3 4
4 def get_json_value(json_input, keys_path): 5 def get_json_value(json_input, keys_path):
5 """Returns the value specified in keys_path (using dot notation) or an empty string if the key doesn't exist""" 6 """Returns the value specified in keys_path (using dot notation) or an empty string if the key doesn't exist"""
6 if not isinstance(json_input, dict): 7 if not isinstance(json_input, dict):
7 return "" 8 return ""
19 if a == "" or b == "": 20 if a == "" or b == "":
20 return "" 21 return ""
21 else: 22 else:
22 return f"{a}_{b}" 23 return f"{a}_{b}"
23 24
24 25
25 def get_total_number_of_modules(pipeline_lines): 26 def get_total_number_of_modules(pipeline_lines):
26 """Gets the number of modules from the header of the previous pipeline""" 27 """Gets the number of modules from the header of the previous pipeline"""
27 number_of_modules = pipeline_lines[LINE_NUM_MODULES].strip().split(':')[1] 28 number_of_modules = pipeline_lines[LINE_NUM_MODULES].strip().split(':')[1]
28 return int(number_of_modules) 29 return int(number_of_modules)
29 30