Mercurial > repos > bgruening > cp_cellprofiler
comparison cellprofiler.xml @ 7:eb6c08714244 draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit 57a0433defa3cbc37ab34fbb0ebcfaeb680db8d5
author | bgruening |
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date | Sun, 05 Nov 2023 09:28:09 +0000 |
parents | 0e4dccaafef5 |
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6:0e4dccaafef5 | 7:eb6c08714244 |
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1 <tool id="cp_cellprofiler" name="CellProfiler" version="@CP_VERSION@+galaxy@VERSION_SUFFIX@"> | 1 <tool id="cp_cellprofiler" name="Run CellProfiler pipeline" version="@CP_VERSION@+galaxy@VERSION_SUFFIX@"> |
2 <description>run a CellProfiler pipeline</description> | 2 <description>with CellProfiler 3</description> |
3 <macros> | 3 <macros> |
4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
5 <token name="@VERSION_SUFFIX@">0</token> | 5 <token name="@VERSION_SUFFIX@">1</token> |
6 <xml name="test_assert_content" token_n="291"> | 6 <xml name="test_assert_content" token_n="291"> |
7 <assert_contents> | 7 <assert_contents> |
8 <has_n_lines n="@N@" /> | 8 <has_n_lines n="@N@" /> |
9 </assert_contents> | 9 </assert_contents> |
10 </xml> | 10 </xml> |
11 </macros> | 11 </macros> |
12 <edam_operations> | |
13 <edam_operation>operation_3443</edam_operation> | |
14 </edam_operations> | |
15 <xrefs> | |
16 <xref type="bio.tools">CellProfiler</xref> | |
17 <xref type="biii">cellprofiler</xref> | |
18 </xrefs> | |
12 <expand macro="cp_requirements" /> | 19 <expand macro="cp_requirements" /> |
13 <command detect_errors="aggressive"><![CDATA[ | 20 <command detect_errors="aggressive"><![CDATA[ |
14 bash '$script_file' && | 21 bash '$script_file' && |
15 cellprofiler -c -r --file-list list.txt -o ./output -p '$pipeline' | 22 cellprofiler -c -r --file-list list.txt -o ./output -p '$pipeline' |
16 #if '$detailed_output' | 23 #if '$detailed_output' |