Mercurial > repos > bgruening > cp_cellprofiler

comparison cellprofiler.xml @ 7:eb6c08714244 draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 57a0433defa3cbc37ab34fbb0ebcfaeb680db8d5
author bgruening
date Sun, 05 Nov 2023 09:28:09 +0000
parents 0e4dccaafef5
children
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6:0e4dccaafef5 7:eb6c08714244
1 <tool id="cp_cellprofiler" name="CellProfiler" version="@CP_VERSION@+galaxy@VERSION_SUFFIX@"> 1 <tool id="cp_cellprofiler" name="Run CellProfiler pipeline" version="@CP_VERSION@+galaxy@VERSION_SUFFIX@">
2 <description>run a CellProfiler pipeline</description> 2 <description>with CellProfiler 3</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 <token name="@VERSION_SUFFIX@">0</token> 5 <token name="@VERSION_SUFFIX@">1</token>
6 <xml name="test_assert_content" token_n="291"> 6 <xml name="test_assert_content" token_n="291">
7 <assert_contents> 7 <assert_contents>
8 <has_n_lines n="@N@" /> 8 <has_n_lines n="@N@" />
9 </assert_contents> 9 </assert_contents>
10 </xml> 10 </xml>
11 </macros> 11 </macros>
12 <edam_operations>
13 <edam_operation>operation_3443</edam_operation>
14 </edam_operations>
15 <xrefs>
16 <xref type="bio.tools">CellProfiler</xref>
17 <xref type="biii">cellprofiler</xref>
18 </xrefs>
12 <expand macro="cp_requirements" /> 19 <expand macro="cp_requirements" />
13 <command detect_errors="aggressive"><![CDATA[ 20 <command detect_errors="aggressive"><![CDATA[
14 bash '$script_file' && 21 bash '$script_file' &&
15 cellprofiler -c -r --file-list list.txt -o ./output -p '$pipeline' 22 cellprofiler -c -r --file-list list.txt -o ./output -p '$pipeline'
16 #if '$detailed_output' 23 #if '$detailed_output'